Clone GH04560 Report

Search the DGRC for GH04560

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:45
Well:60
Vector:pOT2
Associated Gene/TranscriptCG18815-RA
Protein status:GH04560.pep: gold
Preliminary Size:1300
Sequenced Size:1238

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18815 2001-01-01 Release 2 assignment
CG18815 2002-03-19 Blastp of sequenced clone
CG18815 2003-01-01 Sim4 clustering to Release 3
CG18815 2008-04-29 Release 5.5 accounting
CG18815 2008-08-15 Release 5.9 accounting
CG18815 2008-12-18 5.12 accounting

Clone Sequence Records

GH04560.complete Sequence

1238 bp (1238 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094672

> GH04560.complete
AACGCAGCTGCATGAATTGTCGTAGTTGAGCGAATTTAAACAAATTAACA
CAATACTTGTGGTATTACCTGAAATCCGCTGACACCGAAAAAAGCGACGA
AAGCAGCGCCAAGTCGCCGAATCGCAGAGTACCTGGAATAGGAATAGTGC
GTCCCCAGTAGAGGCTAAACTGAACAGCAGACATGGCTGCGCCGGTCATT
GTCGAGGCCACGGTCAAGCAAACCGCCACGCTGATCTTCATGCACGGCCT
GGGTGATACGGGTCATGGCTGGAGCAGTGCCCTAGCCGCCATCCGCCCAC
CTTTCATGAAAGTCATCTGCCCCACGGCGCCCACACAGCCCGTTTCGCTG
AACGCCGGCTTCCGCATGCCGTCGTGGTTTGACCTGAAGACGCTGGACAT
CGGTGGGCCCGAGGACGAGCCGGGCATCCAGTCGGCGCGTGATAGTGTGC
ACGGTATGATCCAGAAGGAGATTAGCGCTGGGATTCCGGCCAATCGCATT
GTCCTGGGCGGATTCTCGCAGGGCGGAGCCTTGGCACTGTACTCGGCACT
CACGTACGATCAGCCGCTGGCCGGCGTGGTGGCCCTATCCTGTTGGCTGC
CGCTGCACAAGCAGTTCCCAGGCGCCAAGGTGAACAGCGATGATGTGCCG
ATTTTCCAGGCGCATGGCGACTACGATCCCGTGGTGCCGTACAAATTCGG
CCAGCTGAGCGCCAGCCTGCTCAAGTCGTTCATGAAGAATGTGACGTTCA
AGACGTACAGTGGACTATCGCACTCGTCGTCCGACGACGAAATGGATGAC
GTCAAGGACATCATCAGTAAATGGGTAAACTAACTTCCACTGAACCATAG
CACTCTTAGAACGTACGAAAGCCCCCGACCCAGCCCGTTGCATTCCAACT
ATTCACGCAATATGGAGCGCAGTAAGAGAGTCACACTGAGAGTTATACGA
GTAGGCTCTCTCGTAGCCCAATTATGGAAATTATCACTGAAAAATCAATT
CGAAAAGCAATCAATTATTATACACACACGGTAGCTATACCTAATTAAAT
GCCAAAATACAAGCAATTTGCGAGGGAAATTCTCCAGCGCGAGACGTTTC
AGAGTATAGAAGCAACTGACTTTGATATTTCTTCGCTGCTAATTATTTCG
GTTTACTTATTTGGGACTTGTTCGTATTTAAATTGAAATTAATAAAGTTA
TATAATCAAAGAACAACTAAAAAAAAAAAAAAAAAAAA

GH04560.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-RA 1437 CG18815-RA 64..1287 1..1224 6105 99.9 Plus
CG18815-RB 1261 CG18815-RB 106..1260 70..1224 5760 99.9 Plus
CG18815-RC 1260 CG18815-RC 107..1259 72..1224 5750 99.9 Plus
CG18815-RB 1261 CG18815-RB 47..107 1..61 305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11619871..11620416 262..807 2685 99.5 Plus
chr3L 24539361 chr3L 11620490..11620903 805..1218 2070 100 Plus
chr3L 24539361 chr3L 11619249..11619412 71..234 805 99.4 Plus
chr3L 24539361 chr3L 11618973..11619043 1..71 355 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11628960..11629505 262..807 2730 100 Plus
3L 28110227 3L 11629579..11629998 805..1224 2085 99.8 Plus
3L 28110227 3L 11628342..11628505 71..234 805 99.4 Plus
3L 28110227 3L 11628066..11628136 1..71 355 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11622060..11622605 262..807 2730 100 Plus
3L 28103327 3L 11622679..11623098 805..1224 2085 99.7 Plus
3L 28103327 3L 11621442..11621605 71..234 805 99.3 Plus
3L 28103327 3L 11621166..11621236 1..71 355 100 Plus
3L 28103327 3L 11621662..11621694 230..262 165 100 Plus
Blast to na_te.dros performed 2019-03-16 14:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker 7256 Stalker STALKER 7256bp 6704..6823 943..1061 120 57.9 Plus

GH04560.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:52:38 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11618973..11619043 1..71 100 -> Plus
chr3L 11619250..11619408 72..230 100 -> Plus
chr3L 11619470..11619501 231..262 96 -> Plus
chr3L 11619872..11620415 263..806 99 -> Plus
chr3L 11620492..11620903 807..1218 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:14:27 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RC 1..651 183..833 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:39 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RC 1..651 183..833 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:09 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 1..651 183..833 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:50 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RC 1..651 183..833 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:33:51 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 1..651 183..833 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:41 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 1..1214 5..1218 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:39 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 1..1214 5..1218 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:09 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 30..1247 1..1218 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:51 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 1..1214 5..1218 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:51 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 30..1247 1..1218 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:38 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11628066..11628136 1..71 100 -> Plus
3L 11628343..11628501 72..230 100 -> Plus
3L 11628563..11628594 231..262 100 -> Plus
3L 11628961..11629504 263..806 100 -> Plus
3L 11629581..11629992 807..1218 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:38 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11628066..11628136 1..71 100 -> Plus
3L 11628343..11628501 72..230 100 -> Plus
3L 11628563..11628594 231..262 100 -> Plus
3L 11628961..11629504 263..806 100 -> Plus
3L 11629581..11629992 807..1218 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:38 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11628066..11628136 1..71 100 -> Plus
3L 11628343..11628501 72..230 100 -> Plus
3L 11628563..11628594 231..262 100 -> Plus
3L 11628961..11629504 263..806 100 -> Plus
3L 11629581..11629992 807..1218 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:09 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11621166..11621236 1..71 100 -> Plus
arm_3L 11621443..11621601 72..230 100 -> Plus
arm_3L 11621663..11621694 231..262 100 -> Plus
arm_3L 11622061..11622604 263..806 100 -> Plus
arm_3L 11622681..11623092 807..1218 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:35 Download gff for GH04560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11622061..11622604 263..806 100 -> Plus
3L 11622681..11623092 807..1218 100   Plus
3L 11621166..11621236 1..71 100 -> Plus
3L 11621443..11621601 72..230 100 -> Plus
3L 11621663..11621694 231..262 100 -> Plus

GH04560.hyp Sequence

Translation from 182 to 832

> GH04560.hyp
MAAPVIVEATVKQTATLIFMHGLGDTGHGWSSALAAIRPPFMKVICPTAP
TQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISAG
IPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKV
NSDDVPIFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSS
DDEMDDVKDIISKWVN*

GH04560.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-PC 216 CG18815-PC 1..216 1..216 1134 100 Plus
CG18815-PB 216 CG18815-PB 1..216 1..216 1134 100 Plus
CG18815-PA 216 CG18815-PA 1..216 1..216 1134 100 Plus
CG18815-PD 221 CG18815-PD 1..214 1..214 1124 100 Plus
CG18815-PE 232 CG18815-PE 1..214 1..214 1124 100 Plus

GH04560.pep Sequence

Translation from 182 to 832

> GH04560.pep
MAAPVIVEATVKQTATLIFMHGLGDTGHGWSSALAAIRPPFMKVICPTAP
TQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISAG
IPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKV
NSDDVPIFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSS
DDEMDDVKDIISKWVN*

GH04560.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25278-PA 216 GF25278-PA 1..216 1..216 1128 98.1 Plus
Dana\GF17085-PA 235 GF17085-PA 8..220 7..215 281 33.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15517-PA 216 GG15517-PA 1..216 1..216 1132 98.6 Plus
Dere\GG17261-PA 235 GG17261-PA 4..220 3..211 268 33.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14861-PA 216 GH14861-PA 1..216 1..216 1083 93.1 Plus
Dgri\GH19562-PA 232 GH19562-PA 8..218 12..212 247 30.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-PC 216 CG18815-PC 1..216 1..216 1134 100 Plus
CG18815-PB 216 CG18815-PB 1..216 1..216 1134 100 Plus
CG18815-PA 216 CG18815-PA 1..216 1..216 1134 100 Plus
CG18815-PD 221 CG18815-PD 1..214 1..214 1124 100 Plus
CG18815-PE 232 CG18815-PE 1..214 1..214 1124 100 Plus
CG6567-PB 235 CG6567-PB 8..220 7..211 267 34.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13712-PA 216 GI13712-PA 1..216 1..216 1092 94 Plus
Dmoj\GI15223-PA 216 GI15223-PA 3..211 9..211 270 32.1 Plus
Dmoj\GI23857-PA 232 GI23857-PA 8..219 12..213 257 32.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16272-PA 216 GL16272-PA 1..216 1..216 1113 96.3 Plus
Dper\GL21926-PA 214 GL21926-PA 4..199 3..190 273 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15093-PA 216 GA15093-PA 1..216 1..216 1113 96.3 Plus
Dpse\GA19689-PA 235 GA19689-PA 4..220 3..211 282 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25286-PA 216 GM25286-PA 1..216 1..216 1139 99.5 Plus
Dsec\GM26145-PA 235 GM26145-PA 4..222 3..213 263 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14317-PA 216 GD14317-PA 1..216 1..216 1139 99.5 Plus
Dsim\GD20698-PA 235 GD20698-PA 4..222 3..213 268 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14054-PA 216 GJ14054-PA 1..216 1..216 1091 93.1 Plus
Dvir\GJ10571-PA 232 GJ10571-PA 8..219 12..213 273 33 Plus
Dvir\GJ17261-PA 217 GJ17261-PA 7..214 12..213 254 32.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17177-PA 216 GK17177-PA 1..216 1..216 1119 96.3 Plus
Dwil\GK13386-PA 233 GK13386-PA 7..218 10..211 284 34 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21832-PA 216 GE21832-PA 1..216 1..216 1132 98.6 Plus
Dyak\GE24662-PA 235 GE24662-PA 4..220 3..211 266 33.2 Plus