Clone GH04120 Report

Search the DGRC for GH04120

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:20
Vector:pOT2
Associated Gene/TranscriptCG7985-RA
Protein status:GH04120.pep: gold
Preliminary Size:2469
Sequenced Size:2628

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7985 2000-02-14 Blastp of sequenced clone
CG8064 2001-01-01 Release 2 assignment
CG7993 2001-01-01 Release 2 assignment
CG7985 2001-01-01 Release 2 assignment
CG7988 2001-01-01 Release 2 assignment
CG7998 2001-01-01 Release 2 assignment
CG7669 2001-01-01 Release 2 assignment
CG7671 2001-01-01 Release 2 assignment
CG8045 2001-01-01 Release 2 assignment
CG8053 2001-01-01 Release 2 assignment
CG12363 2001-01-01 Release 2 assignment
CG12364 2001-01-01 Release 2 assignment
CG18598 2001-01-01 Release 2 assignment
CG18599 2001-01-01 Release 2 assignment
CG14314 2001-01-01 Release 2 assignment
CG7985 2003-01-01 Sim4 clustering to Release 3
CG7985 2008-04-29 Release 5.5 accounting
CG7985 2008-08-15 Release 5.9 accounting
CG7985 2008-12-18 5.12 accounting

Clone Sequence Records

GH04120.complete Sequence

2628 bp (2628 high quality bases) assembled on 2000-02-14

GenBank Submission: AF181627

> GH04120.complete
CGCTACGTGCGCTGCGGTTTCCTGCTGTAATTCAAAGTTCTGCAATTCGC
GCGATTTCCACGCCATGCAGTTGAAGCAAATGGACTGTTGATTGACTGGC
CCTCAAGAGAGGAAAGCGGATTAAACGGCTTTAACAATGCACTCAAATCT
TTGGATATTTATTTGGCGCCGGAAACTTTCCTTCCTGCTCGTCGTGTCTG
GCCTGGTGCTTCTCGGCCTCTGGACATGGGCCATACTAATCGATACGACA
GCCTCAGCACAGCCTCCTGCCGCCCCCATTTCCAATTCTGAGCGCCAGCA
GCAGCAGCAGCAGTCCACGGGTTACCAGCAGGTGCACATCATCCAGAAGC
TTATCGAGCAGGCAAACCGGGTGCTGCGTGCCGAGCGGCTCAAGGATAAC
GCTGTCGAGAAATCGCCATCGCCAGTCCAGCGGCTGGGAAACGTGCGTTC
CCTGCGACCCACACAGGCCAAGAAGGCGCCGCTGCCCATGTCCGAGAGCT
TCCTGTTCGAGCAGGAGCGCCTCAAGATTCTGGAGCAGCAGCAGCGCCAG
AGAAACGCCGGTATGGAGGAACTGAACGCCAATGCCGAGGACGAGCGAAT
GCTCAGTTCGGCGGAGCGACAGACTCAGTACGAGCACGAGCTTCAGAGGA
TGGGCGTGCCGGTGGTGGCTGGCATCGGGCCGGATGGTCCGAGAGCTCCC
GCCGAGCGTCTCGTTCATCTGGACTTGAAGGGTGCTCCGCCTAAGCTAAG
CTTTCTCAAGCAACTGCTGCCCGTGCTGCGGGCACTGGGAGCCACTGGTC
TGCTCATAGAGTACGAGGACATGTTTCCCTACAGCGGAGTTCTTCAGCCG
CTGGCCGCGCACAATGCCTACAAGGAGGACGAACTGCGGGACTTCCTCGA
GTGCGCTGCCCTTCATGGACTGAGCGTAATGCCTCTCGTTCAAACCTTTG
GGCACATGGAATACGTCCTCAAACTCTCGGGCTTCGAGCAGCTGCGTGAG
CTGGCTGAGAGTCCACAGTCGATTTGCCCCAGCCAGCCACAGAGCATGGC
CCTGCTGGAGCAGATGCTCACCCAAGTGATCGAATTGCATTCGCAGTGCT
TGGGTCAGGCGACGCCCGCCACCAACGTTCCCGTGGCGCGAATCAGGTTC
ACCCATATTCACATCGGTTGTGACGAGGTGCAGCGCATGGGCGAGTGCAC
TACATGCCGCCAGAGGCTACGCAGTGAGCTCTTCCTCTCGCACGTGGTAA
GCATGGCGCACTTCATTCGCCGCCAGTGGCCGCACCTGGGTGTGGTAATC
TGGGACGACCAGTTGCGATCGATGTCCCTCAGCGAGCTGCAGCACTCGCA
AGTGGGCAGCTACGTGGAGCCGATGGTTTGGGTGTATGCCAGTGACATAT
ACCGATTCATTCAGCCACAGCTGTGGGATACCTATGCCAAGGTCTTTCCC
AGCGCCTGGACGGCGTCGGCTTTTAAGGGAGCCTTTGGTGAGAGCTTGTT
GGTGCCGCCGCTGCAGCATCATCTTGAGAACAACATCCGATGGCTGGCAG
TGATCGCCAAGGAAGGCGGACGCTTTTCAAAGGGATTAAGAGGTCTGGCA
CTGACCGGATGGCAGCGGTATGATCATTTCGCAGTACTCTGTGAACTTCT
GCCAGTAGGCATTCCCAGTCTGATGACGTCGCTGTCGACCGTCTCCAAGG
GCTACTTCAGCACTAATCCGCGGGACAATGAGCTGCTGCGTGTGCTGCAG
TGCGTCTTCCAGCCGGACAGTCGGCGATCGGGTCGACCCTGGCTGGAACT
GCATCCGAATGCCCATCACAGTCAGCTCTTTGCTGTCTGCAACTATCCGG
GTCACCTGGTCTTCAAATATGCCCTGCGCCTGTTTGACAAGCTGGCCGAG
ATCCGACTCTATTTGCAGCAGACCCGGGACCAGAGCGCCTGGCTCTCCGA
CTACAATGTTCGGCACAACTTCAGTTCGCCGCTGAGGGTGCGCGAACTGA
CTGCGAGGACGCCGATGTTGATCGAGGAGCTGCGGGCGATGGCGAGGGAG
GCACAGCAGCTGCTGTGGGAGGTATACGACGAGTACACGGTGACGGAGTT
TGTGGAGCAGCACATTTATCCCACCATCGAGGCACTGCAGCGCCAGTTGG
CCAGGGCGGAAATGCTGCTCCAGCGACGCACTTGGCCACAGAGACCACTG
CCTCTGCCCTTGAAAGTGCAGGAGGACATGGGACTGGTGACGCATCAGCA
GGAGCAACAATGAGAGGCGCCAGCCAAAATCTGACAATTGGCCTCGGGCC
AAATATGAGTTACATTGCTTTAATGGACTAATCGCCAACTGGCTGGCAGT
TCCTGCTCCGGATCTTAATCTACTCGCATAGTGATGGCGTTCGAAACGCC
CAAGCCCAGCATCTTGTGGCTTATAAGCCAGGATAATACGAATGTTAACA
GCAGCAGCGGCTTCTCGGCCCAAAATACATACATAATGGTAGCATTAGCC
ACTTGTAATACTAATAACATCAAATGTTCATTTTTTCTAGACTACTTTGT
AAGCAGCGGCTCAATTATACAAACATAGAACATATTCATACTGTAATAAA
AAATAAATCAAAAAAAAAAAAAAAAAAA

GH04120.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7985-RA 2727 CG7985-RA 100..2714 1..2615 13075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14037503..14038892 884..2273 6935 99.9 Plus
chr3R 27901430 chr3R 14036703..14037456 137..890 3770 100 Plus
chr3R 27901430 chr3R 14038958..14039295 2272..2609 1690 100 Plus
chr3R 27901430 chr3R 730633..730930 2316..2609 910 90.5 Plus
chr3R 27901430 chr3R 14024599..14024734 1..136 680 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18213209..18214598 884..2273 6935 99.9 Plus
3R 32079331 3R 18212409..18213162 137..890 3770 100 Plus
3R 32079331 3R 18214664..18215007 2272..2615 1720 100 Plus
3R 32079331 3R 4904952..4905254 2316..2614 935 90.6 Plus
3R 32079331 3R 18200305..18200440 1..136 680 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17954040..17955429 884..2273 6935 99.9 Plus
3R 31820162 3R 17953240..17953993 137..890 3770 100 Plus
3R 31820162 3R 17955495..17955838 2272..2615 1720 100 Plus
3R 31820162 3R 17941136..17941271 1..136 680 100 Plus
3R 31820162 3R 4645783..4645949 2316..2481 630 93.4 Plus
3R 31820162 3R 4645966..4646085 2491..2614 460 92.7 Plus
Blast to na_te.dros performed on 2019-03-16 02:10:15 has no hits.

GH04120.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:11:03 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14024599..14024734 1..136 100 -> Plus
chr3R 14036703..14037455 137..889 100 -> Plus
chr3R 14037509..14038892 890..2273 100 -> Plus
chr3R 14038960..14039295 2274..2609 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:04:13 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2127 137..2263 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:48 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2127 137..2263 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:04 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2127 137..2263 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:13 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2127 137..2263 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:59:37 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2127 137..2263 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:04:12 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2609 1..2609 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:48 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2609 1..2609 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:04 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2609 1..2609 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:13 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2609 1..2609 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:59:37 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
CG7985-RA 1..2609 1..2609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:11:03 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18200305..18200440 1..136 100 -> Plus
3R 18212409..18213161 137..889 100 -> Plus
3R 18213215..18214598 890..2273 100 -> Plus
3R 18214666..18215001 2274..2609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:11:03 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18200305..18200440 1..136 100 -> Plus
3R 18212409..18213161 137..889 100 -> Plus
3R 18213215..18214598 890..2273 100 -> Plus
3R 18214666..18215001 2274..2609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:11:03 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18200305..18200440 1..136 100 -> Plus
3R 18212409..18213161 137..889 100 -> Plus
3R 18213215..18214598 890..2273 100 -> Plus
3R 18214666..18215001 2274..2609 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:04 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14026027..14026162 1..136 100 -> Plus
arm_3R 14038131..14038883 137..889 100 -> Plus
arm_3R 14038937..14040320 890..2273 100 -> Plus
arm_3R 14040388..14040723 2274..2609 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:11 Download gff for GH04120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17953240..17953992 137..889 100 -> Plus
3R 17954046..17955429 890..2273 100 -> Plus
3R 17955497..17955832 2274..2609 100   Plus
3R 17941136..17941271 1..136 100 -> Plus

GH04120.pep Sequence

Translation from 136 to 2262

> GH04120.pep
MHSNLWIFIWRRKLSFLLVVSGLVLLGLWTWAILIDTTASAQPPAAPISN
SERQQQQQQSTGYQQVHIIQKLIEQANRVLRAERLKDNAVEKSPSPVQRL
GNVRSLRPTQAKKAPLPMSESFLFEQERLKILEQQQRQRNAGMEELNANA
EDERMLSSAERQTQYEHELQRMGVPVVAGIGPDGPRAPAERLVHLDLKGA
PPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNAYKEDEL
RDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQLRELAESPQSICPSQ
PQSMALLEQMLTQVIELHSQCLGQATPATNVPVARIRFTHIHIGCDEVQR
MGECTTCRQRLRSELFLSHVVSMAHFIRRQWPHLGVVIWDDQLRSMSLSE
LQHSQVGSYVEPMVWVYASDIYRFIQPQLWDTYAKVFPSAWTASAFKGAF
GESLLVPPLQHHLENNIRWLAVIAKEGGRFSKGLRGLALTGWQRYDHFAV
LCELLPVGIPSLMTSLSTVSKGYFSTNPRDNELLRVLQCVFQPDSRRSGR
PWLELHPNAHHSQLFAVCNYPGHLVFKYALRLFDKLAEIRLYLQQTRDQS
AWLSDYNVRHNFSSPLRVRELTARTPMLIEELRAMAREAQQLLWEVYDEY
TVTEFVEQHIYPTIEALQRQLARAEMLLQRRTWPQRPLPLPLKVQEDMGL
VTHQQEQQ*

GH04120.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18511-PA 704 GF18511-PA 5..702 2..705 3132 88 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22715-PA 706 GG22715-PA 1..706 1..708 3607 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15752-PA 744 GH15752-PA 33..734 1..703 2969 81.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7985-PB 708 CG7985-PB 1..708 1..708 3689 100 Plus
CG7985-PA 708 CG7985-PA 1..708 1..708 3689 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23723-PA 703 GI23723-PA 1..701 1..708 3009 81.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12597-PA 706 GL12597-PA 1..704 1..705 3180 87.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20741-PA 706 GA20741-PA 1..704 1..705 3170 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15285-PA 706 GM15285-PA 1..706 1..708 3697 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19213-PA 710 GD19213-PA 1..710 1..708 3702 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23281-PA 710 GJ23281-PA 1..693 1..702 3034 83.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11247-PA 690 GK11247-PA 1..680 1..698 2727 76.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25519-PA 828 GE25519-PA 125..828 1..706 3449 95.2 Plus

GH04120.hyp Sequence

Translation from 136 to 2262

> GH04120.hyp
MHSNLWIFIWRRKLSFLLVVSGLVLLGLWTWAILIDTTASAQPPAAPISN
SERQQQQQQSTGYQQVHIIQKLIEQANRVLRAERLKDNAVEKSPSPVQRL
GNVRSLRPTQAKKAPLPMSESFLFEQERLKILEQQQRQRNAGMEELNANA
EDERMLSSAERQTQYEHELQRMGVPVVAGIGPDGPRAPAERLVHLDLKGA
PPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNAYKEDEL
RDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQLRELAESPQSICPSQ
PQSMALLEQMLTQVIELHSQCLGQATPATNVPVARIRFTHIHIGCDEVQR
MGECTTCRQRLRSELFLSHVVSMAHFIRRQWPHLGVVIWDDQLRSMSLSE
LQHSQVGSYVEPMVWVYASDIYRFIQPQLWDTYAKVFPSAWTASAFKGAF
GESLLVPPLQHHLENNIRWLAVIAKEGGRFSKGLRGLALTGWQRYDHFAV
LCELLPVGIPSLMTSLSTVSKGYFSTNPRDNELLRVLQCVFQPDSRRSGR
PWLELHPNAHHSQLFAVCNYPGHLVFKYALRLFDKLAEIRLYLQQTRDQS
AWLSDYNVRHNFSSPLRVRELTARTPMLIEELRAMAREAQQLLWEVYDEY
TVTEFVEQHIYPTIEALQRQLARAEMLLQRRTWPQRPLPLPLKVQEDMGL
VTHQQEQQ*

GH04120.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7985-PB 708 CG7985-PB 1..708 1..708 3689 100 Plus
CG7985-PA 708 CG7985-PA 1..708 1..708 3689 100 Plus