Clone GH04269 Report

Search the DGRC for GH04269

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:42
Well:69
Vector:pOT2
Associated Gene/TranscriptCG3253-RA
Protein status:GH04269.pep: gold
Preliminary Size:1590
Sequenced Size:1462

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3253 2001-01-01 Release 2 assignment
CG3253 2001-07-04 Blastp of sequenced clone
CG3253 2003-01-01 Sim4 clustering to Release 3
CG3253 2008-04-29 Release 5.5 accounting
CG3253 2008-08-15 Release 5.9 accounting
CG3253 2008-12-18 5.12 accounting

Clone Sequence Records

GH04269.complete Sequence

1462 bp (1462 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047534

> GH04269.complete
TTATTAAGGTTGTGTTTTCCTGATAAATAACTGCATTGTGATACTCGATT
GCTCGAATGATGTGCCACATATCAAACTGGAGTTCCCTGAAAATAGTGCT
GGCCTTTCTCTCGGTCAACATCTTCTGGCTCCTGAAGGTGTATCCCCCGG
CAGGAGATGGTGCGCAGAGGTGTCCGCCCACTCCCCAAAGTCCCGTGGCC
GTAGAGTGTCCCTAGCATTCGGATATCGCCTATGCGCTGCTCCAGCCGCT
TAACAACATGGACGGCTTCGTGGTCCCGAACAACTCCGCGTCTCTGGCCT
TCGATAACATCAACTTGAGCTACGGCCGCTGGGACAACCAGCTGCTGTAC
AGGATCAAAGACTTTGCTCTGCTAGGCGAGCAGTACGTAGACTCCTCGGA
GGGCAGCTTGGTGTGCCTGGCCACCCAGACTTCAGTGGAGCGCCTCAACT
CGCTTCCCCAGGTGGCAGCCAATTGGCAGGGCAAGATGTCCGTGGCCCTG
TTTGCAGCTGGGCCCGAGGAGTTTGTAGTCCTGCAATACTTCGTTACCTA
TATGCGCCTGTGCTTCGCAAACATACGCGAGAATGCCACCTTTCACTTGC
TCACACCGAGGGACTTCGACAAGCTGCCCCGAGTAGCCGCACTTCCCCTT
AACATGAGGGGCAAATTCGACTGCCAGTACCCGGATAGGACGCTCAAGGC
CCTGCTCAAGTTCCGCTCCCTGAAGACCCTGCAGTGGCGACAGAGGAACA
CCTATCCGCAGAACCACATGAGGAACCTGGCACGCAAGGGGTGCCAGACG
AAGTACGTCTTTCTCACCGACATCGACATTGTTCCCAGCACCAACAGTGT
GCCCCAGCTGAACCACTTCTTCAGGACAGCCAATTGCACGAAGAGTTGTG
CCTACGTAATCCCCACATTTGAAATAGACGTTAGGGCTACGTTTCCCCGC
TCCAAGAATGCGTTAGTGCGCCTGATAAGGAAAGGACTAGCTAGGCCTTT
TCACGAAAAGGTCTTCATCTATAACCAATATGCCACTAATTTCTCCAAGT
GGCTGTCCCCCAACACAAATGAAACGGAAGTATCCGTCAGCCATGTTGTA
ACGAACTTTGAATTCCTGTATGAACCATTCTACATAGCAGTGGACAACGC
ACCAGCGCACGACGAACGATTTCTGGGTTATGGGTTCACCAGGAACTCCC
AGGTTTATGAGATGCACATTGCTGGCTATCAGTTCTACGTCCTTTCCCCT
GTGTTTACCGGTCATTGGGGATTGCAGAGGAAGCAGGCCAGACCCGCTTG
GCGGGAGCAACAGAATAATGCGAATCGCCGGAAGTTCGACGTTTTCAAAA
GCGAAATATTCGTGCGGTACAAAAACGATCCACGCCTGCTGTTAAAGGCC
AAAAAGAATCAAATCCTAGTAAAATAAATAAAATAGTTAAAATTAAAAAA
AAAAAAAAAAAA

GH04269.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-RA 1963 CG3253-RA 345..1789 1..1445 7225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20000848..20001836 62..1050 4810 99.1 Plus
chr2R 21145070 chr2R 20002103..20002347 1200..1444 1225 100 Plus
chr2R 21145070 chr2R 20001896..20002051 1049..1204 780 100 Plus
chr2R 21145070 chr2R 20000730..20000791 1..62 295 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24114860..24115848 62..1050 4945 100 Plus
2R 25286936 2R 24116115..24116360 1200..1445 1230 100 Plus
2R 25286936 2R 24115908..24116063 1049..1204 780 100 Plus
2R 25286936 2R 24114742..24114803 1..62 310 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24116059..24117047 62..1050 4945 100 Plus
2R 25260384 2R 24117314..24117559 1200..1445 1230 100 Plus
2R 25260384 2R 24117107..24117262 1049..1204 780 100 Plus
2R 25260384 2R 24115941..24116002 1..62 310 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:36:00 has no hits.

GH04269.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:36:57 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20000730..20000791 1..62 98 -> Plus
chr2R 20000849..20001834 63..1048 99 -> Plus
chr2R 20001896..20002049 1049..1202 100 -> Plus
chr2R 20002106..20002347 1203..1444 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:13:41 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 1..1170 258..1427 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:52 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 1..1170 258..1427 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:46:43 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 1..1170 258..1427 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:18 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 1..1170 258..1427 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:05:20 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 1..1170 258..1427 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:28 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 76..1519 1..1444 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:52 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 76..1519 1..1444 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:46:43 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 90..1533 1..1444 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:18 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 76..1519 1..1444 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:05:20 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 90..1533 1..1444 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:57 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24114742..24114803 1..62 100 -> Plus
2R 24114861..24115846 63..1048 100 -> Plus
2R 24115908..24116061 1049..1202 100 -> Plus
2R 24116118..24116359 1203..1444 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:57 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24114742..24114803 1..62 100 -> Plus
2R 24114861..24115846 63..1048 100 -> Plus
2R 24115908..24116061 1049..1202 100 -> Plus
2R 24116118..24116359 1203..1444 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:57 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24114742..24114803 1..62 100 -> Plus
2R 24114861..24115846 63..1048 100 -> Plus
2R 24115908..24116061 1049..1202 100 -> Plus
2R 24116118..24116359 1203..1444 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:46:43 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20003431..20003584 1049..1202 100 -> Plus
arm_2R 20003641..20003882 1203..1444 100   Plus
arm_2R 20002265..20002326 1..62 100 -> Plus
arm_2R 20002384..20003369 63..1048 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:21 Download gff for GH04269.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24116078..24117063 63..1048 100 -> Plus
2R 24117125..24117278 1049..1202 100 -> Plus
2R 24117335..24117576 1203..1444 100   Plus
2R 24115959..24116020 1..62 100 -> Plus

GH04269.pep Sequence

Translation from 257 to 1426

> GH04269.pep
MDGFVVPNNSASLAFDNINLSYGRWDNQLLYRIKDFALLGEQYVDSSEGS
LVCLATQTSVERLNSLPQVAANWQGKMSVALFAAGPEEFVVLQYFVTYMR
LCFANIRENATFHLLTPRDFDKLPRVAALPLNMRGKFDCQYPDRTLKALL
KFRSLKTLQWRQRNTYPQNHMRNLARKGCQTKYVFLTDIDIVPSTNSVPQ
LNHFFRTANCTKSCAYVIPTFEIDVRATFPRSKNALVRLIRKGLARPFHE
KVFIYNQYATNFSKWLSPNTNETEVSVSHVVTNFEFLYEPFYIAVDNAPA
HDERFLGYGFTRNSQVYEMHIAGYQFYVLSPVFTGHWGLQRKQARPAWRE
QQNNANRRKFDVFKSEIFVRYKNDPRLLLKAKKNQILVK*

GH04269.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11373-PA 377 GF11373-PA 1..377 13..389 1889 90.2 Plus
Dana\GF15654-PA 411 GF15654-PA 19..385 10..352 256 25 Plus
Dana\GF14302-PA 574 GF14302-PA 187..556 2..389 235 24.1 Plus
Dana\GF14309-PA 398 GF14309-PA 103..388 38..309 176 25.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22943-PA 389 GG22943-PA 1..389 1..389 2047 96.9 Plus
Dere\GG10238-PA 407 GG10238-PA 45..391 27..367 257 25.1 Plus
Dere\GG24282-PA 548 GG24282-PA 162..530 3..389 224 24.4 Plus
Dere\GG24286-PA 470 GG24286-PA 117..441 38..351 217 26.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20168-PA 208 GH20168-PA 1..207 171..377 940 82.1 Plus
Dgri\GH10688-PA 542 GH10688-PA 182..524 27..389 234 24.5 Plus
Dgri\GH10695-PA 449 GH10695-PA 93..441 38..371 196 23.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-PB 389 CG3253-PB 1..389 1..389 2061 100 Plus
CG3253-PA 389 CG3253-PA 1..389 1..389 2061 100 Plus
CG15483-PA 407 CG15483-PA 50..363 34..336 254 25.9 Plus
CG11149-PE 475 CG11149-PE 143..430 64..336 207 27.1 Plus
CG11149-PD 475 CG11149-PD 143..430 64..336 207 27.1 Plus
CG11149-PC 475 CG11149-PC 143..430 64..336 207 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18863-PA 385 GI18863-PA 6..385 1..380 1561 72.4 Plus
Dmoj\GI11204-PA 532 GI11204-PA 172..514 27..389 232 24.2 Plus
Dmoj\GI11232-PA 458 GI11232-PA 128..454 64..385 219 26.4 Plus
Dmoj\GI21341-PA 390 GI21341-PA 47..358 43..347 191 24.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11668-PA 312 GL11668-PA 6..189 1..184 775 80.4 Plus
Dper\GL11668-PA 312 GL11668-PA 186..312 263..389 643 89.8 Plus
Dper\GL26639-PA 471 GL26639-PA 127..467 52..384 225 27.8 Plus
Dper\GL19727-PA 637 GL19727-PA 283..620 41..372 211 22.4 Plus
Dper\GL19115-PA 240 GL19115-PA 70..222 212..389 145 27.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16964-PA 506 GA16964-PA 6..375 1..370 1706 85.4 Plus
Dpse\GA21591-PA 561 GA21591-PA 174..543 2..389 238 24.6 Plus
Dpse\GA10796-PA 471 GA10796-PA 127..467 52..384 229 28.4 Plus
Dpse\GA13763-PA 411 GA13763-PA 57..394 41..372 207 22 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18308-PA 408 GM18308-PA 53..408 1..389 1826 89.2 Plus
Dsec\GM25976-PA 407 GM25976-PA 50..390 34..358 240 24.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15463-PA 389 GD15463-PA 1..389 1..389 2064 97.7 Plus
Dsim\GD22631-PA 544 GD22631-PA 158..526 3..389 227 24.6 Plus
Dsim\GD22096-PA 335 GD22096-PA 46..327 34..305 217 25.3 Plus
Dsim\GD14937-PA 335 GD14937-PA 5..322 66..376 204 26.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20432-PA 208 GJ20432-PA 1..207 171..377 928 80.2 Plus
Dvir\GJ18327-PA 547 GJ18327-PA 187..529 27..389 233 24.5 Plus
Dvir\GJ12303-PA 461 GJ12303-PA 130..458 64..384 209 26.9 Plus
Dvir\GJ11128-PA 396 GJ11128-PA 53..352 43..336 198 24 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21937-PA 378 GK21937-PA 1..378 8..389 1621 75.5 Plus
Dwil\GK15424-PA 482 GK15424-PA 150..451 64..349 230 27 Plus
Dwil\GK15419-PA 551 GK15419-PA 191..533 27..389 230 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14380-PA 389 GE14380-PA 1..389 1..389 2043 96.4 Plus
Dyak\GE12044-PA 407 GE12044-PA 50..384 34..356 266 26.1 Plus
Dyak\GE18978-PA 549 GE18978-PA 188..531 25..389 224 24.7 Plus
Dyak\GE18982-PA 469 GE18982-PA 116..440 38..351 216 26 Plus

GH04269.hyp Sequence

Translation from 257 to 1426

> GH04269.hyp
MDGFVVPNNSASLAFDNINLSYGRWDNQLLYRIKDFALLGEQYVDSSEGS
LVCLATQTSVERLNSLPQVAANWQGKMSVALFAAGPEEFVVLQYFVTYMR
LCFANIRENATFHLLTPRDFDKLPRVAALPLNMRGKFDCQYPDRTLKALL
KFRSLKTLQWRQRNTYPQNHMRNLARKGCQTKYVFLTDIDIVPSTNSVPQ
LNHFFRTANCTKSCAYVIPTFEIDVRATFPRSKNALVRLIRKGLARPFHE
KVFIYNQYATNFSKWLSPNTNETEVSVSHVVTNFEFLYEPFYIAVDNAPA
HDERFLGYGFTRNSQVYEMHIAGYQFYVLSPVFTGHWGLQRKQARPAWRE
QQNNANRRKFDVFKSEIFVRYKNDPRLLLKAKKNQILVK*

GH04269.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-PB 389 CG3253-PB 1..389 1..389 2061 100 Plus
CG3253-PA 389 CG3253-PA 1..389 1..389 2061 100 Plus
CG15483-PA 407 CG15483-PA 50..363 34..336 254 25.9 Plus
CG11149-PE 475 CG11149-PE 143..430 64..336 207 27.1 Plus
CG11149-PD 475 CG11149-PD 143..430 64..336 207 27.1 Plus