Clone GH04557 Report

Search the DGRC for GH04557

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:45
Well:57
Vector:pOT2
Associated Gene/TranscriptCG8206-RA
Protein status:GH04557.pep: gold
Preliminary Size:1300
Sequenced Size:1019

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8206 2002-06-13 Blastp of sequenced clone
CG8206 2003-01-01 Sim4 clustering to Release 3
CG8206 2008-04-29 Release 5.5 accounting
CG8206 2008-08-15 Release 5.9 accounting
CG8206 2008-12-18 5.12 accounting

Clone Sequence Records

GH04557.complete Sequence

1019 bp (1019 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122092

> GH04557.complete
ATCGCTCCACTTAACCATTTTCTTCCCCATTTGGGGCAAAACAAAACGCA
GTAACTACCCCACATTCAGCACGTGCGGCGCCAGAATTCAGGACGCACTG
CAGCGGGCGGCAAGAGCAGAAAGCAACGCGGATGTGCAACACCGCTTAGT
AGCAACATAAAATGAACGCATTGCGCAACATCTTCACATCGCGAACTCTC
AACTATTTGCGCCAGAATGGACAAAACGCGATCCTCAACGCCACCCAGCA
GCAACAAGCGGTGGACGCCGTGCCGCTAACCAACGATGCCGAGCAGCACC
TAAAATCGTCGCGTCCAGCACCGCTTTCCATACCGCGCTCCATACTCGAT
GCGTGCCATTTCACGGCCAAGCAGTTTGACCTGGGAGGCTCCACGTCCGG
AAACCAGGCGAATGGCTCTCTGTCGCCGACGACACTGAAGCGCTTCCGAC
GCATGCAACGCCGCATGGAGCTGGTGTACCGCTGCAAGCTGTGCAACACC
CGCAACACGAAGACCATCAGCGAAGAGGCCTACTACAGCGGCGTGGTGAT
CCTACAGTGCGACGGCTGTGCCGTCGACCATCTGATCAAGGACAATCTGG
GACTGTTCACCGGCAGCGATGGCGATAGCAGCATTAGCTCTGGAATCAGT
ACCAGCAAGAATATCGACCAGGTGCTGGCCGACCGGCATGCCCGCGTCCG
GGTGATCAAGGTGAACGAGCGCGGCGAGCTGATTTAGGAACTCTAGTCAA
AGGGGCATCAGTAGAGGTGAGAACCTGGTGCCGTCAACCTGCGAATCGTG
TCTGAGGAGGACACACTCGACACGGGGTGGCACATTGAACCCAAGCAACC
AAGCACCCAAGTACCCAACTGCAAACCGGAATCCCACATTCTGTTTCCGA
GCTCAGACGGCTGTATATAATAATTGTACTGTAATTGTTGATTGTTTCGG
GCCGTGAGTAATGCCTAAAAAAGTGATTAAAGGAACGACCAGTTCAAAAG
CAAAAAAAAAAAAAAAAAA

GH04557.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-RA 1001 CG8206-RA 1..1001 1..1001 5005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15629077..15630077 1..1001 4930 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15739242..15740252 1..1011 5040 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15747340..15748350 1..1011 5040 99.9 Plus
Blast to na_te.dros performed 2019-03-16 10:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 2481..2526 300..345 113 71.7 Plus
TART-C 11124 TART-C TARTC 11124bp 3933..3978 300..345 113 71.7 Plus

GH04557.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:23:13 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15629077..15630077 1..1001 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:14:15 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..576 162..737 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:19:44 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..576 162..737 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:25 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..576 162..737 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:46 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..576 162..737 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:55 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..576 162..737 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:45:13 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..997 5..1001 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:19:43 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..997 5..1001 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:25 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 13..1013 1..1001 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:46 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..997 5..1001 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:55 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 13..1013 1..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:13 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
X 15739242..15740242 1..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:13 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
X 15739242..15740242 1..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:13 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
X 15739242..15740242 1..1001 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:25 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15633275..15634275 1..1001 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:07 Download gff for GH04557.complete
Subject Subject Range Query Range Percent Splice Strand
X 15747340..15748340 1..1001 100   Plus

GH04557.pep Sequence

Translation from 161 to 736

> GH04557.pep
MNALRNIFTSRTLNYLRQNGQNAILNATQQQQAVDAVPLTNDAEQHLKSS
RPAPLSIPRSILDACHFTAKQFDLGGSTSGNQANGSLSPTTLKRFRRMQR
RMELVYRCKLCNTRNTKTISEEAYYSGVVILQCDGCAVDHLIKDNLGLFT
GSDGDSSISSGISTSKNIDQVLADRHARVRVIKVNERGELI*

GH04557.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19477-PA 190 GF19477-PA 1..190 1..191 772 87.5 Plus
Dana\GF22240-PA 169 GF22240-PA 81..153 97..179 196 44.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17905-PA 191 GG17905-PA 1..191 1..191 897 96.3 Plus
Dere\GG19380-PA 121 GG19380-PA 34..106 97..179 190 43.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24157-PA 181 GH24157-PA 1..181 1..191 656 68 Plus
Dgri\GH24435-PA 164 GH24435-PA 79..161 98..191 193 42.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-PB 191 CG8206-PB 1..191 1..191 974 100 Plus
CG8206-PA 191 CG8206-PA 1..191 1..191 974 100 Plus
CG12379-PB 174 CG12379-PB 87..159 97..179 194 44.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14660-PA 187 GI14660-PA 1..187 1..191 657 70.6 Plus
Dmoj\GI16194-PA 108 GI16194-PA 22..102 97..176 196 44.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15020-PA 187 GL15020-PA 1..187 1..191 779 78.6 Plus
Dper\GL16522-PA 188 GL16522-PA 96..167 98..179 203 46.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20897-PA 187 GA20897-PA 1..187 1..191 781 78.6 Plus
Dpse\GA11595-PA 178 GA11595-PA 86..157 98..179 201 46.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22571-PA 84 GM22571-PA 1..82 1..82 407 95.1 Plus
Dsec\GM22535-PA 119 GM22535-PA 32..104 97..179 197 44.6 Plus
Dsec\GM22572-PA 59 GM22572-PA 14..56 111..152 187 88.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17233-PA 191 GD17233-PA 1..191 1..191 980 97.4 Plus
Dsim\GD15783-PA 119 GD15783-PA 32..104 97..179 197 44.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14731-PA 181 GJ14731-PA 1..181 1..191 701 73.1 Plus
Dvir\GJ16534-PA 165 GJ16534-PA 80..159 98..176 188 42.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25634-PA 200 GK25634-PA 1..200 1..191 637 67 Plus
Dwil\GK20094-PA 96 GK20094-PA 1..79 102..191 193 44.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17213-PA 191 GE17213-PA 1..191 1..191 884 94.8 Plus
Dyak\GE16027-PA 177 GE16027-PA 27..162 30..179 196 32.7 Plus

GH04557.hyp Sequence

Translation from 161 to 736

> GH04557.hyp
MNALRNIFTSRTLNYLRQNGQNAILNATQQQQAVDAVPLTNDAEQHLKSS
RPAPLSIPRSILDACHFTAKQFDLGGSTSGNQANGSLSPTTLKRFRRMQR
RMELVYRCKLCNTRNTKTISEEAYYSGVVILQCDGCAVDHLIKDNLGLFT
GSDGDSSISSGISTSKNIDQVLADRHARVRVIKVNERGELI*

GH04557.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-PB 191 CG8206-PB 1..191 1..191 974 100 Plus
CG8206-PA 191 CG8206-PA 1..191 1..191 974 100 Plus
CG12379-PB 174 CG12379-PB 87..159 97..179 194 44.6 Plus