Clone GH04281 Report

Search the DGRC for GH04281

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:42
Well:81
Vector:pOT2
Associated Gene/TranscriptCycJ-RB
Protein status:GH04281.pep: gold
Preliminary Size:1608
Sequenced Size:1503

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10308 2001-01-01 Release 2 assignment
CG10308 2001-09-19 Blastp of sequenced clone
CG10308 2003-01-01 Sim4 clustering to Release 3
CycJ 2008-04-29 Release 5.5 accounting
CycJ 2008-08-15 Release 5.9 accounting
CycJ 2008-12-18 5.12 accounting

Clone Sequence Records

GH04281.complete Sequence

1503 bp (1503 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058290

> GH04281.complete
CGGAACCGTTGTAGCGCCATGTTTGCGCTCCTTTTGTTTTCTCCTTCATT
TGTTTTGCTTTTTTCCGCCGTTAAGTTCTTGCCTTAAAATCGGTGATTTA
AGGCATTGCATTCAATTTCGATACAATGGAGCAGAAAGTGGCTGCCGAGC
AGAACATCTTCGTCGTCGACCGCAAATTGAAGAAAACTTGCCCGCAAGCA
GATGTCGAGCGCCTGGCTAAGACGCACTGGCTCACCGACTATGCCCGGGA
TATATTTTTGACCATGAGGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTT
ACCTTTCGCCGCAGCTGAACGAGCGCCGAAGAATGCTGCAGTTGCTCAAA
CTGGCGACCAGCGCCCACAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGT
CTACTATATGGATCGCTTTGTTGATTACTACAAAATCCGTCCGGACAAAT
TGCTCCTGGTGGCCATCACTTGTCTTCATATAGCTGCGCAGATCGAAAAC
ACGGATGCGTTTATTCCGCGCTACAGCGAAATGAACCGATTGGTCAAGAA
CGCCTATACGGCATTCGAGTACAAGGCTGTGGAAAGGAAGATCCTGTGCT
TCCTGAACTTCGAGCTAATACGTCCCACCACCGCCAGTTTTGTGGAGCTC
TTCGCCTGCAGTTTTCTCACTCGCTCCGATTTCAAGAACTACATCGAGAT
GTTGGATGAGTACGAGCGGAACCATCACACCCAGCCGTACCAGCGATATA
TAAGCTTCGAAGAGATGCTGTCCATTTTGGCGCAGTTGCTCCTTCGCATG
GCGGATTATACATTGTACAATTTGCCAACGATCTGCCATCCCTTTTGGCT
GCCGCCTGCATTGCTGCAGTTCGCCAGGTCAGCGGGGTCAGGCGCTGGTC
GGAGTACCTAGTTGGACTGACCTCCTATACTGAGGCGAATGTCGAGCCGT
ACATGAACGTTCTGACCGACTATTATTATTACCATGTTATTCAGACCGAC
TACGGTAGTCCCTCTGTTCAGACCAACCAGAGTTTAGCCAGTCCCGATTC
CGGATTCGAGGAGTCCTTCACTGAGAACACAAACCTGGTGGTCTCCGATG
AAGTGGTCACAGTAGAGACCTACAACATAATTACCGTGCAGCTGCAGGAT
CCATCTCCACATTCATCGACTTTCCTTCCCAAAGAGCAAACGAATTTGAA
GCGATCGCGCTTTGAAGACGATACCGAAAACCAGCACCCATTGAAACACG
CCAAAGTGGAGAGTGTAGCCAAAGATTAGTAAAAGGGAAAAACGAAACTA
TTACCATTTGGAGGAAATCCAAATAGCTTAGAAGTGAAATGACATCCATA
ACGTAGATATGGTCTTGTTCAATTGAGTTGAACCTCACCCATATAATAAT
CGTGATGTTATGCTTTAATATATATGTATTTAATATATATTTGAAATTAT
CTTATAAACTTATAAATACAATATGTCAAAAACTCAAAAAAAAAAAAAAA
AAA

GH04281.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 1513 CycJ-RB 6..1498 1..1493 7450 99.9 Plus
CycJ-RA 1544 CycJ-RA 30..1529 1..1493 7355 99.4 Plus
CG14971-RA 2538 CG14971-RA 2445..2538 1493..1400 455 98.9 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3466859..3467524 820..1485 3240 99.1 Plus
chr3L 24539361 chr3L 3466375..3466798 396..819 2075 99.3 Plus
chr3L 24539361 chr3L 3465840..3466048 1..209 1045 100 Plus
chr3L 24539361 chr3L 3466110..3466298 208..396 945 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3467433..3468106 820..1493 3355 99.9 Plus
3L 28110227 3L 3466949..3467372 396..819 2120 100 Plus
3L 28110227 3L 3466414..3466622 1..209 1045 100 Plus
3L 28110227 3L 3466684..3466872 208..396 945 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3467433..3468106 820..1493 3355 99.8 Plus
3L 28103327 3L 3466949..3467372 396..819 2120 100 Plus
3L 28103327 3L 3466414..3466622 1..209 1045 100 Plus
3L 28103327 3L 3466684..3466872 208..396 945 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:50:51 has no hits.

GH04281.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:51:38 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3465840..3466048 1..209 100 -> Plus
chr3L 3466112..3466298 210..396 100 -> Plus
chr3L 3466376..3466798 397..819 99 -> Plus
chr3L 3466859..3467452 820..1413 98 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:13:44 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RA 1..1161 126..1279 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:50 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RA 1..1161 126..1279 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:48:49 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RA 1..1161 126..1279 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:42 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RA 1..1161 126..1279 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:54 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RA 1..1161 126..1279 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:49 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 1..1485 1..1485 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:49 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 1..1485 1..1485 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:48:49 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 1..1471 15..1485 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:42 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 1..1485 1..1485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:54 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 1..1471 15..1485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:38 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3466414..3466622 1..209 100 -> Plus
3L 3466686..3466872 210..396 100 -> Plus
3L 3466950..3467372 397..819 100 -> Plus
3L 3467433..3468098 820..1485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:38 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3466414..3466622 1..209 100 -> Plus
3L 3466686..3466872 210..396 100 -> Plus
3L 3466950..3467372 397..819 100 -> Plus
3L 3467433..3468098 820..1485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:38 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3466414..3466622 1..209 100 -> Plus
3L 3466686..3466872 210..396 100 -> Plus
3L 3466950..3467372 397..819 100 -> Plus
3L 3467433..3468098 820..1485 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:48:49 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3466414..3466622 1..209 100 -> Plus
arm_3L 3466686..3466872 210..396 100 -> Plus
arm_3L 3466950..3467372 397..819 100 -> Plus
arm_3L 3467433..3468098 820..1485 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:15 Download gff for GH04281.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3466414..3466622 1..209 100 -> Plus
3L 3466686..3466872 210..396 100 -> Plus
3L 3466950..3467372 397..819 100 -> Plus
3L 3467433..3468098 820..1485 100   Plus

GH04281.pep Sequence

Translation from 125 to 910

> GH04281.pep
MEQKVAAEQNIFVVDRKLKKTCPQADVERLAKTHWLTDYARDIFLTMREQ
ELSRRPLFYLSPQLNERRRMLQLLKLATSAHKLSRCALHLAVYYMDRFVD
YYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVKNAYTAFEYK
AVERKILCFLNFELIRPTTASFVELFACSFLTRSDFKNYIEMLDEYERNH
HTQPYQRYISFEEMLSILAQLLLRMADYTLYNLPTICHPFWLPPALLQFA
RSAGSGAGRST*

GH04281.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24212-PA 409 GF24212-PA 5..243 6..247 838 66.3 Plus
Dana\GF24509-PA 466 GF24509-PA 180..341 17..178 147 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15144-PA 264 GG15144-PA 1..261 1..261 1265 90.4 Plus
Dere\GG13881-PA 491 GG13881-PA 185..346 17..178 157 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16117-PA 378 GH16117-PA 23..242 26..247 573 50.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-PB 261 CG10308-PB 1..261 1..261 1356 100 Plus
CycJ-PA 386 CG10308-PA 1..231 1..231 1191 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12383-PA 367 GI12383-PA 3..238 4..247 659 55.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13251-PA 725 GL13251-PA 279..481 29..230 603 57.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28605-PA 452 GA28605-PA 7..230 8..230 608 54 Plus
Dpse\GA28604-PA 447 GA28604-PA 1..203 29..230 595 57.6 Plus
Dpse\GA27863-PA 215 GA27863-PA 1..203 29..230 584 57.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14576-PA 387 GM14576-PA 1..231 1..231 1155 94.4 Plus
Dsec\GM24703-PA 490 GM24703-PA 183..344 17..178 152 29.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13768-PA 159 GD13768-PA 1..150 1..150 738 93.3 Plus
Dsim\GD13769-PA 194 GD13769-PA 1..40 192..231 192 92.5 Plus
Dsim\GD12771-PA 490 GD12771-PA 183..344 17..178 151 29.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12272-PA 370 GJ12272-PA 3..225 4..230 717 60.8 Plus
Dvir\GJ14140-PA 238 GJ14140-PA 1..93 136..230 296 62.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20516-PA 458 GK20516-PA 7..241 9..250 645 52.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21368-PA 386 GE21368-PA 1..231 1..231 1108 90.5 Plus
Dyak\GE20173-PA 484 GE20173-PA 178..339 17..178 150 29.3 Plus

GH04281.hyp Sequence

Translation from 125 to 910

> GH04281.hyp
MEQKVAAEQNIFVVDRKLKKTCPQADVERLAKTHWLTDYARDIFLTMREQ
ELSRRPLFYLSPQLNERRRMLQLLKLATSAHKLSRCALHLAVYYMDRFVD
YYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVKNAYTAFEYK
AVERKILCFLNFELIRPTTASFVELFACSFLTRSDFKNYIEMLDEYERNH
HTQPYQRYISFEEMLSILAQLLLRMADYTLYNLPTICHPFWLPPALLQFA
RSAGSGAGRST*

GH04281.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-PB 261 CG10308-PB 1..261 1..261 1356 100 Plus
CycJ-PA 386 CG10308-PA 1..231 1..231 1191 100 Plus