Clone GH04180 Report

Search the DGRC for GH04180

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:80
Vector:pOT2
Associated Gene/TranscriptCG16758-RB
Protein status:GH04180.pep: gold
Sequenced Size:1556

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16758 2003-01-01 Sim4 clustering to Release 3
CG16758 2004-03-31 Blastp of sequenced clone
CG16758 2008-04-29 Release 5.5 accounting
CG16758 2008-08-15 Release 5.9 accounting
CG16758 2008-12-18 5.12 accounting

Clone Sequence Records

GH04180.complete Sequence

1556 bp (1556 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012502

> GH04180.complete
GTCGAGCAGGCAACAAACGTGAAGAAAGTGCACATAGTACCATACCACAT
ATATGTGCATACCATATCATCGAGTTCTGGACGCGGTCATAAAATATCAT
TTGTGAAACGTAACGAGATTACAAAAGGAATTCCAGTTCCAGATTTCTAA
ATTAGTTTTGATTCGCGAAATAGAAAACGTGCACAGTTGATTTTATCATA
ACTTGAAGCGCGAAATTCACATTTGCATAACCAGAAGAAGCGCGTCCGAG
GCGATTATATAATTGCAGTGTATTTCGATTGAGCAAGAGCATCTCCAACT
TCAGCTGCACAATGACGGGTTACAAGGTGGCCAATGGCAATGGACACAGC
AATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACACAGCAA
TGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGGAAATG
GAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTCGGGTT
CTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCCGACTT
CATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTGCGGCT
CTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCTTCGAG
TATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCATGCCGG
ACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGATGCAGG
GCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAATGCCG
GTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACCAATGC
GGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCTGATGC
ATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCCAGGGA
CCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAACTCGTA
CAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCATGGGCA
TAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTCCCAAC
TACGAGACCATCGCCGAGCTGAAGGCCCTGCGCATGATGGGCGTGGATGC
GGTGGGCATGTCCACCGTACATGAGGTCATCACTGCACGGCACTGCGACA
TGAAGGTATTCGCCTTCAGCCTCATCACAAATAAGTGCGCCACCGAGTAC
AGCGATAAGAAGGACGATGAGGCCAACCACGATGAGGTTATGGCTGTGGC
CAAGAACAGGCAAAAGGCCTGCTGCGAACTGGTCTCCCGACTCATCCGGG
AAATCCACTTGGCATCCGCTTAAGTAGCGAAGCGAAGAAGTAGCGTTGGA
TTCTAAATTTAAAAATAGTTAATTCTCTGAGCTCGCATCTAAGACTCACA
TGACACGGATTGTCCAAAATCTTACAGTATAGGCCTAGGGAATAGTTTAA
CTAAATTATGTAAAATAAACTAGCTATATCACAATTTCAAAAAAAAAAAA
AAAAAA

GH04180.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RB 2506 CG16758-RB 301..1839 1..1539 7695 100 Plus
CG16758.a 3016 CG16758.a 811..2349 1..1539 7695 100 Plus
CG16758-RD 2434 CG16758-RD 740..1767 512..1539 5140 100 Plus
CG16758-RD 2434 CG16758-RD 301..742 1..442 2210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2499201..2499979 1288..510 3880 99.9 Minus
chr3L 24539361 chr3L 2502655..2503096 442..1 2165 99.3 Minus
chr3L 24539361 chr3L 2498884..2499137 1538..1285 1270 100 Minus
chr3L 24539361 chr3L 2500580..2500653 516..443 370 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2499689..2500467 1288..510 3880 99.9 Minus
3L 28110227 3L 2503143..2503584 442..1 2210 100 Minus
3L 28110227 3L 2499371..2499625 1539..1285 1275 100 Minus
3L 28110227 3L 2501068..2501141 516..443 370 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2499689..2500467 1288..510 3880 99.8 Minus
3L 28103327 3L 2503143..2503584 442..1 2210 100 Minus
3L 28103327 3L 2499371..2499625 1539..1285 1275 100 Minus
3L 28103327 3L 2501068..2501141 516..443 370 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:07:38 has no hits.

GH04180.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:08:32 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2498884..2499135 1287..1538 100 <- Minus
chr3L 2499203..2499974 515..1286 100 <- Minus
chr3L 2500582..2500653 443..514 100 <- Minus
chr3L 2502655..2503096 1..442 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:13:15 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1062 312..1373 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:51 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1062 312..1373 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:56:18 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1062 312..1373 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:36 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1062 312..1373 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:56:27 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1062 312..1373 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:58 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1538 1..1538 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:51 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1538 1..1538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:18 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 23..1560 1..1538 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:36 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1538 1..1538 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:56:27 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 23..1560 1..1538 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:32 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2501070..2501141 443..514 100 <- Minus
3L 2499372..2499623 1287..1538 100 <- Minus
3L 2499691..2500462 515..1286 100 <- Minus
3L 2503143..2503584 1..442 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:32 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2501070..2501141 443..514 100 <- Minus
3L 2499372..2499623 1287..1538 100 <- Minus
3L 2499691..2500462 515..1286 100 <- Minus
3L 2503143..2503584 1..442 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:32 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2501070..2501141 443..514 100 <- Minus
3L 2499372..2499623 1287..1538 100 <- Minus
3L 2499691..2500462 515..1286 100 <- Minus
3L 2503143..2503584 1..442 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:18 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2499372..2499623 1287..1538 100 <- Minus
arm_3L 2499691..2500462 515..1286 100 <- Minus
arm_3L 2501070..2501141 443..514 100 <- Minus
arm_3L 2503143..2503584 1..442 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:00:01 Download gff for GH04180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2499372..2499623 1287..1538 100 <- Minus
3L 2499691..2500462 515..1286 100 <- Minus
3L 2501070..2501141 443..514 100 <- Minus
3L 2503143..2503584 1..442 100   Minus

GH04180.pep Sequence

Translation from 311 to 1372

> GH04180.pep
MTGYKVANGNGHSNGNGNTKGTNGTNGHSNGHKSADYTAQENPTGNGKIQ
CELTHEELRALRVLNEDTYPYEVIEEIADFITKGSGMRPKIGIICGSGLG
SLADMIQDPKIFEYEKIPNFPVSTVEGHAGRLVVGTLEGATVMAMQGRFH
FYEGYPLAKCSMPVRVMKLCGVEYLFATNAAGGINPRFAVGDIMLMHDHV
NMLGFAGNSPLQGPNDPRFGPRFPALVNSYNKDLINKAIEIAKAMGIESN
IHVGVYSCLGGPNYETIAELKALRMMGVDAVGMSTVHEVITARHCDMKVF
AFSLITNKCATEYSDKKDDEANHDEVMAVAKNRQKACCELVSRLIREIHL
ASA*

GH04180.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24862-PA 418 GF24862-PA 111..417 47..353 1559 92.8 Plus
Dana\GF11825-PA 337 GF11825-PA 45..327 69..349 624 42.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14512-PA 351 GG14512-PA 1..350 1..352 1821 96.9 Plus
Dere\GG20005-PA 338 GG20005-PA 45..336 69..350 629 42.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15756-PA 390 GH15756-PA 1..387 1..349 1527 76.3 Plus
Dgri\GH20577-PA 323 GH20577-PA 46..320 69..349 715 48.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PB 353 CG16758-PB 1..353 1..353 1866 100 Plus
CG16758-PH 396 CG16758-PH 1..396 1..353 1812 89.1 Plus
CG16758-PD 329 CG16758-PD 1..329 1..353 1706 93.2 Plus
CG16758-PG 372 CG16758-PG 1..372 1..353 1702 89 Plus
CG16758-PF 328 CG16758-PF 44..328 69..353 1494 100 Plus
CG16758-PE 321 CG16758-PE 37..321 69..353 1494 100 Plus
CG18128-PA 339 CG18128-PA 45..337 69..350 626 43.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12534-PA 392 GI12534-PA 1..389 1..349 1516 74.8 Plus
Dmoj\GI19771-PA 323 GI19771-PA 44..320 67..349 654 43 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17590-PA 330 GL17590-PA 44..327 67..349 734 49.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14131-PA 396 GA14131-PA 1..396 1..352 1535 75.3 Plus
Dpse\GA14805-PA 333 GA14805-PA 44..330 67..349 722 49.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14117-PA 396 GM14117-PA 1..396 1..353 1819 88.1 Plus
Dsec\GM15517-PA 339 GM15517-PA 45..337 69..350 628 42.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13387-PA 396 GD13387-PA 1..396 1..353 1815 87.9 Plus
Dsim\GD25021-PA 339 GD25021-PA 45..337 69..350 638 43.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16051-PA 408 GJ16051-PA 102..408 46..352 1525 90.9 Plus
Dvir\GJ18292-PA 325 GJ18292-PA 48..322 69..349 756 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12508-PA 413 GK12508-PA 60..413 1..352 1524 81.4 Plus
Dwil\GK23168-PA 324 GK23168-PA 46..321 69..349 730 48.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21703-PA 394 GE21703-PA 1..394 1..353 1782 86.9 Plus
Dyak\GE11540-PA 335 GE11540-PA 45..333 69..350 638 43 Plus

GH04180.hyp Sequence

Translation from 311 to 1372

> GH04180.hyp
MTGYKVANGNGHSNGNGNTKGTNGTNGHSNGHKSADYTAQENPTGNGKIQ
CELTHEELRALRVLNEDTYPYEVIEEIADFITKGSGMRPKIGIICGSGLG
SLADMIQDPKIFEYEKIPNFPVSTVEGHAGRLVVGTLEGATVMAMQGRFH
FYEGYPLAKCSMPVRVMKLCGVEYLFATNAAGGINPRFAVGDIMLMHDHV
NMLGFAGNSPLQGPNDPRFGPRFPALVNSYNKDLINKAIEIAKAMGIESN
IHVGVYSCLGGPNYETIAELKALRMMGVDAVGMSTVHEVITARHCDMKVF
AFSLITNKCATEYSDKKDDEANHDEVMAVAKNRQKACCELVSRLIREIHL
ASA*

GH04180.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PB 353 CG16758-PB 1..353 1..353 1866 100 Plus
CG16758-PH 396 CG16758-PH 1..396 1..353 1812 89.1 Plus
CG16758-PD 329 CG16758-PD 1..329 1..353 1706 93.2 Plus
CG16758-PG 372 CG16758-PG 1..372 1..353 1702 89 Plus
CG16758-PE 321 CG16758-PE 37..321 69..353 1494 100 Plus