Clone GH04236 Report

Search the DGRC for GH04236

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:42
Well:36
Vector:pOT2
Associated Gene/TranscriptCG7971-RB
Protein status:GH04236.pep: gold
Preliminary Size:1391
Sequenced Size:1209

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7971 2001-01-01 Release 2 assignment
CG7971 2002-12-11 Blastp of sequenced clone
CG7971 2008-04-29 Release 5.5 accounting
CG7971 2008-08-15 Release 5.9 accounting
CG7971 2008-12-18 5.12 accounting

Clone Sequence Records

GH04236.complete Sequence

1209 bp (1209 high quality bases) assembled on 2002-12-11

GenBank Submission: BT003620

> GH04236.complete
ATTATTTTGAGTGAAAGACATCCGCATGTCCGGGCAAGCGGACTGAAATC
TAAGCACTCCTTAGCTAATTTAACAATCTAGATAGGTGAAACATCATCCA
TATTTAAGCCTTTTTTGAGCTAATCAAGCTAGTCTTAAAGACGCACCCCG
GAGGAAATTAAGTCGCAGGTGGACTCCTTCCGCCAGAAGTTGATGGGACA
GGGCAAAACAGATCTGGCCAAAGATGAATTCGGACGCGTAGCTGCTCGCG
ACACCCATCAAATAGCCGAGGCTCAACAGCAGAAGAACGCCAGGCTGCGC
GAGGCCTTCAACATATCCGAGTACTTTGTCGAGGGCAGCAGCTTCGACGG
TGATCGCAAGGCGAAGGAGGACCTGGCCAAAAGCGTGGCTCTCCAAAAGG
AACTGGACGCCCAGCGCGAGAGCCTGGCAGCGGCGGCAGCTGCCGCAGCA
GCCGGCAAGGACAAGGAGACCGGGAAGCGGTATGCCCTAGTGCGTACTCC
TTCCCGCGAACGGGATCGCGATGCTGGCGATGCGGCAGCCAATGGCGACG
AACGCGATCATGTCTCCAAGACGGACAAGAAGAAGCGCAAGAAGCGCGCC
AGAGAGAGTTCGGCCAGTCCTGAGCGCAAGAAGAAGAAGAAGTCGAAGAA
GCACAAGAAAGAGAGGTAAGAGTCCTGGCCGGAATCCGAAACTTGAAACC
CTCGACAATCGTAGCTTTGTGTTTGTTTCCTTTGCTCTTTCTTTGGACTC
TACAGTCATGACTTTTGATTTGTTCCTTATCGTACATAGTAAACTGTAAA
CACGTGCGCTTAGAGCGTGAAAACCAATGATACTATGTAACTATCAATCA
ACTGCTTAATACATTTTGTTTTTCGTCTCTACTCCTTCTTTTACATTGCA
TTTGAAACCACAAAAGGGACTCATATGAGAAAGAAAGTAAAAAGAAGCGA
AAAGCCACGTACAAATGACTCACACTTAGTTTTAACAAAGCTAACACTAT
TCAACAAGCTATAAGAACCAATCCAATCAAGTGAAATGTTTCAAATGCCT
TTCTGCAATATATACTTTCGATATCCTAACACTTGCCAAGACAATCTTTT
ATTTGAATCCGTGTGCAGCGAGAGTGAGTAGAGTGATCAGGGATCTAAGT
ACGTATGGGTTCTCCACTAGCCAACAACAGCGACAGCAACCACAAAAAAA
AAAAAAAAA

GH04236.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7971-RB 1181 CG7971-RB 1..1173 4..1176 5865 100 Plus
CG7971.a 2566 CG7971.a 1..665 1..665 3325 100 Plus
CG7971-RD 2883 CG7971-RD 456..981 140..665 2630 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1660174..1660743 1176..607 2850 100 Minus
chr3L 24539361 chr3L 1660803..1661168 608..243 1815 99.7 Minus
chr3L 24539361 chr3L 1663643..1663782 140..1 670 98.6 Minus
chr3L 24539361 chr3L 1663473..1663580 242..135 510 98.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1660598..1661167 1176..607 2850 100 Minus
3L 28110227 3L 1661227..1661592 608..243 1830 100 Minus
3L 28110227 3L 1664090..1664229 140..1 700 100 Minus
3L 28110227 3L 1663920..1664027 242..135 525 99.1 Minus
2L 23513712 2L 14358321..14358360 1169..1208 200 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1660598..1661167 1176..607 2850 100 Minus
3L 28103327 3L 1661227..1661592 608..243 1830 100 Minus
3L 28103327 3L 1664090..1664229 140..1 700 100 Minus
3L 28103327 3L 1663920..1664027 242..135 525 99 Minus
2L 23513712 2L 14358321..14358360 1169..1208 200 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:43:26 has no hits.

GH04236.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:44:44 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1660174..1660741 609..1176 92 <- Minus
chr3L 1660803..1661168 243..608 99 <- Minus
chr3L 1663473..1663574 141..242 99 <- Minus
chr3L 1663643..1663782 1..140 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:13:29 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RC 239..770 140..674 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:33 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RC 239..770 140..674 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:37:13 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RC 239..770 140..674 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:51:05 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RC 239..770 140..674 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:13:23 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RC 239..770 140..674 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:51 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RB 1..1173 4..1176 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:33 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RB 1..1173 4..1176 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:37:13 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RB 13..1187 1..1175 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:51:05 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RB 1..1173 4..1176 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:13:23 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
CG7971-RB 13..1187 1..1175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:44 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1660598..1661165 609..1176 100 <- Minus
3L 1661227..1661592 243..608 100 <- Minus
3L 1663920..1664021 141..242 100 <- Minus
3L 1664090..1664229 1..140 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:44 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1660598..1661165 609..1176 100 <- Minus
3L 1661227..1661592 243..608 100 <- Minus
3L 1663920..1664021 141..242 100 <- Minus
3L 1664090..1664229 1..140 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:44 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1660598..1661165 609..1176 100 <- Minus
3L 1661227..1661592 243..608 100 <- Minus
3L 1663920..1664021 141..242 100 <- Minus
3L 1664090..1664229 1..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:37:13 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1660598..1661165 609..1176 100 <- Minus
arm_3L 1661227..1661592 243..608 100 <- Minus
arm_3L 1663920..1664021 141..242 100 <- Minus
arm_3L 1664090..1664229 1..140 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:54 Download gff for GH04236.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1664090..1664229 1..140 100   Minus
3L 1660598..1661165 609..1176 100 <- Minus
3L 1661227..1661592 243..608 100 <- Minus
3L 1663920..1664021 141..242 100 <- Minus

GH04236.pep Sequence

Translation from 192 to 668

> GH04236.pep
MGQGKTDLAKDEFGRVAARDTHQIAEAQQQKNARLREAFNISEYFVEGSS
FDGDRKAKEDLAKSVALQKELDAQRESLAAAAAAAAAGKDKETGKRYALV
RTPSRERDRDAGDAAANGDERDHVSKTDKKKRKKRARESSASPERKKKKK
SKKHKKER*

GH04236.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24975-PA 1051 GF24975-PA 98..241 1..144 516 88.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14576-PA 1051 GG14576-PA 98..237 1..143 623 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15516-PA 1158 GH15516-PA 98..245 1..144 563 89.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7971-PB 158 CG7971-PB 1..158 1..158 785 100 Plus
CG7971-PH 174 CG7971-PH 1..158 1..158 785 100 Plus
CG7971-PG 1062 CG7971-PG 98..254 1..157 780 100 Plus
CG7971-PA 1062 CG7971-PA 98..254 1..157 780 100 Plus
CG7971-PC 1107 CG7971-PC 98..254 1..157 780 100 Plus
CG7971-PF 1655 CG7971-PF 339..479 17..157 694 99.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16794-PA 1128 GI16794-PA 98..252 1..144 575 83.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23474-PA 1099 GA23474-PA 98..244 1..143 523 88.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14188-PA 725 GM14188-PA 98..254 1..157 791 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13454-PA 1066 GD13454-PA 98..254 1..157 798 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12538-PA 1083 GJ12538-PA 98..243 1..144 496 82.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17071-PA 1358 GK17071-PA 370..519 1..143 395 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20934-PA 1080 GE20934-PA 98..241 1..143 631 96.5 Plus

GH04236.hyp Sequence

Translation from 192 to 668

> GH04236.hyp
MGQGKTDLAKDEFGRVAARDTHQIAEAQQQKNARLREAFNISEYFVEGSS
FDGDRKAKEDLAKSVALQKELDAQRESLAAAAAAAAAGKDKETGKRYALV
RTPSRERDRDAGDAAANGDERDHVSKTDKKKRKKRARESSASPERKKKKK
SKKHKKER*

GH04236.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7971-PB 158 CG7971-PB 1..158 1..158 785 100 Plus
CG7971-PH 174 CG7971-PH 1..158 1..158 785 100 Plus
CG7971-PG 1062 CG7971-PG 98..254 1..157 780 100 Plus
CG7971-PA 1062 CG7971-PA 98..254 1..157 780 100 Plus
CG7971-PC 1107 CG7971-PC 98..254 1..157 780 100 Plus