BDGP Sequence Production Resources |
Search the DGRC for GH04443
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 44 |
Well: | 43 |
Vector: | pOT2 |
Associated Gene/Transcript | Vps28-RA |
Protein status: | GH04443.pep: gold |
Preliminary Size: | 791 |
Sequenced Size: | 812 |
Gene | Date | Evidence |
---|---|---|
CG12770 | 2001-01-01 | Release 2 assignment |
CG12770 | 2001-10-10 | Blastp of sequenced clone |
CG12770 | 2003-01-01 | Sim4 clustering to Release 3 |
Vps28 | 2008-04-29 | Release 5.5 accounting |
Vps28 | 2008-08-15 | Release 5.9 accounting |
Vps28 | 2008-12-18 | 5.12 accounting |
812 bp (812 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060620
> GH04443.complete CCACACTGTCAAATCCCTGTGAATCATTGTTTTGTGTTTAAAACTAGAAA ATATTTGAGCCAGAAACAAATTACGAGATGCAGGAACAAAGTCCCGAGCT GTACGAGGAGGTGAAGCTCTTCCGTAACGCCCGCGAGCGCGAGAAGTACG ACAACATGGCCGATCTATACGCAATCATCAACACCATCCAGCAGCTGGAG AAGGCCTACATCCGCGACTGCATTACGCCGCAGGAATACACGGCCGCCTG CTCCAAATACCTGGTGCAGTACAAGGTGGCCTTTAAGCAGGTGCAGTGCG ACGAATTCCCCTCGGTGGAGACGTTCGTTAAGAAATTCCGGCTGGACTGC CCTGCTGCGCTGGAGCGGATCCGCGAGGACCGACCCATCACCATACGCGA CGATAAGGGCAACACCTCCAAATGCATCGCCGAGATCGTGTCGCTGTTCA TCACAATCATGGACAAGCTACGCCTGCAGATCAACACCATGGACGCCCTA CAGCCGGACGTCAAAGACCTGGCTGACAACATGAATCGCCTGTCCCTCAT TCCCGAGGACTTCGACGCCAAGCTGAAGGTGGAGAAGTGGCTGGGCAGCC TGAACGAGATGCAGGCCTCCGACGAGTTGAGCGAGGGCCAGGTCCGCCAG TTCCTCTTCGACCTGGAGTCGGCGTACGCGGACTTCAACAAGCTGCTGCA CAGCCAGTAGCTATCAGTTTCTCATTGTTTACGTGTATCCCTAAATTTAT ATAGCATGTTCCGATATTAAACAAGTTTGATATATCACCTTAAAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps28-RA | 820 | Vps28-RA | 30..820 | 1..791 | 3955 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3966656..3967446 | 791..1 | 3955 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 8079236..8080027 | 792..1 | 3960 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 8080435..8081226 | 792..1 | 3960 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3966656..3967446 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 1..633 | 78..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 1..633 | 78..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 1..633 | 78..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 1..633 | 78..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 1..633 | 78..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 9..799 | 1..791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 30..820 | 1..791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 15..805 | 1..791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 9..799 | 1..791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps28-RA | 15..805 | 1..791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8079237..8080027 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8079237..8080027 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8079237..8080027 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3966742..3967532 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8080436..8081226 | 1..791 | 100 | Minus |
Translation from 77 to 709
> GH04443.hyp MQEQSPELYEEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCIT PQEYTAACSKYLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALERIRE DRPITIRDDKGNTSKCIAEIVSLFITIMDKLRLQINTMDALQPDVKDLAD NMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQVRQFLFDLESAY ADFNKLLHSQ*
Translation from 77 to 709
> GH04443.pep MQEQSPELYEEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCIT PQEYTAACSKYLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALERIRE DRPITIRDDKGNTSKCIAEIVSLFITIMDKLRLQINTMDALQPDVKDLAD NMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQVRQFLFDLESAY ADFNKLLHSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11216-PA | 210 | GF11216-PA | 1..210 | 1..210 | 1068 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10681-PA | 210 | GG10681-PA | 1..210 | 1..210 | 1104 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19992-PA | 210 | GH19992-PA | 1..210 | 1..210 | 1068 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps28-PB | 210 | CG12770-PB | 1..210 | 1..210 | 1076 | 100 | Plus |
Vps28-PA | 210 | CG12770-PA | 1..210 | 1..210 | 1076 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20167-PA | 210 | GI20167-PA | 1..210 | 1..210 | 1060 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10599-PA | 211 | GL10599-PA | 2..211 | 1..210 | 1082 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11803-PA | 211 | GA11803-PA | 2..211 | 1..210 | 1085 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20728-PA | 210 | GM20728-PA | 1..210 | 1..210 | 1110 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15294-PA | 210 | GD15294-PA | 1..210 | 1..210 | 1110 | 100 | Plus |
Dsim\GD10195-PA | 210 | GD10195-PA | 1..210 | 1..210 | 1110 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20232-PA | 210 | GJ20232-PA | 1..210 | 1..210 | 1060 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23164-PA | 210 | GK23164-PA | 1..210 | 1..210 | 1034 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23355-PA | 210 | GE23355-PA | 1..210 | 1..210 | 1106 | 99.5 | Plus |