BDGP Sequence Production Resources |
Search the DGRC for GH04176
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 41 |
Well: | 76 |
Vector: | pOT2 |
Associated Gene/Transcript | Sip1-RA |
Protein status: | GH04176.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1717 |
Gene | Date | Evidence |
---|---|---|
CG10939 | 2001-01-01 | Release 2 assignment |
CG10939 | 2001-07-04 | Blastp of sequenced clone |
CG10939 | 2003-01-01 | Sim4 clustering to Release 3 |
Sip1 | 2008-04-29 | Release 5.5 accounting |
Sip1 | 2008-08-15 | Release 5.9 accounting |
Sip1 | 2008-12-18 | 5.12 accounting |
1717 bp (1717 high quality bases) assembled on 2001-07-04
GenBank Submission: AY047533
> GH04176.complete CGCGAAAGCGTTAACAACGTTTCAACGGATCTTCAGCGTGTGAGATAATA TTACATACGTAGAAATAATATCAGGAAGGCAGCAGCAACAGCAGCAAAAA CAACGCGAGTAGCCCTCTCTCTGCGCCTCTTTCGCCTGTCAACAGTTATT TTAGCCGATTGTTTTGTGTGACTTTTTCGTGTGCTGTTCGCTTTCGTTTC GTTTAGCTGTTCGGCAACTCCTTCATTTCATTAAAAATAGTAAGGCCTTG TAACAACAACAACAAGAACGACGACGTGTTTATGTGTGTGTATGTGACAG CGTTTGCATACGGAAAAGAGTAGAGAGTGCAACAATAATAACTGCAACAA AAACAGAAAACTGAAAATCAACAGCAACATTTGAAAGGGAATCGTTTCTA CTTGTTTGTTTAAGCGAAGTCAAGATGTCCACGCCCACTTCCCCGAAGAC GCCCACACCGCCCACTTTGCCACCGGGCGTGACCAAAACATGTCACATTG TGAAAAGGCCCGATTTCGATGGCTATGGTTTCAATTTGCATTCGGAGAAG GTGAAACCAGGACAGTTTATTGGCAAAGTAGATGCGGATTCTCCGGCAGA GGCAGCCGGCCTGAAGGAGGGCGATCGCATCCTGGAGGTCAACGGGGTGT CCATTGGCAGCGAGACCCACAAGCAGGTGGTTGCCAGGATCAAGGCCATT GCGAATGAAGTCCGCTTGCTGCTCATCGATGTGGATGGCAAGGCCTTGGA GGTGAAACCGGCATCTCCGCCAGCCGCTGCGTGCAATGGAAACGGTAGTG CCAGTCAGAATGGATACGAGGGCACCAAACAGGAGATGCCCGGAGCAAGT GCCAATATCAGTAGCATCAGTATGGTGAGCACCAAGCGATCCTCAAATGC CAGCAGCATTCAGAGCGGCAGTACCATGAATGCCTCCGATTTGGATGTGG TCGATAGGGGAATACCGGCAGTCGCTGCTCCGGTGGCTATCACCCCGCCT CCCGTTCAAAATGGAAGTAAACCCTCATCGCCGATTAATAATAACACTTT GATGAGCACACCGCCACCGCCGTCCGCTACTAAGGCTGGCATCAACAACA ATGGCAGTGTTTATAACACCAATGGAAATGGTACAAATGGCATGACCACA CCCACTACACCACCCCCACCGACCAGTGGCTATAAGGCGGGCACCTTGCA TTTACCAATGACGGCCGCCGAAATGCGCGCCAAATTGGCATCCAAGAAGA AGTACGATCCCAAGAACGAGAGTGTGGACCTCAAGAAGAAGTTCGACATC ATTCAGAAGCTCTGAGACGAAAAGGGTAGCCCAACCAACTACTTGTTATA ATGTCAGGATGAGGAGCTAGAGCTGGTTTTGTCAGGCATACACCACACCA CACAATATACAATATGTTTAGCTATTAGTACGAAGAGTCACTTATTAACT AAGCAAGTTTTTAATTATTACCCCCTAAGAGAAAGAGCGACCAACGATGG TAGAGTAAACGGATATGATGGAGCACCTACCCTTGGAATATCTATACATT GTACGACATACGCGTATTCTTCAAATTCAAATATTGCAAACTCCGATTGG CAATGTTGCCCTGGTTCATTGAACAACTTTCATTGAATATGTACTTAGTT TTGCTTGTATTTTTGTAAAGTAAATAAAGCAAAAATATAAAAGAAATACA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sip1-RA | 1909 | Sip1-RA | 103..1803 | 1..1701 | 8505 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 1102..1151 | 53..104 | 120 | 73.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6869 | 53..113 | 118 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2407 | 314..379 | 114 | 63.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13281663..13282078 | 1..416 | 100 | -> | Plus |
chr2R | 13290945..13292227 | 417..1699 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 1..891 | 425..1315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 1..891 | 425..1315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 1..891 | 425..1315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 1..891 | 425..1315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 1..891 | 425..1315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 16..1714 | 1..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 16..1714 | 1..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 19..1717 | 1..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 16..1714 | 1..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sip1-RA | 19..1717 | 1..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17394611..17395026 | 1..416 | 100 | -> | Plus |
2R | 17403889..17405171 | 417..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17394611..17395026 | 1..416 | 100 | -> | Plus |
2R | 17403889..17405171 | 417..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17394611..17395026 | 1..416 | 100 | -> | Plus |
2R | 17403889..17405171 | 417..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13282116..13282531 | 1..416 | 100 | -> | Plus |
arm_2R | 13291394..13292676 | 417..1699 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17395810..17396225 | 1..416 | 100 | -> | Plus |
2R | 17405088..17406370 | 417..1699 | 100 | Plus |
Translation from 424 to 1314
> GH04176.pep MSTPTSPKTPTPPTLPPGVTKTCHIVKRPDFDGYGFNLHSEKVKPGQFIG KVDADSPAEAAGLKEGDRILEVNGVSIGSETHKQVVARIKAIANEVRLLL IDVDGKALEVKPASPPAAACNGNGSASQNGYEGTKQEMPGASANISSISM VSTKRSSNASSIQSGSTMNASDLDVVDRGIPAVAAPVAITPPPVQNGSKP SSPINNNTLMSTPPPPSATKAGINNNGSVYNTNGNGTNGMTTPTTPPPPT SGYKAGTLHLPMTAAEMRAKLASKKKYDPKNESVDLKKKFDIIQKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11451-PA | 298 | GF11451-PA | 18..298 | 18..296 | 1102 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20674-PA | 297 | GG20674-PA | 1..297 | 1..296 | 1470 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21023-PA | 360 | GH21023-PA | 18..360 | 18..296 | 941 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10939-PA | 296 | CG10939-PA | 1..296 | 1..296 | 1529 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18623-PA | 328 | GI18623-PA | 21..328 | 21..296 | 929 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10079-PA | 322 | GL10079-PA | 18..322 | 18..296 | 1038 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10655-PA | 323 | GA10655-PA | 18..323 | 18..296 | 1047 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21769-PA | 296 | GM21769-PA | 1..296 | 1..296 | 1508 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11262-PA | 298 | GD11262-PA | 1..298 | 1..296 | 1490 | 98 | Plus |
Dsim\GD15435-PA | 123 | GD15435-PA | 12..123 | 185..296 | 558 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21632-PA | 324 | GJ21632-PA | 18..324 | 18..296 | 989 | 68.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17877-PA | 317 | GK17877-PA | 16..317 | 18..296 | 982 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11657-PA | 297 | GE11657-PA | 18..297 | 18..296 | 1273 | 93.9 | Plus |
Translation from 424 to 1314
> GH04176.hyp MSTPTSPKTPTPPTLPPGVTKTCHIVKRPDFDGYGFNLHSEKVKPGQFIG KVDADSPAEAAGLKEGDRILEVNGVSIGSETHKQVVARIKAIANEVRLLL IDVDGKALEVKPASPPAAACNGNGSASQNGYEGTKQEMPGASANISSISM VSTKRSSNASSIQSGSTMNASDLDVVDRGIPAVAAPVAITPPPVQNGSKP SSPINNNTLMSTPPPPSATKAGINNNGSVYNTNGNGTNGMTTPTTPPPPT SGYKAGTLHLPMTAAEMRAKLASKKKYDPKNESVDLKKKFDIIQKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sip1-PA | 296 | CG10939-PA | 1..296 | 1..296 | 1529 | 100 | Plus |