BDGP Sequence Production Resources |
Search the DGRC for GH04183
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 41 |
Well: | 83 |
Vector: | pOT2 |
Associated Gene/Transcript | RpL28-RA |
Protein status: | GH04183.pep: gold |
Preliminary Size: | 1664 |
Sequenced Size: | 1586 |
Gene | Date | Evidence |
---|---|---|
CG17046 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12740 | 2002-05-01 | Blastp of sequenced clone |
RpL28 | 2008-04-29 | Release 5.5 accounting |
RpL28 | 2008-08-15 | Release 5.9 accounting |
CG17180 | 2008-08-15 | Release 5.9 accounting |
CG17180 | 2008-12-18 | 5.12 accounting |
RpL28 | 2008-12-18 | 5.12 accounting |
1586 bp (1586 high quality bases) assembled on 2002-05-01
GenBank Submission: AY102656
> GH04183.complete CACTGATTATATGTATTTACGGAATGACTAGAAAGACAAGATCTCTTTGA TTGGTTGATCACAGGATAGCGTAGCCCTATTTTACATGGTGCTGTCCAAC ATGTCCACCAGCCGCTTGATCTGCCTTATGCGCTGACCCAGCTGCTCTGT GGGTTTCATCGACTTGGTGATTTCCTCCGCCTTGGCCAGCAATTGGTACT GGCACTTGATATTCGCGTCCAAAGTGTCCGTCAGCTTGTTGACCGCGTTG CGATGGACCTCCACGTTGTCGGCCGTTATGGAGGAGATTGAGTGCAGCAG GTTGCCCAGGTTTTCCATCAGATTGTCCACCGAGCTGGCCAAGTACTGAG CCTCCAGTTCGATGTCGCTCAAGACGCTGCCGTCCACTTCGGGAATGTTG CGCGACTGCAGGAACCGCCGCGTGAGCAGACCGTTGCCGGAAGTGGCTCC AATGGGACCCATGGAGCTCAGGGGCGTGGTGTGCTCCGAGGAGTAGGCCG AAGCCGCCACGCGCTCGCGCAACTTGGCCTCTAGATCGTGGGCCACAAAG TGGCGCATCCCGTCGGAGTCACTGGTTTCGCCGTCCAGCTCGTAGGGCAC AGTGCTCTCTGCCTTCAGTCTGTGCCTTTCGATGTCGCCGGAACTGCCCT TAGAGTTGCTATTCGAGTTGCTGTTGTCCTCCTCCTCCAAGGGATCGTCT TCCTCGTCGGGATCCTCGCCCGAATCCAGGTTAAGGTATTTCTCGCCGTT GGGTCTTGTCTTTGTGCTTCCGGGAATCGCAGCATGGCCAGTGGCTGTGG GCGTCAGATCCTGGAGCACGTGCTCTGGCACCGCTCCCGGATACTGAGCC AGGAACGGAATTTCCGTGTAGGAGGAGGCGGGCGTGGCTCCGGATCCAGA ACTCCTGGCTGCCCCTTCCGATGGGCCACTCTCCTCGGCCACATAACCGT AACGTGGGCGGATGGGAATGTCCTGGTGGCGGTGCGACATTCTGCACTGC TCTTTTCAATCCAAGGAACTTTAGGCAGACTAAGAAATGTATGTCAATTT TCTCGTGAGATGGCAACCTCTTCGCACCTCAATTGGTTGATCATTCGCAA CAACAACGCCTTCTTGTTGAAGAAGCGCGATGTGAAGAAGCCCTTCAGCA CAGAGCCAAACAACTTGGCCAGCGTGAGCTCGTACCGCTACAGCGGCATC GTGCACAAGAAGACCCTGGGAGTCGTGCCAGCTGCCGACAAGAAGGGCTT CACCGCCGTGCTGAAGAAGGGCAAGTATGCCCAGCGCCCCGCCAAGAACA CCGTGCGTGTTGACTTCAAGGCCGGTCCCCGCCGTTCCCTGAAGAAGCTG AAGAACCTGCTTATCGGCTCCAAGTACCGCAAGGACCTGACACAGGCTGC CCTCCGCCGCGCTTCCGCTGTCCTGCGCTCCCAGAAGCCCGCCCCCGTCA AGGGAAAGAAGGCCGAGTTTGCTAAGGGAAAGAAGCCCGAATAAACTGTA CCAGATTGGGGCTATGCGGAGCTGTTTTCTACTCGAGAATAAAGAAAAAA TATTAAAAACACCGTAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17180-RA | 1123 | CG17180-RA | 90..1119 | 1030..1 | 5150 | 100 | Minus |
RpL28-RF | 827 | RpL28-RF | 113..626 | 1054..1567 | 2570 | 100 | Plus |
RpL28-RC | 1156 | RpL28-RC | 173..515 | 1054..1396 | 1715 | 100 | Plus |
RpL28-RC | 1156 | RpL28-RC | 696..869 | 1394..1567 | 870 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 541341..541815 | 602..128 | 2375 | 100 | Minus |
chr3L | 24539361 | chr3L | 540834..541284 | 1053..603 | 2210 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 3220870..3221113 | 1396..1153 | 1220 | 100 | Minus |
chr3L | 24539361 | chr3L | 3220518..3220689 | 1565..1394 | 830 | 98.8 | Minus |
chr3L | 24539361 | chr3L | 541868..541999 | 132..1 | 645 | 99.2 | Minus |
chr3L | 24539361 | chr3L | 3221285..3221384 | 1153..1054 | 500 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 541485..541959 | 602..128 | 2375 | 100 | Minus |
3L | 28110227 | 3L | 540978..541428 | 1053..603 | 2255 | 100 | Minus |
3L | 28110227 | 3L | 3221466..3221709 | 1396..1153 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 3221112..3221285 | 1567..1394 | 870 | 100 | Minus |
3L | 28110227 | 3L | 542012..542143 | 132..1 | 645 | 99.2 | Minus |
3L | 28110227 | 3L | 3221881..3221980 | 1153..1054 | 500 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 541485..541959 | 602..128 | 2375 | 100 | Minus |
3L | 28103327 | 3L | 540978..541428 | 1053..603 | 2255 | 100 | Minus |
3L | 28103327 | 3L | 3221466..3221709 | 1396..1153 | 1220 | 100 | Minus |
3L | 28103327 | 3L | 3221112..3221285 | 1567..1394 | 870 | 100 | Minus |
3L | 28103327 | 3L | 542012..542143 | 132..1 | 645 | 99.2 | Minus |
3L | 28103327 | 3L | 3221881..3221980 | 1153..1054 | 500 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 540829..541284 | 603..1062 | 98 | -> | Minus |
chr3L | 541341..541815 | 128..602 | 100 | -> | Minus |
chr3L | 541873..541999 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RD | 1..435 | 1060..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RD | 1..435 | 1060..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RE | 1..435 | 1060..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RD | 1..435 | 1060..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RE | 1..435 | 1060..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17180-RA | 85..1119 | 1..1039 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17180-RA | 85..1119 | 1..1039 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17180-RB | 36..1093 | 1..1062 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17180-RA | 85..1119 | 1..1039 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17180-RB | 36..1093 | 1..1062 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 542017..542143 | 1..127 | 100 | Minus | |
3L | 540973..541428 | 603..1062 | 99 | -> | Minus |
3L | 541485..541959 | 128..602 | 100 | -> | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 542017..542143 | 1..127 | 100 | Minus | |
3L | 540973..541428 | 603..1062 | 99 | -> | Minus |
3L | 541485..541959 | 128..602 | 100 | -> | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 542017..542143 | 1..127 | 100 | Minus | |
3L | 540973..541428 | 603..1062 | 99 | -> | Minus |
3L | 541485..541959 | 128..602 | 100 | -> | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 540973..541428 | 603..1062 | 99 | -> | Minus |
arm_3L | 541485..541959 | 128..602 | 100 | -> | Minus |
arm_3L | 542017..542143 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 540973..541428 | 603..1062 | 99 | -> | Minus |
3L | 541485..541959 | 128..602 | 100 | -> | Minus |
3L | 542017..542143 | 1..127 | 100 | Minus |
Translation from 783 to 1493
> GH04183.pep MASGCGRQILEHVLWHRSRILSQERNFRVGGGGRGSGSRTPGCPFRWATL LGHITVTWADGNVLVAVRHSALLFSIQGTLGRLRNVCQFSREMATSSHLN WLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPA ADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRK DLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24379-PA | 144 | GF24379-PA | 1..144 | 93..236 | 719 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14270-PA | 144 | GG14270-PA | 1..144 | 93..236 | 729 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15706-PA | 144 | GH15706-PA | 1..144 | 93..236 | 621 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL28-PG | 144 | CG12740-PG | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PF | 144 | CG12740-PF | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PE | 144 | CG12740-PE | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PD | 144 | CG12740-PD | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PA | 144 | CG12740-PA | 1..144 | 93..236 | 726 | 100 | Plus |
RpL28-PB | 144 | CG12740-PB | 1..144 | 93..236 | 726 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12761-PA | 144 | GI12761-PA | 1..144 | 93..236 | 656 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21281-PA | 144 | GL21281-PA | 1..144 | 93..236 | 706 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11782-PA | 144 | GA11782-PA | 1..144 | 93..236 | 706 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14063-PA | 144 | GM14063-PA | 1..144 | 93..236 | 734 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13338-PA | 144 | GD13338-PA | 1..144 | 93..236 | 728 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15527-PA | 144 | GJ15527-PA | 1..144 | 93..236 | 645 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16691-PA | 134 | GK16691-PA | 1..132 | 93..224 | 646 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20698-PA | 144 | GE20698-PA | 1..144 | 93..236 | 729 | 99.3 | Plus |
Translation from 783 to 1060
> GH04183.hyp MASGCGRQILEHVLWHRSRILSQERNFRVGGGGRGSGSRTPGCPFRWATL LGHITVTWADGNVLVAVRHSALLFSIQGTLGRLRNVCQFSE