Clone GH04664 Report

Search the DGRC for GH04664

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:64
Vector:pOT2
Associated Gene/TranscriptnSyb-RA
Protein status:GH04664.pep: gold
Preliminary Size:1300
Sequenced Size:1113

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17248 2001-01-01 Release 2 assignment
CG17248 2003-01-01 Sim4 clustering to Release 3
CG17248 2003-02-17 Blastp of sequenced clone
n-syb 2008-04-29 Release 5.5 accounting
n-syb 2008-08-15 Release 5.9 accounting
n-syb 2008-12-18 5.12 accounting

Clone Sequence Records

GH04664.complete Sequence

1113 bp (1113 high quality bases) assembled on 2003-02-17

GenBank Submission: AY069045

> GH04664.complete
AAAACGTCCAGCAGTTCCAGCGCTGAGCCAGAAAATTCCTGCGAAAGGCT
GTCGTGGCAAGTGTTACCCGCACACATACACATCATCCAGATCCAGCCAA
TCCCCCCGTGGAGTGGAGTGAATTTTCATTGACGACGGGGCGAAAAAGCT
CTGGCGGAAGAGCGACAGAGAGAGAGAGAAACAGAGAGAGAGAGAGAGAA
GCGGCACTGAGAGCGCAACCCTCTAGAACAAAAACAACGAAACAGAGTTC
AGCTGCACCACCACCCACTACCTACACCACCAACGCCACCACCGCCCACT
GACCATCCCACATCCCGACCTGCGCCAGTGGAAGACAGTGAAAGAGGCCA
AGTGCATCGTGCATAGAGTACCTTCATCCTAATCATCGACAGCCGAATTC
GCTGAGGCCACCAGAGCACCACCAGCCAAACCACAGAAGCAACCACACAG
CCACCAGAGCCATGGCGGACGCTGCACCAGCTGGCGATGCACCACCCAAT
GCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGCGGACC
ACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGACGCAGG
CGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGAAGGTG
CTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGATGCCTT
GCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAAGAGGA
AATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGATTGGC
CTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGCGGGGA
GCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACCGCCGC
CGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATGCGGCA
GGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGCGATCA
CGGCGGCGTGTAAGCAATCCCGCTGCCAGGACGAAAGTTTCTCGATTAGT
GTGCTCCTTCAGCGGGCGAAAACAAAGCAGAGAAGACAAAAAAAAAAAAA
AAAAAAAAAAAAA

GH04664.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
n-syb.f 1639 n-syb.f 38..1133 1..1096 5465 99.9 Plus
n-syb.j 3130 n-syb.j 38..500 1..463 2315 100 Plus
n-syb.a 1578 n-syb.a 38..500 1..463 2315 100 Plus
n-syb.j 3130 n-syb.j 574..940 464..830 1820 99.7 Plus
n-syb.a 1578 n-syb.a 574..940 464..830 1820 99.7 Plus
n-syb.j 3130 n-syb.j 1034..1304 826..1096 1340 99.6 Plus
n-syb.a 1578 n-syb.a 1034..1304 826..1096 1340 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1636413..1636871 464..9 2200 99.1 Minus
chr3L 24539361 chr3L 1631789..1632044 1087..826 1170 97.3 Minus
chr3L 24539361 chr3L 1635128..1635280 616..464 765 100 Minus
chr3L 24539361 chr3L 1634897..1635057 773..613 760 98.1 Minus
chr2R 21145070 chr2R 6138435..6138646 796..585 310 76.4 Minus
chr3L 24539361 chr3L 1634778..1634835 829..772 275 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1636817..1637272 464..9 2280 100 Minus
3L 28110227 3L 1632184..1632454 1096..826 1340 99.6 Minus
3L 28110227 3L 1635301..1635461 773..613 805 100 Minus
3L 28110227 3L 1635532..1635684 616..464 765 100 Minus
2R 25286936 2R 10250908..10251119 796..585 295 75.9 Minus
3L 28110227 3L 1635182..1635239 829..772 275 98.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1636817..1637272 464..9 2280 100 Minus
3L 28103327 3L 1632184..1632454 1096..826 1340 99.6 Minus
3L 28103327 3L 1635301..1635461 773..613 805 100 Minus
3L 28103327 3L 1635532..1635684 616..464 765 100 Minus
2R 25260384 2R 10252157..10252318 746..585 285 78.3 Minus
3L 28103327 3L 1635182..1635239 829..772 275 98.2 Minus
Blast to na_te.dros performed on 2019-03-15 12:45:26 has no hits.

GH04664.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:46:12 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1631789..1632044 826..1087 97 <- Minus
chr3L 1634782..1634833 774..825 100 <- Minus
chr3L 1634897..1635055 615..773 98 <- Minus
chr3L 1635130..1635280 464..614 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:14:56 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RC 1..552 462..1013 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:27 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RF 1..552 462..1013 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:49:37 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 1..552 462..1013 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:40 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RC 1..552 462..1013 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:09:26 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
nSyb-RA 1..552 462..1013 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:03:33 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 38..1121 1..1087 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:27 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RF 38..1124 1..1087 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:49:37 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RF 23..1109 1..1087 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:40 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 38..1121 1..1087 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:09:26 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
nSyb-RF 23..1109 1..1087 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:12 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1632193..1632454 826..1087 100 <- Minus
3L 1635186..1635237 774..825 100 <- Minus
3L 1635301..1635459 615..773 100 <- Minus
3L 1635534..1635684 464..614 100 <- Minus
3L 1636818..1637272 9..463 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:12 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1632193..1632454 826..1087 100 <- Minus
3L 1635186..1635237 774..825 100 <- Minus
3L 1635301..1635459 615..773 100 <- Minus
3L 1635534..1635684 464..614 100 <- Minus
3L 1636818..1637272 9..463 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:12 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1632193..1632454 826..1087 100 <- Minus
3L 1635186..1635237 774..825 100 <- Minus
3L 1635301..1635459 615..773 100 <- Minus
3L 1635534..1635684 464..614 100 <- Minus
3L 1636818..1637272 9..463 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:49:37 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1635186..1635237 774..825 100 <- Minus
arm_3L 1635301..1635459 615..773 100 <- Minus
arm_3L 1635534..1635684 464..614 100 <- Minus
arm_3L 1632193..1632454 826..1087 100 <- Minus
arm_3L 1636818..1637272 9..463 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:12:15 Download gff for GH04664.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1635534..1635684 464..614 100 <- Minus
3L 1632193..1632454 826..1087 100 <- Minus
3L 1635186..1635237 774..825 100 <- Minus
3L 1635301..1635459 615..773 100 <- Minus
3L 1636818..1637272 9..463 100   Minus

GH04664.hyp Sequence

Translation from 461 to 1012

> GH04664.hyp
MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVD
EVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWL
QNLKMMIIMGVIGLVVVGIIANKLGLIGGEQPPQYQYPPQYMQPPPPPPQ
QPAGGQSSLVDAAGAGDGAGAGGSAGAGDHGGV*

GH04664.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-PF 183 CG17248-PF 1..183 1..183 951 100 Plus
nSyb-PA 183 CG17248-PA 1..183 1..183 951 100 Plus
nSyb-PG 192 CG17248-PG 11..192 2..183 946 100 Plus
nSyb-PE 192 CG17248-PE 11..192 2..183 946 100 Plus
nSyb-PJ 206 CG17248-PJ 1..158 1..150 626 84.2 Plus

GH04664.pep Sequence

Translation from 461 to 1012

> GH04664.pep
MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVD
EVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWL
QNLKMMIIMGVIGLVVVGIIANKLGLIGGEQPPQYQYPPQYMQPPPPPPQ
QPAGGQSSLVDAAGAGDGAGAGGSAGAGDHGGV*

GH04664.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24019-PA 190 GF24019-PA 24..171 15..161 602 98 Plus
Dana\GF12131-PA 132 GF12131-PA 35..126 29..120 337 72.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14581-PA 217 GG14581-PA 24..217 15..183 622 81.3 Plus
Dere\GG25222-PA 153 GG25222-PA 23..127 11..120 330 64.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15523-PA 190 GH15523-PA 11..189 2..182 634 79.3 Plus
Dgri\GH20114-PA 126 GH20114-PA 6..110 14..110 299 65.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-PF 183 CG17248-PF 1..183 1..183 951 100 Plus
nSyb-PA 183 CG17248-PA 1..183 1..183 951 100 Plus
nSyb-PG 192 CG17248-PG 11..192 2..183 946 100 Plus
nSyb-PE 192 CG17248-PE 11..192 2..183 946 100 Plus
nSyb-PJ 206 CG17248-PJ 1..158 1..150 626 84.2 Plus
nSyb-PK 125 CG17248-PK 1..122 1..122 609 99.2 Plus
nSyb-PI 135 CG17248-PI 11..132 2..123 608 99.2 Plus
nSyb-PH 135 CG17248-PH 11..132 2..123 608 99.2 Plus
Syb-PB 132 CG12210-PB 23..126 11..120 324 64.5 Plus
Syb-PC 152 CG12210-PC 23..126 11..120 324 64.5 Plus
Syb-PD 109 CG12210-PD 11..103 28..120 320 71 Plus
Syb-PE 129 CG12210-PE 11..103 28..120 320 71 Plus
Syb-PA 129 CG12210-PA 11..103 28..120 320 71 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16800-PA 192 GI16800-PA 24..170 15..160 569 87.1 Plus
Dmoj\GI20208-PA 152 GI20208-PA 23..117 11..110 326 68 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20732-PA 189 GL20732-PA 31..171 23..161 559 92.9 Plus
Dper\GL10482-PA 131 GL10482-PA 44..125 39..120 318 76.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28300-PA 189 GA28300-PA 31..171 23..161 559 92.9 Plus
Dpse\GA11480-PA 131 GA11480-PA 44..125 39..120 318 76.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14195-PA 221 GM14195-PA 24..198 15..160 562 82.9 Plus
Dsec\GM20541-PA 152 GM20541-PA 23..126 11..120 339 64.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17610-PA 213 GD17610-PA 24..146 15..137 552 87.8 Plus
Dsim\GD25998-PA 152 GD25998-PA 23..126 11..120 338 64.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12544-PA 189 GJ12544-PA 24..171 15..161 569 89.2 Plus
Dvir\GJ20156-PA 152 GJ20156-PA 44..117 37..110 306 82.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23666-PA 190 GK23666-PA 11..139 2..130 640 97.7 Plus
Dwil\GK18016-PA 132 GK18016-PA 43..126 37..120 326 77.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20941-PA 223 GE20941-PA 24..198 15..160 560 82.3 Plus
Dyak\Syb-PA 153 GE21677-PA 44..127 37..120 324 76.2 Plus