BDGP Sequence Production Resources |
Search the DGRC for GH04664
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 46 |
Well: | 64 |
Vector: | pOT2 |
Associated Gene/Transcript | nSyb-RA |
Protein status: | GH04664.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1113 |
Gene | Date | Evidence |
---|---|---|
CG17248 | 2001-01-01 | Release 2 assignment |
CG17248 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17248 | 2003-02-17 | Blastp of sequenced clone |
n-syb | 2008-04-29 | Release 5.5 accounting |
n-syb | 2008-08-15 | Release 5.9 accounting |
n-syb | 2008-12-18 | 5.12 accounting |
1113 bp (1113 high quality bases) assembled on 2003-02-17
GenBank Submission: AY069045
> GH04664.complete AAAACGTCCAGCAGTTCCAGCGCTGAGCCAGAAAATTCCTGCGAAAGGCT GTCGTGGCAAGTGTTACCCGCACACATACACATCATCCAGATCCAGCCAA TCCCCCCGTGGAGTGGAGTGAATTTTCATTGACGACGGGGCGAAAAAGCT CTGGCGGAAGAGCGACAGAGAGAGAGAGAAACAGAGAGAGAGAGAGAGAA GCGGCACTGAGAGCGCAACCCTCTAGAACAAAAACAACGAAACAGAGTTC AGCTGCACCACCACCCACTACCTACACCACCAACGCCACCACCGCCCACT GACCATCCCACATCCCGACCTGCGCCAGTGGAAGACAGTGAAAGAGGCCA AGTGCATCGTGCATAGAGTACCTTCATCCTAATCATCGACAGCCGAATTC GCTGAGGCCACCAGAGCACCACCAGCCAAACCACAGAAGCAACCACACAG CCACCAGAGCCATGGCGGACGCTGCACCAGCTGGCGATGCACCACCCAAT GCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGCGGACC ACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGACGCAGG CGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGAAGGTG CTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGATGCCTT GCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAAGAGGA AATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGATTGGC CTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGCGGGGA GCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACCGCCGC CGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATGCGGCA GGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGCGATCA CGGCGGCGTGTAAGCAATCCCGCTGCCAGGACGAAAGTTTCTCGATTAGT GTGCTCCTTCAGCGGGCGAAAACAAAGCAGAGAAGACAAAAAAAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
n-syb.f | 1639 | n-syb.f | 38..1133 | 1..1096 | 5465 | 99.9 | Plus |
n-syb.j | 3130 | n-syb.j | 38..500 | 1..463 | 2315 | 100 | Plus |
n-syb.a | 1578 | n-syb.a | 38..500 | 1..463 | 2315 | 100 | Plus |
n-syb.j | 3130 | n-syb.j | 574..940 | 464..830 | 1820 | 99.7 | Plus |
n-syb.a | 1578 | n-syb.a | 574..940 | 464..830 | 1820 | 99.7 | Plus |
n-syb.j | 3130 | n-syb.j | 1034..1304 | 826..1096 | 1340 | 99.6 | Plus |
n-syb.a | 1578 | n-syb.a | 1034..1304 | 826..1096 | 1340 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 1636413..1636871 | 464..9 | 2200 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 1631789..1632044 | 1087..826 | 1170 | 97.3 | Minus |
chr3L | 24539361 | chr3L | 1635128..1635280 | 616..464 | 765 | 100 | Minus |
chr3L | 24539361 | chr3L | 1634897..1635057 | 773..613 | 760 | 98.1 | Minus |
chr2R | 21145070 | chr2R | 6138435..6138646 | 796..585 | 310 | 76.4 | Minus |
chr3L | 24539361 | chr3L | 1634778..1634835 | 829..772 | 275 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 1636817..1637272 | 464..9 | 2280 | 100 | Minus |
3L | 28110227 | 3L | 1632184..1632454 | 1096..826 | 1340 | 99.6 | Minus |
3L | 28110227 | 3L | 1635301..1635461 | 773..613 | 805 | 100 | Minus |
3L | 28110227 | 3L | 1635532..1635684 | 616..464 | 765 | 100 | Minus |
2R | 25286936 | 2R | 10250908..10251119 | 796..585 | 295 | 75.9 | Minus |
3L | 28110227 | 3L | 1635182..1635239 | 829..772 | 275 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 1636817..1637272 | 464..9 | 2280 | 100 | Minus |
3L | 28103327 | 3L | 1632184..1632454 | 1096..826 | 1340 | 99.6 | Minus |
3L | 28103327 | 3L | 1635301..1635461 | 773..613 | 805 | 100 | Minus |
3L | 28103327 | 3L | 1635532..1635684 | 616..464 | 765 | 100 | Minus |
2R | 25260384 | 2R | 10252157..10252318 | 746..585 | 285 | 78.3 | Minus |
3L | 28103327 | 3L | 1635182..1635239 | 829..772 | 275 | 98.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1631789..1632044 | 826..1087 | 97 | <- | Minus |
chr3L | 1634782..1634833 | 774..825 | 100 | <- | Minus |
chr3L | 1634897..1635055 | 615..773 | 98 | <- | Minus |
chr3L | 1635130..1635280 | 464..614 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RC | 1..552 | 462..1013 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RF | 1..552 | 462..1013 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RA | 1..552 | 462..1013 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RC | 1..552 | 462..1013 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nSyb-RA | 1..552 | 462..1013 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RA | 38..1121 | 1..1087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RF | 38..1124 | 1..1087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RF | 23..1109 | 1..1087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RA | 38..1121 | 1..1087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nSyb-RF | 23..1109 | 1..1087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1632193..1632454 | 826..1087 | 100 | <- | Minus |
3L | 1635186..1635237 | 774..825 | 100 | <- | Minus |
3L | 1635301..1635459 | 615..773 | 100 | <- | Minus |
3L | 1635534..1635684 | 464..614 | 100 | <- | Minus |
3L | 1636818..1637272 | 9..463 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1632193..1632454 | 826..1087 | 100 | <- | Minus |
3L | 1635186..1635237 | 774..825 | 100 | <- | Minus |
3L | 1635301..1635459 | 615..773 | 100 | <- | Minus |
3L | 1635534..1635684 | 464..614 | 100 | <- | Minus |
3L | 1636818..1637272 | 9..463 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1632193..1632454 | 826..1087 | 100 | <- | Minus |
3L | 1635186..1635237 | 774..825 | 100 | <- | Minus |
3L | 1635301..1635459 | 615..773 | 100 | <- | Minus |
3L | 1635534..1635684 | 464..614 | 100 | <- | Minus |
3L | 1636818..1637272 | 9..463 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1635186..1635237 | 774..825 | 100 | <- | Minus |
arm_3L | 1635301..1635459 | 615..773 | 100 | <- | Minus |
arm_3L | 1635534..1635684 | 464..614 | 100 | <- | Minus |
arm_3L | 1632193..1632454 | 826..1087 | 100 | <- | Minus |
arm_3L | 1636818..1637272 | 9..463 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1635534..1635684 | 464..614 | 100 | <- | Minus |
3L | 1632193..1632454 | 826..1087 | 100 | <- | Minus |
3L | 1635186..1635237 | 774..825 | 100 | <- | Minus |
3L | 1635301..1635459 | 615..773 | 100 | <- | Minus |
3L | 1636818..1637272 | 9..463 | 100 | Minus |
Translation from 461 to 1012
> GH04664.hyp MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVD EVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWL QNLKMMIIMGVIGLVVVGIIANKLGLIGGEQPPQYQYPPQYMQPPPPPPQ QPAGGQSSLVDAAGAGDGAGAGGSAGAGDHGGV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nSyb-PF | 183 | CG17248-PF | 1..183 | 1..183 | 951 | 100 | Plus |
nSyb-PA | 183 | CG17248-PA | 1..183 | 1..183 | 951 | 100 | Plus |
nSyb-PG | 192 | CG17248-PG | 11..192 | 2..183 | 946 | 100 | Plus |
nSyb-PE | 192 | CG17248-PE | 11..192 | 2..183 | 946 | 100 | Plus |
nSyb-PJ | 206 | CG17248-PJ | 1..158 | 1..150 | 626 | 84.2 | Plus |
Translation from 461 to 1012
> GH04664.pep MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVD EVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWL QNLKMMIIMGVIGLVVVGIIANKLGLIGGEQPPQYQYPPQYMQPPPPPPQ QPAGGQSSLVDAAGAGDGAGAGGSAGAGDHGGV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24019-PA | 190 | GF24019-PA | 24..171 | 15..161 | 602 | 98 | Plus |
Dana\GF12131-PA | 132 | GF12131-PA | 35..126 | 29..120 | 337 | 72.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14581-PA | 217 | GG14581-PA | 24..217 | 15..183 | 622 | 81.3 | Plus |
Dere\GG25222-PA | 153 | GG25222-PA | 23..127 | 11..120 | 330 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15523-PA | 190 | GH15523-PA | 11..189 | 2..182 | 634 | 79.3 | Plus |
Dgri\GH20114-PA | 126 | GH20114-PA | 6..110 | 14..110 | 299 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nSyb-PF | 183 | CG17248-PF | 1..183 | 1..183 | 951 | 100 | Plus |
nSyb-PA | 183 | CG17248-PA | 1..183 | 1..183 | 951 | 100 | Plus |
nSyb-PG | 192 | CG17248-PG | 11..192 | 2..183 | 946 | 100 | Plus |
nSyb-PE | 192 | CG17248-PE | 11..192 | 2..183 | 946 | 100 | Plus |
nSyb-PJ | 206 | CG17248-PJ | 1..158 | 1..150 | 626 | 84.2 | Plus |
nSyb-PK | 125 | CG17248-PK | 1..122 | 1..122 | 609 | 99.2 | Plus |
nSyb-PI | 135 | CG17248-PI | 11..132 | 2..123 | 608 | 99.2 | Plus |
nSyb-PH | 135 | CG17248-PH | 11..132 | 2..123 | 608 | 99.2 | Plus |
Syb-PB | 132 | CG12210-PB | 23..126 | 11..120 | 324 | 64.5 | Plus |
Syb-PC | 152 | CG12210-PC | 23..126 | 11..120 | 324 | 64.5 | Plus |
Syb-PD | 109 | CG12210-PD | 11..103 | 28..120 | 320 | 71 | Plus |
Syb-PE | 129 | CG12210-PE | 11..103 | 28..120 | 320 | 71 | Plus |
Syb-PA | 129 | CG12210-PA | 11..103 | 28..120 | 320 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16800-PA | 192 | GI16800-PA | 24..170 | 15..160 | 569 | 87.1 | Plus |
Dmoj\GI20208-PA | 152 | GI20208-PA | 23..117 | 11..110 | 326 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20732-PA | 189 | GL20732-PA | 31..171 | 23..161 | 559 | 92.9 | Plus |
Dper\GL10482-PA | 131 | GL10482-PA | 44..125 | 39..120 | 318 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28300-PA | 189 | GA28300-PA | 31..171 | 23..161 | 559 | 92.9 | Plus |
Dpse\GA11480-PA | 131 | GA11480-PA | 44..125 | 39..120 | 318 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14195-PA | 221 | GM14195-PA | 24..198 | 15..160 | 562 | 82.9 | Plus |
Dsec\GM20541-PA | 152 | GM20541-PA | 23..126 | 11..120 | 339 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17610-PA | 213 | GD17610-PA | 24..146 | 15..137 | 552 | 87.8 | Plus |
Dsim\GD25998-PA | 152 | GD25998-PA | 23..126 | 11..120 | 338 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12544-PA | 189 | GJ12544-PA | 24..171 | 15..161 | 569 | 89.2 | Plus |
Dvir\GJ20156-PA | 152 | GJ20156-PA | 44..117 | 37..110 | 306 | 82.4 | Plus |