Clone GH04548 Report

Search the DGRC for GH04548

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:45
Well:48
Vector:pOT2
Associated Gene/TranscriptCG11060-RA
Protein status:GH04548.pep: gold
Preliminary Size:2389
Sequenced Size:2258

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11060 2001-01-01 Release 2 assignment
CG11060 2001-10-10 Blastp of sequenced clone
CG11060 2003-01-01 Sim4 clustering to Release 3
CG11060 2008-04-29 Release 5.5 accounting
CG11060 2008-08-15 Release 5.9 accounting
CG11060 2008-12-18 5.12 accounting

Clone Sequence Records

GH04548.complete Sequence

2258 bp (2258 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060622

> GH04548.complete
ATTAAACCGAGCGCATCGAATCCAAAAAACATCAAAAAATGAGGCCCACG
CAGCACTCCGTCATAAACTCCTTGGGGAAAAAGATTTCGAATCAAACTAT
CAACGATTCGCACTCCAACAAACATAACTTCATGGATATGGAACAAGAGG
AAAAGCAGCCTGAGCATATGTACATGGCCACCCAGACCGTGGAGGACATT
CTTAATGAGGTCCTGTGCATGCAGAATTTCCAGCAAAAGCAGTCGGACAG
CAACCTAGATCAGTTCTGCCACTCGGAGAGGTCCAGGGATCGGAAGCCGG
GCGACGATTTGGACATGGACCCGCGACTGCGCAGCTGGAACCGCGTGCTG
CAGGAGCGTAGGCGACTGCAGGATAGGATCGCTCGGCAGACGGGTAAGCG
GGCCGAGGACGTGCTCTTCAATCGCTCGGCGACCATCGACGAGGCCAACA
AGCGGATGATTCTGCGCGTCCTTGACACCGCAGACAGGTCACGACCTCTT
GCTCGCCTCAAGGACAATGTGACCTTGAACTCCCTGAAGCCGCGCTGTGA
TCCCCATCTCTGCCGCGAGATTAAGGAGCTGTACGCCGCGAAGCCGCAGT
TGCAGGAGGTGGAGTTCGTCGGCCTGCCGCAGGTCACCCAAAAGGAGCTG
GCTGCCACCCGCCTTCATTCCAACGAGATCGAGAGCCAGTGGCAGCGCTC
CCAGGTCTTGAGCGAACGACTTGAGGACAAGAAGCACTCTATTCGACAGG
TGCTTGACTTTGCGCCCGATCTAAATGGGCTGCAGGTCACGCCGGCCTTT
GTGGGCTCGTCCACTAAGAATCTGCCGATCATCAAAATCGACGAAACTTC
CTTGTCTAATATCTCCGGGAACTCCACTCCGGAAGAGGAGGAGGATTCGG
AGTCCGATCTGCTGTCCATAGAGGGGGAGGTAAGCGATAGCTTTCAAGAG
GCGGCACTCGAGGATATTACAAAGGGAATTGTCGAGAGTCAGGACATGGA
TGACGTCAAGGACGTACAAGGTCTGATGATCAACGGGGTGATCCTTGATT
ACCGCAATCCTGTCGGCGCCATAAGCAAAAGCATCAATATGCTGCTGCAA
TGTGAACCATATGAGCGCGTGGTGAAGATACTTTTGGACATTCAGAATCT
AAGTCCGAAGCTGGTGCACGTCTATTGGCTTAGTAAGAACCGCTTGCGTT
CCGACCGGCTGCCCTTGAACTCCGAGATGGTCTTCGACCGCAGCGAGTTC
ATCCTGGAGCCACAGGGTCGCCGCCTCATTCGTGTGATGTTCCAGCCGAA
AAAGGTGGGCCTTTTCACGCAGCGATGGCACGTGAACTTCCAAAAATCGC
CCTTCTGTGGCACCCGCCGCCTGGACGTCGTTCTCCAGGGTCAGTGCACC
ATGCCCGTTCCGTTCCAGAGACGCCTCGAGGGTCACCGACAGGTGCCCCT
AGATAAGCAGCAACAATTGCAGGCCCAGGGCCTTCTGCAAATGCAGGCCA
GTCTGGCTCCCATTATCGAGAACCCTCGACCATTGTGTCCCTACCAAAGA
CATCTTGACGAGCGCGAGGTCTTTAATGCCCAGAACTTCTCTTACCGATG
CCAGCGATACGAGGATCTGGAGGCTCTCAAGGACTTATATCAACTGGCCA
AGAAGCCTCGCGATAGACCCTGGGATTTAAGTATCGAGACCCTGCGTCAC
TTTATTGGCAAGCAGGAGAGTCGCTTCCTGCGCGAGAATCTCCACAACAA
ACTGGTTGCTTTGCTCCAGCCGATGAAGTGCAACAGGTGCTCAGCTTATC
CCTTAATGGAACACAATACGGAGCGGGATAGATCCCGCTTCATTTACGTG
CGTGGCACTATCGCCAGCAAAATCGACGAGTGGGAGGCAATGGTTTTTGG
GCTGGATGAACAGTTCTTTAAGCTGGAGCTCCTCCACTATCTAGGGGAGA
ATTCTTCTCTTCCCGTCGCCTCAGAGCTAGGCCAGAAGAATCGCCAGCAG
GGTCCAGATGAAAACGAAGAAATTCAGATCGTGGAGAAAGTCTCGAAGAG
AGTCAAGGCAAGCAAGTACCTCAAGGACTCTCTCTATATGCACACCTACA
GTCTGCTCTGTGATGCTGCCGAGGACATAGTCTCCGTCATCGAAAGCACC
GCTGATTAGCATTCACAACACCCTTTCCCAGTTTTGGTCATATTTTTTTT
AAGTGGCAACACCCAAATAAAATAAAAAAGCATTTATTATAAAAAAAAAA
AAAAAAAA

GH04548.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11060-RA 2310 CG11060-RA 73..2310 1..2238 11190 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3063351..3064495 1..1145 5725 100 Plus
chr2R 21145070 chr2R 3064586..3065683 1143..2240 5475 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7175958..7177102 1..1145 5725 100 Plus
2R 25286936 2R 7177193..7178291 1143..2241 5495 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7177157..7178301 1..1145 5725 100 Plus
2R 25260384 2R 7178392..7179490 1143..2241 5495 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:18:57 has no hits.

GH04548.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:19:48 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3063351..3064495 1..1145 100 -> Plus
chr2R 3064589..3065683 1146..2240 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:14:13 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 1..2121 39..2159 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:32 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 1..2121 39..2159 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:07 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 1..2121 39..2159 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:35 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 1..2121 39..2159 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:12 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 1..2121 39..2159 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:18 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 73..2310 1..2238 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:32 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 73..2310 1..2238 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:07 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 73..2312 1..2240 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:36 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 73..2310 1..2238 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:12 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11060-RA 73..2312 1..2240 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:48 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7175958..7177102 1..1145 100 -> Plus
2R 7177196..7178290 1146..2240 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:48 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7175958..7177102 1..1145 100 -> Plus
2R 7177196..7178290 1146..2240 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:48 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7175958..7177102 1..1145 100 -> Plus
2R 7177196..7178290 1146..2240 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:07 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3063463..3064607 1..1145 100 -> Plus
arm_2R 3064701..3065795 1146..2240 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:49 Download gff for GH04548.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7177157..7178301 1..1145 100 -> Plus
2R 7178395..7179489 1146..2240 100   Plus

GH04548.pep Sequence

Translation from 38 to 2158

> GH04548.pep
MRPTQHSVINSLGKKISNQTINDSHSNKHNFMDMEQEEKQPEHMYMATQT
VEDILNEVLCMQNFQQKQSDSNLDQFCHSERSRDRKPGDDLDMDPRLRSW
NRVLQERRRLQDRIARQTGKRAEDVLFNRSATIDEANKRMILRVLDTADR
SRPLARLKDNVTLNSLKPRCDPHLCREIKELYAAKPQLQEVEFVGLPQVT
QKELAATRLHSNEIESQWQRSQVLSERLEDKKHSIRQVLDFAPDLNGLQV
TPAFVGSSTKNLPIIKIDETSLSNISGNSTPEEEEDSESDLLSIEGEVSD
SFQEAALEDITKGIVESQDMDDVKDVQGLMINGVILDYRNPVGAISKSIN
MLLQCEPYERVVKILLDIQNLSPKLVHVYWLSKNRLRSDRLPLNSEMVFD
RSEFILEPQGRRLIRVMFQPKKVGLFTQRWHVNFQKSPFCGTRRLDVVLQ
GQCTMPVPFQRRLEGHRQVPLDKQQQLQAQGLLQMQASLAPIIENPRPLC
PYQRHLDEREVFNAQNFSYRCQRYEDLEALKDLYQLAKKPRDRPWDLSIE
TLRHFIGKQESRFLRENLHNKLVALLQPMKCNRCSAYPLMEHNTERDRSR
FIYVRGTIASKIDEWEAMVFGLDEQFFKLELLHYLGENSSLPVASELGQK
NRQQGPDENEEIQIVEKVSKRVKASKYLKDSLYMHTYSLLCDAAEDIVSV
IESTAD*

GH04548.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12240-PA 738 GF12240-PA 8..736 11..705 1955 54 Plus
Dana\GF12241-PA 760 GF12241-PA 75..755 34..704 770 29.6 Plus
Dana\GF12701-PA 727 GF12701-PA 69..724 47..704 642 29.4 Plus
Dana\GF12700-PA 535 GF12700-PA 181..531 313..706 285 25.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23264-PA 704 GG23264-PA 1..704 1..706 3145 87.3 Plus
Dere\GG23265-PA 747 GG23265-PA 82..742 51..704 781 31.8 Plus
Dere\GG23267-PA 710 GG23267-PA 93..707 89..704 722 30.2 Plus
Dere\GG23266-PA 542 GG23266-PA 204..540 328..705 380 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21520-PA 736 GH21520-PA 77..733 14..704 1154 38.5 Plus
Dgri\GH21521-PA 704 GH21521-PA 33..699 34..704 800 30.8 Plus
Dgri\GH21523-PA 693 GH21523-PA 18..690 13..704 723 30.5 Plus
Dgri\GH21522-PA 508 GH21522-PA 156..505 328..704 447 31.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11060-PA 706 CG11060-PA 1..706 1..706 3649 100 Plus
CG33140-PA 720 CG33140-PA 59..715 51..704 781 31.3 Plus
CG30384-PA 708 CG30384-PA 66..705 49..704 762 29.7 Plus
CG30385-PA 536 CG30385-PA 194..533 328..704 358 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19490-PA 689 GI19490-PA 93..686 95..704 1112 40.6 Plus
Dmoj\GI19491-PA 740 GI19491-PA 66..735 48..704 764 31.1 Plus
Dmoj\GI19493-PA 672 GI19493-PA 54..669 51..704 727 29.5 Plus
Dmoj\GI19492-PA 563 GI19492-PA 47..560 88..704 422 26.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26004-PA 819 GL26004-PA 154..814 49..704 805 32.4 Plus
Dper\GL13788-PA 696 GL13788-PA 52..693 47..704 704 29.6 Plus
Dper\GL24846-PA 874 GL24846-PA 29..474 46..534 392 26.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25232-PA 768 GA25232-PA 103..765 49..706 802 32.1 Plus
Dpse\GA26794-PA 709 GA26794-PA 52..706 47..704 694 30 Plus
Dpse\GA23528-PA 644 GA23528-PA 29..644 46..705 562 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20935-PA 706 GM20935-PA 1..706 1..706 3677 97 Plus
Dsec\GM20939-PA 708 GM20939-PA 61..707 47..706 757 29.7 Plus
Dsec\GM20937-PA 539 GM20937-PA 172..534 360..704 472 32.7 Plus
Dsec\GM20938-PA 536 GM20938-PA 194..534 328..705 364 28.6 Plus
Dsec\GM20936-PA 195 GM20936-PA 59..194 51..193 188 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10461-PA 706 GD10461-PA 1..706 1..706 3671 96.6 Plus
Dsim\GD10462-PA 717 GD10462-PA 56..712 51..704 756 30.7 Plus
Dsim\GD10465-PA 679 GD10465-PA 64..605 47..606 587 28.2 Plus
Dsim\GD10464-PA 222 GD10464-PA 3..220 449..705 254 31.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15152-PA 738 GJ15152-PA 74..737 8..706 1178 38.2 Plus
Dvir\GJ15153-PA 713 GJ15153-PA 62..708 51..704 815 31.9 Plus
Dvir\GJ15156-PA 707 GJ15156-PA 85..704 89..704 730 30.5 Plus
Dvir\GJ15155-PA 597 GJ15155-PA 33..594 75..704 480 29 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21792-PA 693 GK21792-PA 65..691 67..705 1196 41.7 Plus
Dwil\GK19405-PA 713 GK19405-PA 93..710 93..704 877 34 Plus
Dwil\GK21794-PA 718 GK21794-PA 38..713 40..704 809 33 Plus
Dwil\GK19404-PA 598 GK19404-PA 41..595 87..704 540 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19112-PA 706 GE19112-PA 1..706 1..706 3233 89.2 Plus
Dyak\GE19113-PA 748 GE19113-PA 82..743 51..704 761 31.1 Plus
Dyak\GE19115-PA 707 GE19115-PA 59..704 47..704 738 30.2 Plus
Dyak\GE19114-PA 542 GE19114-PA 165..540 292..705 387 28.1 Plus

GH04548.hyp Sequence

Translation from 38 to 2158

> GH04548.hyp
MRPTQHSVINSLGKKISNQTINDSHSNKHNFMDMEQEEKQPEHMYMATQT
VEDILNEVLCMQNFQQKQSDSNLDQFCHSERSRDRKPGDDLDMDPRLRSW
NRVLQERRRLQDRIARQTGKRAEDVLFNRSATIDEANKRMILRVLDTADR
SRPLARLKDNVTLNSLKPRCDPHLCREIKELYAAKPQLQEVEFVGLPQVT
QKELAATRLHSNEIESQWQRSQVLSERLEDKKHSIRQVLDFAPDLNGLQV
TPAFVGSSTKNLPIIKIDETSLSNISGNSTPEEEEDSESDLLSIEGEVSD
SFQEAALEDITKGIVESQDMDDVKDVQGLMINGVILDYRNPVGAISKSIN
MLLQCEPYERVVKILLDIQNLSPKLVHVYWLSKNRLRSDRLPLNSEMVFD
RSEFILEPQGRRLIRVMFQPKKVGLFTQRWHVNFQKSPFCGTRRLDVVLQ
GQCTMPVPFQRRLEGHRQVPLDKQQQLQAQGLLQMQASLAPIIENPRPLC
PYQRHLDEREVFNAQNFSYRCQRYEDLEALKDLYQLAKKPRDRPWDLSIE
TLRHFIGKQESRFLRENLHNKLVALLQPMKCNRCSAYPLMEHNTERDRSR
FIYVRGTIASKIDEWEAMVFGLDEQFFKLELLHYLGENSSLPVASELGQK
NRQQGPDENEEIQIVEKVSKRVKASKYLKDSLYMHTYSLLCDAAEDIVSV
IESTAD*

GH04548.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11060-PA 706 CG11060-PA 1..706 1..706 3649 100 Plus
CG33140-PA 720 CG33140-PA 59..715 51..704 781 31.3 Plus
CG30384-PA 708 CG30384-PA 66..705 49..704 762 29.7 Plus
CG30385-PA 536 CG30385-PA 194..533 328..704 358 28.4 Plus