Clone GH04183 Report

Search the DGRC for GH04183

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:83
Vector:pOT2
Associated Gene/TranscriptRpL28-RA
Protein status:GH04183.pep: gold
Preliminary Size:1664
Sequenced Size:1586

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17046 2002-01-01 Sim4 clustering to Release 2
CG12740 2002-05-01 Blastp of sequenced clone
RpL28 2008-04-29 Release 5.5 accounting
RpL28 2008-08-15 Release 5.9 accounting
CG17180 2008-08-15 Release 5.9 accounting
CG17180 2008-12-18 5.12 accounting
RpL28 2008-12-18 5.12 accounting

Clone Sequence Records

GH04183.complete Sequence

1586 bp (1586 high quality bases) assembled on 2002-05-01

GenBank Submission: AY102656

> GH04183.complete
CACTGATTATATGTATTTACGGAATGACTAGAAAGACAAGATCTCTTTGA
TTGGTTGATCACAGGATAGCGTAGCCCTATTTTACATGGTGCTGTCCAAC
ATGTCCACCAGCCGCTTGATCTGCCTTATGCGCTGACCCAGCTGCTCTGT
GGGTTTCATCGACTTGGTGATTTCCTCCGCCTTGGCCAGCAATTGGTACT
GGCACTTGATATTCGCGTCCAAAGTGTCCGTCAGCTTGTTGACCGCGTTG
CGATGGACCTCCACGTTGTCGGCCGTTATGGAGGAGATTGAGTGCAGCAG
GTTGCCCAGGTTTTCCATCAGATTGTCCACCGAGCTGGCCAAGTACTGAG
CCTCCAGTTCGATGTCGCTCAAGACGCTGCCGTCCACTTCGGGAATGTTG
CGCGACTGCAGGAACCGCCGCGTGAGCAGACCGTTGCCGGAAGTGGCTCC
AATGGGACCCATGGAGCTCAGGGGCGTGGTGTGCTCCGAGGAGTAGGCCG
AAGCCGCCACGCGCTCGCGCAACTTGGCCTCTAGATCGTGGGCCACAAAG
TGGCGCATCCCGTCGGAGTCACTGGTTTCGCCGTCCAGCTCGTAGGGCAC
AGTGCTCTCTGCCTTCAGTCTGTGCCTTTCGATGTCGCCGGAACTGCCCT
TAGAGTTGCTATTCGAGTTGCTGTTGTCCTCCTCCTCCAAGGGATCGTCT
TCCTCGTCGGGATCCTCGCCCGAATCCAGGTTAAGGTATTTCTCGCCGTT
GGGTCTTGTCTTTGTGCTTCCGGGAATCGCAGCATGGCCAGTGGCTGTGG
GCGTCAGATCCTGGAGCACGTGCTCTGGCACCGCTCCCGGATACTGAGCC
AGGAACGGAATTTCCGTGTAGGAGGAGGCGGGCGTGGCTCCGGATCCAGA
ACTCCTGGCTGCCCCTTCCGATGGGCCACTCTCCTCGGCCACATAACCGT
AACGTGGGCGGATGGGAATGTCCTGGTGGCGGTGCGACATTCTGCACTGC
TCTTTTCAATCCAAGGAACTTTAGGCAGACTAAGAAATGTATGTCAATTT
TCTCGTGAGATGGCAACCTCTTCGCACCTCAATTGGTTGATCATTCGCAA
CAACAACGCCTTCTTGTTGAAGAAGCGCGATGTGAAGAAGCCCTTCAGCA
CAGAGCCAAACAACTTGGCCAGCGTGAGCTCGTACCGCTACAGCGGCATC
GTGCACAAGAAGACCCTGGGAGTCGTGCCAGCTGCCGACAAGAAGGGCTT
CACCGCCGTGCTGAAGAAGGGCAAGTATGCCCAGCGCCCCGCCAAGAACA
CCGTGCGTGTTGACTTCAAGGCCGGTCCCCGCCGTTCCCTGAAGAAGCTG
AAGAACCTGCTTATCGGCTCCAAGTACCGCAAGGACCTGACACAGGCTGC
CCTCCGCCGCGCTTCCGCTGTCCTGCGCTCCCAGAAGCCCGCCCCCGTCA
AGGGAAAGAAGGCCGAGTTTGCTAAGGGAAAGAAGCCCGAATAAACTGTA
CCAGATTGGGGCTATGCGGAGCTGTTTTCTACTCGAGAATAAAGAAAAAA
TATTAAAAACACCGTAAAAAAAAAAAAAAAAAAAAA

GH04183.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17180-RA 1123 CG17180-RA 90..1119 1030..1 5150 100 Minus
RpL28-RF 827 RpL28-RF 113..626 1054..1567 2570 100 Plus
RpL28-RC 1156 RpL28-RC 173..515 1054..1396 1715 100 Plus
RpL28-RC 1156 RpL28-RC 696..869 1394..1567 870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 541341..541815 602..128 2375 100 Minus
chr3L 24539361 chr3L 540834..541284 1053..603 2210 99.3 Minus
chr3L 24539361 chr3L 3220870..3221113 1396..1153 1220 100 Minus
chr3L 24539361 chr3L 3220518..3220689 1565..1394 830 98.8 Minus
chr3L 24539361 chr3L 541868..541999 132..1 645 99.2 Minus
chr3L 24539361 chr3L 3221285..3221384 1153..1054 500 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 541485..541959 602..128 2375 100 Minus
3L 28110227 3L 540978..541428 1053..603 2255 100 Minus
3L 28110227 3L 3221466..3221709 1396..1153 1220 100 Minus
3L 28110227 3L 3221112..3221285 1567..1394 870 100 Minus
3L 28110227 3L 542012..542143 132..1 645 99.2 Minus
3L 28110227 3L 3221881..3221980 1153..1054 500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 541485..541959 602..128 2375 100 Minus
3L 28103327 3L 540978..541428 1053..603 2255 100 Minus
3L 28103327 3L 3221466..3221709 1396..1153 1220 100 Minus
3L 28103327 3L 3221112..3221285 1567..1394 870 100 Minus
3L 28103327 3L 542012..542143 132..1 645 99.2 Minus
3L 28103327 3L 3221881..3221980 1153..1054 500 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:11:32 has no hits.

GH04183.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:12:28 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 540829..541284 603..1062 98 -> Minus
chr3L 541341..541815 128..602 100 -> Minus
chr3L 541873..541999 1..127 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:13:17 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 1..435 1060..1494 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:51 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 1..435 1060..1494 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:20 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 1..435 1060..1494 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:22 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RD 1..435 1060..1494 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:21:51 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 1..435 1060..1494 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:24 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
CG17180-RA 85..1119 1..1039 99   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:51 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
CG17180-RA 85..1119 1..1039 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:20 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
CG17180-RB 36..1093 1..1062 99   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:22 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
CG17180-RA 85..1119 1..1039 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:21:51 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
CG17180-RB 36..1093 1..1062 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:28 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 542017..542143 1..127 100   Minus
3L 540973..541428 603..1062 99 -> Minus
3L 541485..541959 128..602 100 -> Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:28 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 542017..542143 1..127 100   Minus
3L 540973..541428 603..1062 99 -> Minus
3L 541485..541959 128..602 100 -> Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:28 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 542017..542143 1..127 100   Minus
3L 540973..541428 603..1062 99 -> Minus
3L 541485..541959 128..602 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:20 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 540973..541428 603..1062 99 -> Minus
arm_3L 541485..541959 128..602 100 -> Minus
arm_3L 542017..542143 1..127 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:55 Download gff for GH04183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 540973..541428 603..1062 99 -> Minus
3L 541485..541959 128..602 100 -> Minus
3L 542017..542143 1..127 100   Minus

GH04183.pep Sequence

Translation from 783 to 1493

> GH04183.pep
MASGCGRQILEHVLWHRSRILSQERNFRVGGGGRGSGSRTPGCPFRWATL
LGHITVTWADGNVLVAVRHSALLFSIQGTLGRLRNVCQFSREMATSSHLN
WLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPA
ADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRK
DLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPE*

GH04183.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24379-PA 144 GF24379-PA 1..144 93..236 719 97.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14270-PA 144 GG14270-PA 1..144 93..236 729 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15706-PA 144 GH15706-PA 1..144 93..236 621 83.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-PG 144 CG12740-PG 1..144 93..236 726 100 Plus
RpL28-PF 144 CG12740-PF 1..144 93..236 726 100 Plus
RpL28-PE 144 CG12740-PE 1..144 93..236 726 100 Plus
RpL28-PD 144 CG12740-PD 1..144 93..236 726 100 Plus
RpL28-PA 144 CG12740-PA 1..144 93..236 726 100 Plus
RpL28-PB 144 CG12740-PB 1..144 93..236 726 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12761-PA 144 GI12761-PA 1..144 93..236 656 89.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21281-PA 144 GL21281-PA 1..144 93..236 706 95.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11782-PA 144 GA11782-PA 1..144 93..236 706 95.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14063-PA 144 GM14063-PA 1..144 93..236 734 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13338-PA 144 GD13338-PA 1..144 93..236 728 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15527-PA 144 GJ15527-PA 1..144 93..236 645 88.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16691-PA 134 GK16691-PA 1..132 93..224 646 94.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20698-PA 144 GE20698-PA 1..144 93..236 729 99.3 Plus

GH04183.hyp Sequence

Translation from 783 to 1060

> GH04183.hyp
MASGCGRQILEHVLWHRSRILSQERNFRVGGGGRGSGSRTPGCPFRWATL
LGHITVTWADGNVLVAVRHSALLFSIQGTLGRLRNVCQFSE
Sequence GH04183.hyp has no blast hits.