Clone GH04176 Report

Search the DGRC for GH04176

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:76
Vector:pOT2
Associated Gene/TranscriptSip1-RA
Protein status:GH04176.pep: gold
Preliminary Size:2200
Sequenced Size:1717

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10939 2001-01-01 Release 2 assignment
CG10939 2001-07-04 Blastp of sequenced clone
CG10939 2003-01-01 Sim4 clustering to Release 3
Sip1 2008-04-29 Release 5.5 accounting
Sip1 2008-08-15 Release 5.9 accounting
Sip1 2008-12-18 5.12 accounting

Clone Sequence Records

GH04176.complete Sequence

1717 bp (1717 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047533

> GH04176.complete
CGCGAAAGCGTTAACAACGTTTCAACGGATCTTCAGCGTGTGAGATAATA
TTACATACGTAGAAATAATATCAGGAAGGCAGCAGCAACAGCAGCAAAAA
CAACGCGAGTAGCCCTCTCTCTGCGCCTCTTTCGCCTGTCAACAGTTATT
TTAGCCGATTGTTTTGTGTGACTTTTTCGTGTGCTGTTCGCTTTCGTTTC
GTTTAGCTGTTCGGCAACTCCTTCATTTCATTAAAAATAGTAAGGCCTTG
TAACAACAACAACAAGAACGACGACGTGTTTATGTGTGTGTATGTGACAG
CGTTTGCATACGGAAAAGAGTAGAGAGTGCAACAATAATAACTGCAACAA
AAACAGAAAACTGAAAATCAACAGCAACATTTGAAAGGGAATCGTTTCTA
CTTGTTTGTTTAAGCGAAGTCAAGATGTCCACGCCCACTTCCCCGAAGAC
GCCCACACCGCCCACTTTGCCACCGGGCGTGACCAAAACATGTCACATTG
TGAAAAGGCCCGATTTCGATGGCTATGGTTTCAATTTGCATTCGGAGAAG
GTGAAACCAGGACAGTTTATTGGCAAAGTAGATGCGGATTCTCCGGCAGA
GGCAGCCGGCCTGAAGGAGGGCGATCGCATCCTGGAGGTCAACGGGGTGT
CCATTGGCAGCGAGACCCACAAGCAGGTGGTTGCCAGGATCAAGGCCATT
GCGAATGAAGTCCGCTTGCTGCTCATCGATGTGGATGGCAAGGCCTTGGA
GGTGAAACCGGCATCTCCGCCAGCCGCTGCGTGCAATGGAAACGGTAGTG
CCAGTCAGAATGGATACGAGGGCACCAAACAGGAGATGCCCGGAGCAAGT
GCCAATATCAGTAGCATCAGTATGGTGAGCACCAAGCGATCCTCAAATGC
CAGCAGCATTCAGAGCGGCAGTACCATGAATGCCTCCGATTTGGATGTGG
TCGATAGGGGAATACCGGCAGTCGCTGCTCCGGTGGCTATCACCCCGCCT
CCCGTTCAAAATGGAAGTAAACCCTCATCGCCGATTAATAATAACACTTT
GATGAGCACACCGCCACCGCCGTCCGCTACTAAGGCTGGCATCAACAACA
ATGGCAGTGTTTATAACACCAATGGAAATGGTACAAATGGCATGACCACA
CCCACTACACCACCCCCACCGACCAGTGGCTATAAGGCGGGCACCTTGCA
TTTACCAATGACGGCCGCCGAAATGCGCGCCAAATTGGCATCCAAGAAGA
AGTACGATCCCAAGAACGAGAGTGTGGACCTCAAGAAGAAGTTCGACATC
ATTCAGAAGCTCTGAGACGAAAAGGGTAGCCCAACCAACTACTTGTTATA
ATGTCAGGATGAGGAGCTAGAGCTGGTTTTGTCAGGCATACACCACACCA
CACAATATACAATATGTTTAGCTATTAGTACGAAGAGTCACTTATTAACT
AAGCAAGTTTTTAATTATTACCCCCTAAGAGAAAGAGCGACCAACGATGG
TAGAGTAAACGGATATGATGGAGCACCTACCCTTGGAATATCTATACATT
GTACGACATACGCGTATTCTTCAAATTCAAATATTGCAAACTCCGATTGG
CAATGTTGCCCTGGTTCATTGAACAACTTTCATTGAATATGTACTTAGTT
TTGCTTGTATTTTTGTAAAGTAAATAAAGCAAAAATATAAAAGAAATACA
AAAAAAAAAAAAAAAAA

GH04176.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sip1-RA 1909 Sip1-RA 103..1803 1..1701 8505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13290944..13292227 416..1699 6345 99.6 Plus
chr2R 21145070 chr2R 13281663..13282078 1..416 2080 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17403888..17405173 416..1701 6430 100 Plus
2R 25286936 2R 17394611..17395026 1..416 2080 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17405087..17406372 416..1701 6430 100 Plus
2R 25260384 2R 17395810..17396225 1..416 2080 100 Plus
Blast to na_te.dros performed 2019-03-15 15:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1102..1151 53..104 120 73.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6808..6869 53..113 118 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2407 314..379 114 63.6 Plus

GH04176.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:41:27 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13281663..13282078 1..416 100 -> Plus
chr2R 13290945..13292227 417..1699 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:37:20 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 1..891 425..1315 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:51 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 1..891 425..1315 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:36:22 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 1..891 425..1315 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:17 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 1..891 425..1315 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:12:43 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 1..891 425..1315 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:37:20 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 16..1714 1..1699 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:51 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 16..1714 1..1699 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:36:22 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 19..1717 1..1699 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:17 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 16..1714 1..1699 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:12:43 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 19..1717 1..1699 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:27 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17394611..17395026 1..416 100 -> Plus
2R 17403889..17405171 417..1699 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:27 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17394611..17395026 1..416 100 -> Plus
2R 17403889..17405171 417..1699 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:27 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17394611..17395026 1..416 100 -> Plus
2R 17403889..17405171 417..1699 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:36:22 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13282116..13282531 1..416 100 -> Plus
arm_2R 13291394..13292676 417..1699 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:20 Download gff for GH04176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17395810..17396225 1..416 100 -> Plus
2R 17405088..17406370 417..1699 100   Plus

GH04176.pep Sequence

Translation from 424 to 1314

> GH04176.pep
MSTPTSPKTPTPPTLPPGVTKTCHIVKRPDFDGYGFNLHSEKVKPGQFIG
KVDADSPAEAAGLKEGDRILEVNGVSIGSETHKQVVARIKAIANEVRLLL
IDVDGKALEVKPASPPAAACNGNGSASQNGYEGTKQEMPGASANISSISM
VSTKRSSNASSIQSGSTMNASDLDVVDRGIPAVAAPVAITPPPVQNGSKP
SSPINNNTLMSTPPPPSATKAGINNNGSVYNTNGNGTNGMTTPTTPPPPT
SGYKAGTLHLPMTAAEMRAKLASKKKYDPKNESVDLKKKFDIIQKL*

GH04176.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11451-PA 298 GF11451-PA 18..298 18..296 1102 87.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20674-PA 297 GG20674-PA 1..297 1..296 1470 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21023-PA 360 GH21023-PA 18..360 18..296 941 63.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10939-PA 296 CG10939-PA 1..296 1..296 1529 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18623-PA 328 GI18623-PA 21..328 21..296 929 68.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10079-PA 322 GL10079-PA 18..322 18..296 1038 73.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10655-PA 323 GA10655-PA 18..323 18..296 1047 74.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21769-PA 296 GM21769-PA 1..296 1..296 1508 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11262-PA 298 GD11262-PA 1..298 1..296 1490 98 Plus
Dsim\GD15435-PA 123 GD15435-PA 12..123 185..296 558 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21632-PA 324 GJ21632-PA 18..324 18..296 989 68.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17877-PA 317 GK17877-PA 16..317 18..296 982 73.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11657-PA 297 GE11657-PA 18..297 18..296 1273 93.9 Plus

GH04176.hyp Sequence

Translation from 424 to 1314

> GH04176.hyp
MSTPTSPKTPTPPTLPPGVTKTCHIVKRPDFDGYGFNLHSEKVKPGQFIG
KVDADSPAEAAGLKEGDRILEVNGVSIGSETHKQVVARIKAIANEVRLLL
IDVDGKALEVKPASPPAAACNGNGSASQNGYEGTKQEMPGASANISSISM
VSTKRSSNASSIQSGSTMNASDLDVVDRGIPAVAAPVAITPPPVQNGSKP
SSPINNNTLMSTPPPPSATKAGINNNGSVYNTNGNGTNGMTTPTTPPPPT
SGYKAGTLHLPMTAAEMRAKLASKKKYDPKNESVDLKKKFDIIQKL*

GH04176.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sip1-PA 296 CG10939-PA 1..296 1..296 1529 100 Plus