Clone GH04653 Report

Search the DGRC for GH04653

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:53
Vector:pOT2
Associated Gene/Transcriptking-tubby-RA
Protein status:GH04653.pep: wuzgold
Preliminary Size:1867
Sequenced Size:1878

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9398 2001-01-01 Release 2 assignment
CG9398 2001-10-10 Blastp of sequenced clone
CG9398 2003-01-01 Sim4 clustering to Release 3
king-tubby 2008-04-29 Release 5.5 accounting
king-tubby 2008-08-15 Release 5.9 accounting
king-tubby 2008-12-18 5.12 accounting

Clone Sequence Records

GH04653.complete Sequence

1878 bp (1878 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060625

> GH04653.complete
TCAGTGCACTTGAAATCGCAATTATTTGATTTATTATCTTATTACCTTAG
GTGCGCCAGCTGATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGCCGGG
AATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGGATGC
GCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTTCATC
AGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCGGCGG
CATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAACATGC
GCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGATCTCA
TCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTGAGCA
GCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAGAAAC
CACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGACTAC
ACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCATGGC
CTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGGACGG
GGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATATCGAC
CAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCCGCAT
TACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTACTACT
TGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGGTCGC
AAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATCCCAC
GGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCTAATG
TCTTTGGCACATCCTTCACGGTCTTTGACAACGGCAACAAGGAGAGCACA
GAGAGTCCTCGACTCGACTTGGCCGTCATCATTTATGACACCAACATTTT
GGGATTCAAGGGGCCACGCAACATGACTGTTATACTGCCCGGCATGACTG
AGGACGATCAGCGTGTCAAGATCAGTTCGGCGGATCCCAAACAGCAGGGC
ATCCTTGACCTATGGAAAATGAAGAACATGGACAACATCGTGGAGCTGCA
CAATAAGACGCCAGTGTGGAACGATGAAACCCAATCGTATGTGCTCAACT
TTCATGGGCGCGTCACCCAGGCGTCGGTGAAGAACTTTCAGTTGGTCCAC
GACTCCGATCCGGAGTACATAGTAATGCAGTTCGGCCGCACCTCGGAGGA
CGTCTTCACCATGGACTATCGCTATCCCCTGTGCGCCATGCAGGCATTCG
CCATTGCCCTCAGTAGTTTCGATGGCAAAATAGCCTGCGAGTGAGCTGGC
TGGGATCCTCGGGTTGGCCCGTTGCCTTATGTACAGCTGATTATCTGGAG
TGCGGATCAAGTCGCTCCGGGCGGATCATTGTTGAAATTATTATCGGAAA
TCTAGTCACTCGAAGTCGGGTTTTGGTAGACCATCGTTGAAATGAGTAAT
GTAGTTAGTAGCTACTCGTATCGCGTATCATTGTATAACGTATATTCAGA
ATGTGCTCACCGATTTTATAAGAAATTATTTAGGACAGGTCCTACAACTT
TGTAAATCTAAATGTGCCCCTTTTAGCGATAAGTTCACTTGTAAGCGATT
CGAAGTCAAGGTCATTTAAAGTAATATCAGTTTTATAATCAGCATATAGC
AACAAATCAAGGACTAATGTAAACTATTTAAAATGCCACTACTATTAGTC
GGTAAGAGAGCACTACTAACTTGTACTAAGCTCTAAATAAATACAAACAG
CTATTGATCAAAAAAAAAAAAAAAAAAA

GH04653.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
king-tubby-RA 1870 king-tubby-RA 1..1865 1..1865 9325 100 Plus
king-tubby-RB 2568 king-tubby-RB 762..2568 53..1859 9035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17009413..17010147 1123..1859 3530 98.9 Plus
chr2R 21145070 chr2R 17008445..17008915 327..797 2310 99.4 Plus
chr2R 21145070 chr2R 17008074..17008348 53..327 1360 99.6 Plus
chr2R 21145070 chr2R 17008969..17009162 794..987 910 97.9 Plus
chr2R 21145070 chr2R 17009219..17009356 987..1124 675 99.3 Plus
chr2R 21145070 chr2R 17007943..17007994 2..53 260 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21122968..21123710 1123..1865 3715 100 Plus
2R 25286936 2R 21122000..21122470 327..797 2355 100 Plus
2R 25286936 2R 21121629..21121903 53..327 1375 100 Plus
2R 25286936 2R 21122524..21122717 794..987 970 100 Plus
2R 25286936 2R 21122774..21122911 987..1124 690 100 Plus
2R 25286936 2R 21121497..21121549 1..53 265 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21124167..21124909 1123..1865 3715 100 Plus
2R 25260384 2R 21123199..21123669 327..797 2355 100 Plus
2R 25260384 2R 21122828..21123102 53..327 1375 100 Plus
2R 25260384 2R 21123723..21123916 794..987 970 100 Plus
2R 25260384 2R 21123973..21124110 987..1124 690 100 Plus
2R 25260384 2R 21122696..21122748 1..53 265 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:40:04 has no hits.

GH04653.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:41:11 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17007942..17007994 1..53 98 -> Plus
chr2R 17008075..17008348 54..327 99 -> Plus
chr2R 17008446..17008913 328..795 99 -> Plus
chr2R 17008971..17009161 796..986 97 -> Plus
chr2R 17009219..17009356 987..1124 99 -> Plus
chr2R 17009415..17010147 1125..1859 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:14:54 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 38..1383 49..1394 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:39 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 38..1383 49..1394 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:41:56 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 38..1383 49..1394 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:24 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 38..1383 49..1394 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:07 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 38..1383 49..1394 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:21:04 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RA 1..1859 1..1859 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:39 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RA 1..1859 1..1859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:56 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 686..2496 49..1859 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:25 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RA 1..1859 1..1859 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:07 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 686..2496 49..1859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:11 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21122774..21122911 987..1124 100 -> Plus
2R 21121497..21121549 1..53 100 -> Plus
2R 21121630..21121903 54..327 100 -> Plus
2R 21122001..21122468 328..795 100 -> Plus
2R 21122526..21122716 796..986 100 -> Plus
2R 21122970..21123704 1125..1859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:11 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21122774..21122911 987..1124 100 -> Plus
2R 21121497..21121549 1..53 100 -> Plus
2R 21121630..21121903 54..327 100 -> Plus
2R 21122001..21122468 328..795 100 -> Plus
2R 21122526..21122716 796..986 100 -> Plus
2R 21122970..21123704 1125..1859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:11 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21122774..21122911 987..1124 100 -> Plus
2R 21121497..21121549 1..53 100 -> Plus
2R 21121630..21121903 54..327 100 -> Plus
2R 21122001..21122468 328..795 100 -> Plus
2R 21122526..21122716 796..986 100 -> Plus
2R 21122970..21123704 1125..1859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:56 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17009002..17009054 1..53 100 -> Plus
arm_2R 17009135..17009408 54..327 100 -> Plus
arm_2R 17009506..17009973 328..795 100 -> Plus
arm_2R 17010031..17010221 796..986 100 -> Plus
arm_2R 17010279..17010416 987..1124 100 -> Plus
arm_2R 17010475..17011209 1125..1859 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:41 Download gff for GH04653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21122829..21123102 54..327 100 -> Plus
2R 21123200..21123667 328..795 100 -> Plus
2R 21123725..21123915 796..986 100 -> Plus
2R 21123973..21124110 987..1124 100 -> Plus
2R 21124169..21124903 1125..1859 100   Plus
2R 21122696..21122748 1..53 100 -> Plus

GH04653.hyp Sequence

Translation from 62 to 1393

> GH04653.hyp
MEAYIRQKRASPGMVQASDLQINRPMSGMRSNSRELHAYDGPMQFISSPQ
NPDQILTNGSPGGINPVAMNTSRNHSNNMRSLSTINQEADLIEEISSHEL
EDEESSPVTVIEQHQQSASHSANSTQSQKPRARQHSFSDNLDEDDYTNRN
VAGAAPVRPAGMASSPYKDATLDGSSNGTGNGTGGESEGDVIGNIDQFVM
QPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGGRKRKK
SKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNGNKESTESPR
LDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDL
WKMKNMDNIVELHNKTPVWNDETQSYVLNFHGRVTQASVKNFQLVHDSDP
EYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIALSSFDGKIACE*

GH04653.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-PB 460 CG9398-PB 18..460 1..443 2319 100 Plus
ktub-PC 469 CG9398-PC 18..469 1..443 2299 98 Plus
Tusp-PG 1430 CG5586-PG 1354..1424 362..435 195 50 Plus
Tusp-PE 1432 CG5586-PE 1356..1426 362..435 195 50 Plus
Tusp-PD 1432 CG5586-PD 1356..1426 362..435 195 50 Plus

GH04653.pep Sequence

Translation from 62 to 1393

> GH04653.pep
MEAYIRQKRASPGMVQASDLQINRPMSGMRSNSRELHAYDGPMQFISSPQ
NPDQILTNGSPGGINPVAMNTSRNHSNNMRSLSTINQEADLIEEISSHEL
EDEESSPVTVIEQHQQSASHSANSTQSQKPRARQHSFSDNLDEDDYTNRN
VAGAAPVRPAGMASSPYKDATLDGSSNGTGNGTGGESEGDVIGNIDQFVM
QPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGGRKRKK
SKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNGNKESTESPR
LDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDL
WKMKNMDNIVELHNKTPVWNDETQSYVLNFHGRVTQASVKNFQLVHDSDP
EYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIALSSFDGKIACE*

GH04653.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11934-PA 449 GF11934-PA 9..449 1..443 2311 96.6 Plus
Dana\GF16293-PA 1419 GF16293-PA 1343..1418 362..440 206 46.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22088-PA 448 GG22088-PA 6..448 1..443 2387 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20719-PA 447 GH20719-PA 8..447 1..443 1931 85.7 Plus
Dgri\GH19263-PA 1442 GH19263-PA 1366..1441 362..440 206 46.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-PB 460 CG9398-PB 18..460 1..443 2319 100 Plus
ktub-PC 469 CG9398-PC 18..469 1..443 2299 98 Plus
Tusp-PG 1430 CG5586-PG 1354..1424 362..435 195 50 Plus
Tusp-PE 1432 CG5586-PE 1356..1426 362..435 195 50 Plus
Tusp-PD 1432 CG5586-PD 1356..1426 362..435 195 50 Plus
Tusp-PF 1433 CG5586-PF 1357..1427 362..435 195 50 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20804-PA 453 GI20804-PA 9..453 1..443 1941 86.2 Plus
Dmoj\GI22014-PA 1479 GI22014-PA 1403..1478 362..440 205 46.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10151-PA 459 GL10151-PA 18..459 1..443 2184 91.9 Plus
Dper\GL13703-PA 1446 GL13703-PA 1370..1445 362..440 205 46.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21760-PB 456 GA21760-PB 15..456 1..443 2178 91.9 Plus
Dpse\GA18988-PA 1470 GA18988-PA 1394..1469 362..440 205 46.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15805-PA 443 GM15805-PA 1..443 1..443 2384 99.5 Plus
Dsec\GM16345-PA 1401 GM16345-PA 1325..1400 362..440 206 46.8 Plus
Dsec\GM23252-PA 77 GM23252-PA 1..71 362..435 200 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11564-PA 443 GD11564-PA 1..443 1..443 2398 100 Plus
Dsim\GD21342-PA 1157 GD21342-PA 1081..1156 362..440 207 46.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20537-PA 455 GJ20537-PA 12..455 1..443 1929 85.7 Plus
Dvir\GJ10464-PA 1458 GJ10464-PA 1382..1457 362..440 205 46.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20975-PA 451 GK20975-PA 9..451 1..443 2081 88.2 Plus
Dwil\GK11759-PA 1483 GK11759-PA 1407..1482 362..440 205 46.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12168-PA 443 GE12168-PA 1..443 1..443 2381 99.1 Plus
Dyak\GE23747-PA 1362 GE23747-PA 1286..1361 362..440 206 46.8 Plus