Clone GH04125 Report

Search the DGRC for GH04125

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:25
Vector:pOT2
Associated Gene/TranscriptSpn42Dd-RB
Protein status:GH04125.pep: gold
Preliminary Size:1300
Sequenced Size:1186

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9456 2001-01-01 Release 2 assignment
CG9456 2003-02-17 Blastp of sequenced clone
Spn1 2008-04-29 Release 5.5 accounting
Spn1 2008-08-15 Release 5.9 accounting
Spn1 2008-12-18 5.12 accounting

Clone Sequence Records

GH04125.complete Sequence

1186 bp (1186 high quality bases) assembled on 2003-02-17

GenBank Submission: BT010110

> GH04125.complete
AGAGTTCGTTGTAGACGGTCAAATGTATTACTTGTGCATTTTCCTGTGGG
TCACTTCAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCC
AAGAGCCATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGAC
CATCCTTAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGC
TGCAGAGCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCC
AGGTACGGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCAT
ACTAAAGCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATC
AGAACTACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCC
ATTAGTCTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGT
GCTGGATCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCA
TGACGTCCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGC
CAGTGGGAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCA
AGTAACTGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAA
CATTCAGGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTG
CCGTACCTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGT
GGAGGGCTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGC
TGGTTGCCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAAATCGAATTT
CGTGATGAACTCAAAGAGACCTTAGAGAAGCTGGGCATCCGAGAGCTATT
CACCGACAAGTCAGACTTAAGCGGCTTGTTCGCCGATAAGTCAGGCGGCA
AAGTCAGTCAGGTCTCGCACAAGGCGTTTCTGGAGGTGAACGAGGAGGGA
GCGGAGGCCGCAGGTGCCACATCTGTGGCCGTCACAAATCGAGCGGGATT
TTCTACGTTCCTCATGGCCGATCATCCCTTTGCCTTCGTCATTCGCGATG
CGAACACCATATATTTCCAGGGGCGTGTTGTAAGCCCTTGAATAAATAAA
AACAATATTTAAATTTTAAAAAAAAAAAAAAAAAAA

GH04125.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Spn1-RB 1195 Spn1-RB 29..1195 1..1167 5835 100 Plus
Spn1-RA 1472 Spn1-RA 306..1472 1..1167 5835 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2770944..2771788 36..880 4225 100 Plus
chr2R 21145070 chr2R 2771844..2771988 878..1022 725 100 Plus
chr2R 21145070 chr2R 2772059..2772203 1023..1167 725 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6883614..6884458 36..880 4225 100 Plus
2R 25286936 2R 6884729..6884876 1023..1170 740 100 Plus
2R 25286936 2R 6884514..6884658 878..1022 725 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6884813..6885657 36..880 4225 100 Plus
2R 25260384 2R 6885928..6886075 1023..1170 740 100 Plus
2R 25260384 2R 6885713..6885857 878..1022 725 100 Plus
2R 25260384 2R 6884507..6884542 1..36 180 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:33:41 has no hits.

GH04125.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:34:43 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2770638..2770672 1..35 100 -> Plus
chr2R 2770944..2771788 36..880 100 -> Plus
chr2R 2771847..2771988 881..1022 100 -> Plus
chr2R 2772059..2772173 1023..1137 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:13:12 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RB 1..1119 23..1141 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:41 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RB 1..1119 23..1141 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:45:34 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 1..1119 23..1141 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:51 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RA 1..1119 23..1141 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:03:35 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 1..1119 23..1141 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:03:57 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RB 29..1195 1..1167 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:41 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RB 29..1195 1..1167 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:45:34 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 29..1195 1..1167 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:51 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RA 306..1472 1..1167 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:03:35 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 29..1195 1..1167 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:34:43 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6884729..6884873 1023..1167 100   Plus
2R 6883308..6883342 1..35 100 -> Plus
2R 6883614..6884458 36..880 100 -> Plus
2R 6884517..6884658 881..1022 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:34:43 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6884729..6884873 1023..1167 100   Plus
2R 6883308..6883342 1..35 100 -> Plus
2R 6883614..6884458 36..880 100 -> Plus
2R 6884517..6884658 881..1022 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:34:43 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6884729..6884873 1023..1167 100   Plus
2R 6883308..6883342 1..35 100 -> Plus
2R 6883614..6884458 36..880 100 -> Plus
2R 6884517..6884658 881..1022 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:45:34 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2770813..2770847 1..35 100 -> Plus
arm_2R 2771119..2771963 36..880 100 -> Plus
arm_2R 2772022..2772163 881..1022 100 -> Plus
arm_2R 2772234..2772378 1023..1167 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:12:30 Download gff for GH04125.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6884813..6885657 36..880 100 -> Plus
2R 6885716..6885857 881..1022 100 -> Plus
2R 6885928..6886072 1023..1167 100   Plus
2R 6884507..6884541 1..35 100 -> Plus

GH04125.hyp Sequence

Translation from 1 to 1140

> GH04125.hyp
EFVVDGQMYYLCIFLWVTSVACQTSKEIYQLLSKSHTNQNLVVSPVSIET
ILSMVFMGAEGSTAKELQSALGLPSEDKEAVAARYGALLNDLQGQEEGPI
LKLANRIYVNDQYSLNQNYNLAVREPFKSEAESISLTNGPVAAERINQWV
LDQTSGKIKGMIDPGSMTSDVKALLVNAIYFKGQWESKFDPAKTRASTFQ
VTANKSVPVQMMAQMGTFRANYFRDLDAQVIELPYLNSNLSMTIFLPREV
EGLSALEEKIVGFARPLVAKEVYLKLPKFKIEFRDELKETLEKLGIRELF
TDKSDLSGLFADKSGGKVSQVSHKAFLEVNEEGAEAAGATSVAVTNRAGF
STFLMADHPFAFVIRDANTIYFQGRVVSP*

GH04125.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-PB 372 CG9456-PB 1..372 8..379 1871 100 Plus
Spn38F-PA 372 CG9334-PA 1..370 8..379 884 49.7 Plus
Spn38F-PB 370 CG9334-PB 1..368 8..379 881 49.5 Plus
Spn28F-PA 375 CG8137-PA 1..373 8..379 854 47.9 Plus
Spn28B-PB 378 CG6717-PB 1..376 8..379 755 42.6 Plus

GH04125.pep Sequence

Translation from 22 to 1140

> GH04125.pep
MYYLCIFLWVTSVACQTSKEIYQLLSKSHTNQNLVVSPVSIETILSMVFM
GAEGSTAKELQSALGLPSEDKEAVAARYGALLNDLQGQEEGPILKLANRI
YVNDQYSLNQNYNLAVREPFKSEAESISLTNGPVAAERINQWVLDQTSGK
IKGMIDPGSMTSDVKALLVNAIYFKGQWESKFDPAKTRASTFQVTANKSV
PVQMMAQMGTFRANYFRDLDAQVIELPYLNSNLSMTIFLPREVEGLSALE
EKIVGFARPLVAKEVYLKLPKFKIEFRDELKETLEKLGIRELFTDKSDLS
GLFADKSGGKVSQVSHKAFLEVNEEGAEAAGATSVAVTNRAGFSTFLMAD
HPFAFVIRDANTIYFQGRVVSP*

GH04125.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13146-PA 360 GF13146-PA 3..359 16..372 1057 59.9 Plus
Dana\GF19634-PA 394 GF19634-PA 19..387 4..372 857 49.2 Plus
Dana\GF15866-PA 371 GF15866-PA 1..371 1..372 763 45.9 Plus
Dana\GF15865-PA 375 GF15865-PA 19..375 13..372 725 41.6 Plus
Dana\GF15869-PA 359 GF15869-PA 1..349 1..372 695 40 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23230-PA 372 GG23230-PA 1..372 1..372 1846 92.7 Plus
Dere\GG23463-PA 372 GG23463-PA 1..371 1..372 928 49.6 Plus
Dere\GG10484-PA 378 GG10484-PA 19..376 19..372 742 43.4 Plus
Dere\GG23231-PA 404 GG23231-PA 33..401 15..369 679 42.3 Plus
Dere\GG21843-PA 374 GG21843-PA 16..371 18..370 618 37.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20251-PA 377 GH20251-PA 16..372 18..371 590 36.7 Plus
Dgri\GH21519-PA 384 GH21519-PA 1..382 1..370 573 35.1 Plus
Dgri\GH22013-PA 401 GH22013-PA 12..379 18..372 560 33.3 Plus
Dgri\GH19862-PA 382 GH19862-PA 20..378 18..368 559 37.2 Plus
Dgri\GH23432-PA 384 GH23432-PA 36..384 33..372 526 33.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-PB 372 CG9456-PB 1..372 1..372 1871 100 Plus
Spn38F-PA 372 CG9334-PA 1..370 1..372 884 49.7 Plus
Spn38F-PB 370 CG9334-PB 1..368 1..372 881 49.5 Plus
Spn28F-PA 375 CG8137-PA 1..373 1..372 854 47.9 Plus
Spn28B-PB 378 CG6717-PB 1..376 1..372 755 42.6 Plus
Spn28B-PA 378 CG6717-PA 1..376 1..372 755 42.6 Plus
Spn28Da-PB 384 CG31902-PB 1..372 1..372 743 42.3 Plus
Spn42De-PB 386 CG9460-PB 16..383 16..369 653 40.5 Plus
Spn42De-PA 404 CG9460-PA 34..401 16..369 653 40.5 Plus
Spn55B-PA 374 CG10913-PA 16..371 18..370 622 37.9 Plus
Spn42Da-PJ 374 CG9453-PJ 17..360 18..358 597 39.8 Plus
Spn42Da-PI 406 CG9453-PI 49..392 18..358 597 39.8 Plus
Spn42Da-PA 392 CG9453-PA 17..377 18..370 595 38.5 Plus
Spn42Da-PB 424 CG9453-PB 49..409 18..370 595 38.5 Plus
Spn42Dc-PB 403 CG9455-PB 10..380 16..372 593 35.2 Plus
Spn42Dc-PA 403 CG9455-PA 10..380 16..372 593 35.2 Plus
Spn42Da-PL 379 CG9453-PL 17..376 18..369 587 38.7 Plus
Spn42Da-PK 379 CG9453-PK 17..376 18..369 587 38.7 Plus
Spn42Da-PH 379 CG9453-PH 17..376 18..369 587 38.7 Plus
Spn42Da-PF 411 CG9453-PF 49..408 18..369 587 38.7 Plus
Spn42Da-PE 411 CG9453-PE 49..408 18..369 587 38.7 Plus
Spn43Aa-PA 390 CG12172-PA 33..388 20..370 584 36.8 Plus
Spn42Da-PG 379 CG9453-PG 17..376 18..369 574 37.5 Plus
Spn42Da-PD 411 CG9453-PD 49..408 18..369 574 37.5 Plus
Spn28Db-PB 377 CG33121-PB 9..369 3..370 553 34.9 Plus
Spn47C-PC 382 CG7722-PC 19..382 18..372 534 33.5 Plus
Spn47C-PB 382 CG7722-PB 19..382 18..372 534 33.5 Plus
Spn47C-PA 382 CG7722-PA 19..382 18..372 534 33.5 Plus
nec-PA 476 CG1857-PA 111..471 18..372 459 31.5 Plus
Spn42Db-PC 388 CG9454-PC 17..375 21..371 443 31.3 Plus
Spn43Ab-PB 393 CG1865-PB 35..389 20..371 425 28.8 Plus
Spn27A-PB 447 CG11331-PB 84..443 24..372 389 29.7 Plus
Spn27A-PA 447 CG11331-PA 84..443 24..372 389 29.7 Plus
Spn53F-PB 379 CG10956-PB 21..378 16..371 360 26.5 Plus
Spn31A-PA 382 CG4804-PA 8..380 11..370 347 29.5 Plus
Spn88Eb-PA 426 CG6687-PA 42..421 18..372 331 28 Plus
Spn88Ea-PB 427 CG18525-PB 50..417 24..367 330 30.8 Plus
Spn88Ea-PA 427 CG18525-PA 50..417 24..367 330 30.8 Plus
Spn42Db-PD 286 CG9454-PD 17..282 21..284 314 31 Plus
Spn43Ad-PA 407 CG1859-PA 47..405 25..370 305 26.6 Plus
Spn28Dc-PA 536 CG7219-PA 130..532 35..372 273 24.8 Plus
Spn77Ba-PC 450 CG6680-PC 95..447 31..372 272 27.4 Plus
Spn77Ba-PB 450 CG6680-PB 95..447 31..372 272 27.4 Plus
Spn77Ba-PA 450 CG6680-PA 95..447 31..372 272 27.4 Plus
Spn75F-PB 356 CG32203-PB 11..353 6..369 223 23 Plus
Spn100A-PA 649 CG1342-PA 296..580 53..340 190 23.5 Plus
Spn77Bb-PA 362 CG6663-PA 13..342 44..357 183 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19420-PA 376 GI19420-PA 16..372 18..371 598 37.2 Plus
Dmoj\GI19487-PA 384 GI19487-PA 27..382 20..370 571 35.9 Plus
Dmoj\GI19810-PA 401 GI19810-PA 20..380 18..370 547 36.8 Plus
Dmoj\GI19718-PA 395 GI19718-PA 30..378 33..372 538 36.1 Plus
Dmoj\GI20049-PA 503 GI20049-PA 138..496 18..372 517 34.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11125-PA 404 GL11125-PA 10..380 16..372 629 37.5 Plus
Dper\GL13961-PA 417 GL13961-PA 57..417 20..372 600 37.3 Plus
Dper\GL10534-PA 376 GL10534-PA 16..372 18..371 595 36.7 Plus
Dper\GL11156-PA 390 GL11156-PA 31..388 18..370 586 37.1 Plus
Dper\GL11126-PA 421 GL11126-PA 55..421 18..372 584 37.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24617-PA 375 GA24617-PA 2..375 1..372 1135 56.7 Plus
Dpse\GA21800-PA 404 GA21800-PA 10..380 16..372 622 37.5 Plus
Dpse\GA10637-PA 376 GA10637-PA 16..372 18..371 599 36.9 Plus
Dpse\GA11452-PA 390 GA11452-PA 31..388 18..370 587 37.1 Plus
Dpse\GA26905-PA 417 GA26905-PA 57..417 20..372 587 36.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20904-PA 372 GM20904-PA 1..372 1..372 1912 96.8 Plus
Dsec\GM16481-PA 397 GM16481-PA 23..395 4..372 738 42.9 Plus
Dsec\GM21844-PA 374 GM21844-PA 16..371 18..370 623 37.9 Plus
Dsec\GM20903-PA 403 GM20903-PA 33..380 33..372 612 36.9 Plus
Dsec\GM20933-PA 390 GM20933-PA 31..388 18..370 606 37.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Spn2-PA 374 GD22426-PA 1..373 1..372 879 49.7 Plus
Dsim\GD23476-PA 397 GD23476-PA 29..395 10..372 751 43.4 Plus
Dsim\GD22458-PA 339 GD22458-PA 1..328 45..372 691 43.1 Plus
Dsim\GD10433-PA 598 GD10433-PA 244..595 32..369 646 41.2 Plus
Dsim\GD11338-PA 374 GD11338-PA 16..371 18..370 624 37.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22484-PA 376 GJ22484-PA 16..372 18..371 623 36.9 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 33..379 33..372 584 35.3 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 28..385 18..370 572 35.7 Plus
Dvir\GJ18486-PA 377 GJ18486-PA 20..374 18..368 543 36.6 Plus
Dvir\GJ18186-PA 384 GJ18186-PA 36..384 33..372 504 32 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20885-PA 422 GK20885-PA 35..382 33..372 640 38.4 Plus
Dwil\GK22245-PA 374 GK22245-PA 16..372 18..371 612 37.5 Plus
Dwil\GK20759-PA 401 GK20759-PA 40..397 18..372 599 37.3 Plus
Dwil\GK20760-PA 433 GK20760-PA 54..400 18..357 595 38 Plus
Dwil\GK21791-PA 365 GK21791-PA 8..363 20..370 581 38.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19081-PA 374 GE19081-PA 1..374 1..372 1796 90.1 Plus
Dyak\GE11098-PA 375 GE11098-PA 1..374 1..372 919 48.3 Plus
Dyak\Spn2-PA 372 GE11095-PA 1..371 1..372 898 48.9 Plus
Dyak\GE14581-PA 335 GE14581-PA 1..333 44..372 664 40.6 Plus
Dyak\GE11922-PA 374 GE11922-PA 16..371 18..370 633 38.2 Plus