Clone GH04113 Report

Search the DGRC for GH04113

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:13
Vector:pOT2
Associated Gene/TranscriptCG1809-RA
Protein status:GH04113.pep: gold
Preliminary Size:1708
Sequenced Size:1679

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1809 2001-01-01 Release 2 assignment
CG1809 2001-09-19 Blastp of sequenced clone
CG1809 2003-01-01 Sim4 clustering to Release 3
CG1809 2008-04-29 Release 5.5 accounting
CG1809 2008-08-15 Release 5.9 accounting
CG1809 2008-12-18 5.12 accounting

Clone Sequence Records

GH04113.complete Sequence

1679 bp (1679 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058289

> GH04113.complete
CTGACCTCCACACCACGCCTGGGATTAGCTGAAAATGGCCAGGAGATTCA
TTCTGTTGCTCGTCTTAGCTGTCTGCCTGAGCGGAAGTGCCAGCGGACAA
AGAGACCACCCTCGTGGGCGTTCCTTTGATGCCGAATCGCATCCGATCAA
GTATGCAGAGGAGCAGCAGACCCAGTACTGGGTGGATAAGGCCCAGGCGA
AGCTGTTATCGAAGCTGGCCGAGCAGGAGTCCGCGACCACAAACAAGGCG
AAGAACGTGATTCTGTTCCTGGGCGATGGAATGTCCGTTCACACGGTCAC
GGCCACCAGGAATCTGCTAGGCGACAGTGCGGAGCAGGTGTACTTTGAGG
GATTTCCCTACACTGGCTTGTCCAAGACCTACTGCGTAAACCGCCAGGTG
GCCGATTCTGCTTGCACGGCCACCGCCTATTTGGGCGGTGTGAAGGCGAA
CTATGGAACGATTGGCGTTAACGCCAATGTGTCCAGGTACAGCTGTGATG
GCGCCGCCAACGAGGAGGATCGGGTGCTCAGCATCGCGCATTGGGCACAG
GCGGCTGGCAAGGATGCAGGTCTGGTGACTACAGCCCGGGTAACTCATGC
ATCCCCAGCTGGTGTTTATGCCCACATCGCGGATCGCAATTGGGAGAACG
ACTGGGAGGTGGCCAACAGGGAGTGCGATCCCGAGCAGACCATCGATATT
GCCCGTCAGCTCGTGGAGCAGCCTGTGGGTCAGCAGCTGAAGGTAATCCT
TGGAGGCGGTCGCAAGAACTTCATCGACGCAACGGTAAATGATGAGGAGG
GTTATCCCGGCAAGCGTACCGACGGTCGTCACTTAATCCGCAGTTGGTTG
GATCAGAAGAAGGAGGCCAATGTCTCAGCCAAATACGTGTGGAGTCGCAA
GGGACTCAGTCTGGTGGATCTCGAGAATACGGACTACCTATTGGGTCTCT
TTGCCAATGATCATCTGCCGTACAACGGTGATCGGGACAGGAAACGTAGT
CAGTTGGCGGATCCTTCGCTGAGTGAGCTCACGGAGGCTGCCATCACGGT
GTTGAGCCGCAATGACAAGGGATTCTTTCTCTTCGTCGAGGGTGCTCGTA
TCGACATGGCCCACCACGATACCTTCGCCAAGAGATCCCTCGAGGATACC
GCCGAGTTTGCGAGGGCTGTCCAGAAGGCTCGCGAACTTACCTCCGAGGA
TGACACACTGATCGTGGTGACCGCTGATCATGCTCATGTTATGTCCATCA
ATGGTTATCCTTATCGTGACCAGGAGATCACCGGATTGGCTCAACTGGCG
GATGATAATCTGCCCTATACGATTTTGTCCTATGCCAATGGACCTGGCTA
CTACTCCGGCTACAATCGCGCTGAGGGACGTGCCCTTCTAAAGGAGAAGT
TGGTTGCGGACTCAGACTATCAGTATCCCACGCTGGCGCCCTTGGACGCA
GAAACCCACGGAGGAGATGATGTGGCGGTGTATGCCTCGGGACCCTATGC
CCAGTACTTCAGTGGCAACTACGAGCAAAGCAATATTCCGGCGCTGATGG
CCAGAGCAGCGGGTATCGGGCCCTATGCCTAGGATTTGGCTGATTTTCTT
GGCGCATGTAAAACTCCTCTCGCTGAGATGGAATAATTAAAATGCATCAT
TGCTAAACGAAAAAAAAAAAAAAAAAAAA

GH04113.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809.b 2225 CG1809.b 215..1875 1..1661 8305 100 Plus
CG1809.a 2284 CG1809.a 527..2187 1..1661 8305 100 Plus
CG1809-RA 2051 CG1809-RA 215..1875 1..1661 8305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5449742..5450900 103..1261 5795 100 Plus
chr2R 21145070 chr2R 5450969..5451366 1262..1659 1990 100 Plus
chr2R 21145070 chr2R 5449160..5449263 1..104 520 100 Plus
chr3R 27901430 chr3R 5321195..5321278 373..456 210 83.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9562247..9563405 103..1261 5795 100 Plus
2R 25286936 2R 9563474..9563873 1262..1661 2000 100 Plus
2R 25286936 2R 9561665..9561768 1..104 520 100 Plus
3R 32079331 3R 9495347..9495436 373..462 225 83.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9563446..9564604 103..1261 5795 100 Plus
2R 25260384 2R 9564673..9565072 1262..1661 2000 100 Plus
2R 25260384 2R 9562864..9562967 1..104 520 100 Plus
3R 31820162 3R 9236200..9236267 395..462 220 88.2 Plus
3L 28103327 3L 5587316..5587371 306..251 175 87.5 Minus
3L 28103327 3L 5586977..5587086 651..542 175 77.2 Minus
Blast to na_te.dros performed on 2019-03-15 15:40:02 has no hits.

GH04113.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:41:13 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5449160..5449263 1..104 100 -> Plus
chr2R 5449744..5450900 105..1261 100 -> Plus
chr2R 5450969..5451366 1262..1659 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:13:03 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 1..1548 35..1582 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:00 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 1..1548 35..1582 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:35:49 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 1..1548 35..1582 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:53 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 1..1548 35..1582 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:12:20 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 1..1548 35..1582 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:00 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 17..1675 1..1659 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:00 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 17..1675 1..1659 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:35:49 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 28..1686 1..1659 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:53 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 17..1675 1..1659 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:12:20 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 28..1686 1..1659 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:13 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9561665..9561768 1..104 100 -> Plus
2R 9563474..9563871 1262..1659 100   Plus
2R 9562249..9563405 105..1261 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:13 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9561665..9561768 1..104 100 -> Plus
2R 9563474..9563871 1262..1659 100   Plus
2R 9562249..9563405 105..1261 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:13 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9561665..9561768 1..104 100 -> Plus
2R 9563474..9563871 1262..1659 100   Plus
2R 9562249..9563405 105..1261 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:35:49 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5450979..5451376 1262..1659 100   Plus
arm_2R 5449170..5449273 1..104 100 -> Plus
arm_2R 5449754..5450910 105..1261 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:26 Download gff for GH04113.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9562864..9562967 1..104 100 -> Plus
2R 9563448..9564604 105..1261 100 -> Plus
2R 9564673..9565070 1262..1659 100   Plus

GH04113.pep Sequence

Translation from 34 to 1581

> GH04113.pep
MARRFILLLVLAVCLSGSASGQRDHPRGRSFDAESHPIKYAEEQQTQYWV
DKAQAKLLSKLAEQESATTNKAKNVILFLGDGMSVHTVTATRNLLGDSAE
QVYFEGFPYTGLSKTYCVNRQVADSACTATAYLGGVKANYGTIGVNANVS
RYSCDGAANEEDRVLSIAHWAQAAGKDAGLVTTARVTHASPAGVYAHIAD
RNWENDWEVANRECDPEQTIDIARQLVEQPVGQQLKVILGGGRKNFIDAT
VNDEEGYPGKRTDGRHLIRSWLDQKKEANVSAKYVWSRKGLSLVDLENTD
YLLGLFANDHLPYNGDRDRKRSQLADPSLSELTEAAITVLSRNDKGFFLF
VEGARIDMAHHDTFAKRSLEDTAEFARAVQKARELTSEDDTLIVVTADHA
HVMSINGYPYRDQEITGLAQLADDNLPYTILSYANGPGYYSGYNRAEGRA
LLKEKLVADSDYQYPTLAPLDAETHGGDDVAVYASGPYAQYFSGNYEQSN
IPALMARAAGIGPYA*

GH04113.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12475-PA 516 GF12475-PA 1..516 1..515 2349 84.9 Plus
Dana\GF10455-PA 525 GF10455-PA 11..519 8..515 1558 58.8 Plus
Dana\GF17216-PA 543 GF17216-PA 6..528 4..512 1238 50.3 Plus
Dana\GF23560-PA 523 GF23560-PA 5..508 4..513 1129 48.4 Plus
Dana\GF23984-PA 517 GF23984-PA 5..510 3..512 1081 45.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24085-PA 515 GG24085-PA 1..515 1..515 2671 96.3 Plus
Dere\GG14123-PA 524 GG14123-PA 1..517 1..515 1515 56.6 Plus
Dere\GG16809-PA 546 GG16809-PA 62..530 42..511 1215 52.8 Plus
Dere\GG13235-PA 529 GG13235-PA 3..508 2..513 1136 48 Plus
Dere\GG15026-PA 522 GG15026-PA 57..515 43..512 1108 49.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19931-PA 524 GH19931-PA 10..520 6..515 1827 68.8 Plus
Dgri\GH16243-PA 525 GH16243-PA 36..518 25..515 1479 58.2 Plus
Dgri\GH18436-PA 542 GH18436-PA 58..525 43..511 1226 53.1 Plus
Dgri\GH15376-PA 523 GH15376-PA 34..505 42..513 1154 51.7 Plus
Dgri\GH15197-PA 525 GH15197-PA 20..518 10..512 1102 46.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Alp6-PA 515 CG1809-PA 1..515 1..515 2679 100 Plus
Alp10-PA 524 CG10592-PA 11..517 5..515 1488 57.9 Plus
phu-PA 546 CG8147-PA 1..528 1..509 1187 49.4 Plus
Alp1-PA 523 CG5656-PA 3..508 2..513 1101 47.8 Plus
Alp5-PA 522 CG10827-PA 57..515 43..512 1093 50.1 Plus
Alp1-PB 530 CG5656-PB 3..515 2..513 1084 47.2 Plus
Alp9-PB 517 CG5150-PB 48..510 43..512 1041 46.5 Plus
Alp9-PA 517 CG5150-PA 48..510 43..512 1041 46.5 Plus
Alp8-PB 533 CG3264-PB 6..525 3..512 908 39.7 Plus
Alp8-PA 533 CG3264-PA 6..525 3..512 908 39.7 Plus
Alp2-PA 538 CG3290-PA 37..525 20..512 897 40.3 Plus
Alp7-PA 543 CG3292-PA 64..533 42..512 864 41.5 Plus
Alp12-PE 596 CG16771-PE 70..581 5..514 824 38 Plus
Alp12-PD 596 CG16771-PD 70..581 5..514 824 38 Plus
Alp12-PC 596 CG16771-PC 70..581 5..514 824 38 Plus
Alp12-PB 596 CG16771-PB 70..581 5..514 824 38 Plus
Alp12-PA 596 CG16771-PA 70..581 5..514 824 38 Plus
Alp4-PA 596 CG1462-PA 47..542 39..513 800 38.6 Plus
Alp4-PB 502 CG1462-PB 1..448 83..513 737 39.1 Plus
Alp11-PA 483 CG8105-PA 31..467 38..512 721 37.4 Plus
Alp13-PB 479 CG5361-PB 30..364 6..352 212 25.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19888-PA 524 GI19888-PA 8..520 5..515 1826 66.9 Plus
Dmoj\GI13179-PA 525 GI13179-PA 37..519 25..515 1540 60.6 Plus
Dmoj\GI24012-PA 547 GI24012-PA 61..529 43..511 1203 52.4 Plus
Dmoj\GI12980-PA 503 GI12980-PA 14..488 41..513 1110 49.6 Plus
Dmoj\GI12135-PA 526 GI12135-PA 56..519 43..512 1110 49.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17170-PA 520 GL17170-PA 1..515 1..514 2165 78.9 Plus
Dper\GL12007-PA 538 GL12007-PA 1..530 1..514 1466 56.6 Plus
Dper\GL23248-PA 525 GL23248-PA 59..517 43..512 1097 49.5 Plus
Dper\GL16938-PA 533 GL16938-PA 35..523 20..512 935 42.5 Plus
Dper\GL13610-PA 392 GL13610-PA 56..392 37..380 892 53.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14786-PA 520 GA14786-PA 1..516 1..515 2177 79.3 Plus
Dpse\GA10422-PA 537 GA10422-PA 1..531 1..515 1478 56.7 Plus
Dpse\GA20850-PA 543 GA20850-PA 55..527 37..511 1244 53.9 Plus
Dpse\GA24639-PA 521 GA24639-PA 34..506 42..513 1105 48.7 Plus
Dpse\GA10582-PA 525 GA10582-PA 59..517 43..512 1102 49.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21133-PA 515 GM21133-PA 1..515 1..515 2701 98.1 Plus
Dsec\GM13909-PA 524 GM13909-PA 11..517 5..515 1536 58.3 Plus
Dsec\GM23808-PA 546 GM23808-PA 61..528 41..509 1212 52.7 Plus
Dsec\GM22140-PA 523 GM22140-PA 3..508 2..513 1130 48 Plus
Dsec\GM15118-PA 522 GM15118-PA 35..515 22..512 1115 48.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13186-PA 524 GD13186-PA 11..517 5..515 1537 58.3 Plus
Dsim\GD18617-PA 546 GD18617-PA 1..528 1..509 1215 49.3 Plus
Dsim\GD20021-PA 521 GD20021-PA 35..514 22..512 1049 47.3 Plus
Dsim\GD13892-PA 511 GD13892-PA 48..504 43..512 1017 45.8 Plus
Dsim\GD25137-PA 533 GD25137-PA 46..525 30..512 885 41.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15058-PA 524 GJ15058-PA 24..520 22..515 1846 70.4 Plus
Dvir\GJ11955-PA 528 GJ11955-PA 15..522 6..515 1545 59.1 Plus
Dvir\GJ23643-PA 545 GJ23643-PA 61..528 43..511 1237 53.8 Plus
Dvir\GJ10462-PA 520 GJ10462-PA 53..511 43..512 1140 51.3 Plus
Dvir\GJ13123-PA 521 GJ13123-PA 41..506 48..513 1124 51.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21822-PA 520 GK21822-PA 19..516 18..515 1761 67.9 Plus
Dwil\GK16879-PA 530 GK16879-PA 10..524 7..515 1524 57.8 Plus
Dwil\GK10963-PA 547 GK10963-PA 60..530 42..511 1225 52.4 Plus
Dwil\GK11139-PA 529 GK11139-PA 58..515 43..512 1115 49.9 Plus
Dwil\GK16996-PA 534 GK16996-PA 52..519 47..513 1114 50.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19286-PA 515 GE19286-PA 1..515 1..515 2643 95 Plus
Dyak\GE20547-PA 524 GE20547-PA 10..517 5..515 1553 59.1 Plus
Dyak\GE25953-PA 548 GE25953-PA 64..532 42..511 1205 52.4 Plus
Dyak\GE22974-PA 523 GE22974-PA 3..508 2..513 1129 47.8 Plus
Dyak\GE22333-PA 523 GE22333-PA 3..508 2..513 1125 47.6 Plus

GH04113.hyp Sequence

Translation from 34 to 1581

> GH04113.hyp
MARRFILLLVLAVCLSGSASGQRDHPRGRSFDAESHPIKYAEEQQTQYWV
DKAQAKLLSKLAEQESATTNKAKNVILFLGDGMSVHTVTATRNLLGDSAE
QVYFEGFPYTGLSKTYCVNRQVADSACTATAYLGGVKANYGTIGVNANVS
RYSCDGAANEEDRVLSIAHWAQAAGKDAGLVTTARVTHASPAGVYAHIAD
RNWENDWEVANRECDPEQTIDIARQLVEQPVGQQLKVILGGGRKNFIDAT
VNDEEGYPGKRTDGRHLIRSWLDQKKEANVSAKYVWSRKGLSLVDLENTD
YLLGLFANDHLPYNGDRDRKRSQLADPSLSELTEAAITVLSRNDKGFFLF
VEGARIDMAHHDTFAKRSLEDTAEFARAVQKARELTSEDDTLIVVTADHA
HVMSINGYPYRDQEITGLAQLADDNLPYTILSYANGPGYYSGYNRAEGRA
LLKEKLVADSDYQYPTLAPLDAETHGGDDVAVYASGPYAQYFSGNYEQSN
IPALMARAAGIGPYA*

GH04113.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-PA 515 CG1809-PA 1..515 1..515 2679 100 Plus
CG10592-PA 524 CG10592-PA 11..517 5..515 1488 57.9 Plus
CG8147-PA 546 CG8147-PA 1..528 1..509 1187 49.4 Plus
CG5656-PA 523 CG5656-PA 3..508 2..513 1101 47.8 Plus
CG10827-PA 522 CG10827-PA 57..515 43..512 1093 50.1 Plus