Clone GH04680 Report

Search the DGRC for GH04680

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:80
Vector:pOT2
Associated Gene/TranscriptCG5150-RA
Protein status:GH04680.pep: gold
Preliminary Size:1858
Sequenced Size:1792

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5150 2001-01-01 Release 2 assignment
CG5150 2001-10-10 Blastp of sequenced clone
CG5150 2003-01-01 Sim4 clustering to Release 3
CG5150 2008-04-29 Release 5.5 accounting
CG5150 2008-08-15 Release 5.9 accounting
CG5150 2008-12-18 5.12 accounting

Clone Sequence Records

GH04680.complete Sequence

1792 bp (1792 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060626

> GH04680.complete
CACGGTGAAAGTATCTCGAAAATGCTGAGTCTTAAGTTCTGGATTCGCCT
CGGTCTGCTGACCGTCGTTTGGGGTGCAGCGGTTCCTGGAAGAGCCCCCG
TGGACGAGGAGCGAATGCATCCACATCTGCCCACTAGTCCCAGGCTGCGT
ACGATTTCCGGCGAGGAAACCCAGGAGTTCTGGCACTCGGCCAGCAAAAA
ACTCATCCGCGAAAAGTTGGAGTTCGTGAGGAACACCAAGAAGGCCAAGA
ACATTATACTGTTTTTGGGCGATGGCATGGGACTGGCTACTCTGGCTGCT
GCCAGGAGTTACATTGGAGGCGAGGAGTTGAAGCTCTCCTTCGAAGAATT
CCCCTTTACCGGACTATCGAAAACCTATTCGGTGGACAAAATAGTCCCCG
ATAGCGCCTGTACCTCAACCTCATATCTCTGCGGAGTGAAGGCGAACTAC
GGAACCATCGGCGTAAATGCGCATGTGAAGCGAGGCGACTGTGCGGCGAT
GGCCAATGAAACGAACCATGTCTTCTCCCTGGGTAAATGGGCCATGGATG
CGGGCAAAGCTGCTGGACTAGTGACCACCACCCGAGTGACCCACGCCTCG
CCATCCGGAGTCTACGCCCATGTCGCCGATCGTGAATGGGAGAATAACGC
TGTTCTCGAGGAGGCCTGCGGTGAGTTGTCAGATGGACTCCAGGACATAG
CTGTCCAGTTGATTCACGGCGAGGTGGGCAGCAAACTCAAGGTCATGCTG
GGTGGAGGCAAGCGAAGCTTCTATAGTCCGGAACACTACGACAAGGGCCG
GCGCACTGATGGTCGTAATCTCGTCGAGGAATTCGAAGCCTTGGACGCGG
GCAACACCTTTGTGAAAACGCAGAAGAAGCTGCTCAATGTGAACGCCACT
GAAACCGGTAGATTGTTGGGCCTGTTCAGCAAGAGCCACATGCACTATCA
TCTGGAGCAACTGGCCGATCCGGACAACAATGAGCCCACCTTGGAGGAGA
TGACACAGAAGGCCATTGAAGTGCTGGAAACCGAAGAGCAGGGATACTTC
CTTTTCGTTGAAGGAGGTAAAATCGACATCAGCCACCACGAAACAATGGC
ACGAATTGCTTTGGATGAGACCGCTGAACTCTCGAAGGCGGTGAAGAAGG
CTAGGGAGATGACCAACCCGGAGGAGACCCTCATTGTGGTGACCTCGGAT
CACTCGCACACCTTCAGCGTTTCGGGATATCAACCACGAGGAAGCGACAT
CTTTGGAGCTGCCAAGGCGAATGGCAAGGATGGCAAACCGTATCTGGCCT
TGAGCTATGCCAACGGCAAGAGTTTCCAGGACTACTACAATACGGAGACC
CACGAGCGCGTGGATCCCACCAGTCTGCCCACAATCGGAGACTTCGATCA
GCTCTTCCCCGCGATGGTGCCCCTTGAATCGGAGACCCATGGCGGCGAGG
ATGTGGGTGTCTTCGCCTCGGGACCCTGGGCACATCTCTTCACTGGCGTC
TACGAACAGAACACCATTCCTCACATGATGGCATTCGCTGCCTGTGTGGG
CGATGGACTAACCGCTTGCGATTAGGAATCCCAATCCGGCGATGATTGAC
GGACAGAAGGACTCTTAATTAGCGCATCCACTAGACGATTCTCACGTACG
CTTTATCGTTTTAAATGAATACTCAACATTTGACAGGTGCTGGAACACGC
GGCTCTCGAGAAAAGAAATTCGATCGGGGATTACTAAAATCAATACTTCA
ATAAACGTTTTCCTATCAATGTTAAAAAAAAAAAAAAAAAAA

GH04680.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-RA 1807 CG5150-RA 20..1798 1..1779 8895 100 Plus
CG10827-RA 1930 CG10827-RA 707..813 538..644 220 80.3 Plus
CG10827-RA 1930 CG10827-RA 1601..1710 1444..1553 220 80 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5588137..5589909 1..1773 8835 99.9 Plus
chr3R 27901430 chr3R 16829132..16829241 1553..1444 220 80 Minus
chr3R 27901430 chr3R 16830186..16830292 644..538 220 80.4 Minus
chr3L 24539361 chr3L 5585860..5585923 1212..1149 185 85.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5595565..5597343 1..1779 8895 100 Plus
3R 32079331 3R 21005271..21005380 1553..1444 220 80 Minus
3R 32079331 3R 21006325..21006431 644..538 220 80.4 Minus
3L 28110227 3L 5593288..5593351 1212..1149 185 85.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5588665..5590443 1..1779 8895 100 Plus
3R 31820162 3R 20747156..20747262 644..538 220 80.3 Minus
3R 31820162 3R 20746102..20746211 1553..1444 220 80 Minus
Blast to na_te.dros performed on 2019-03-16 14:24:48 has no hits.

GH04680.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:25:46 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5588137..5589909 1..1773 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:14:59 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 1..1554 22..1575 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:41 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 1..1554 22..1575 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:54 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 1..1554 22..1575 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:26 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 1..1554 22..1575 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:32:15 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 1..1554 22..1575 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:21:05 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 20..1792 1..1773 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:41 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 20..1792 1..1773 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:54 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 24..1796 1..1773 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:26 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 20..1792 1..1773 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:15 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 24..1796 1..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:46 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5595565..5597337 1..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:46 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5595565..5597337 1..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:46 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5595565..5597337 1..1773 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:54 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5588665..5590437 1..1773 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:42 Download gff for GH04680.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5588665..5590437 1..1773 100   Plus

GH04680.hyp Sequence

Translation from 1 to 1574

> GH04680.hyp
HGESISKMLSLKFWIRLGLLTVVWGAAVPGRAPVDEERMHPHLPTSPRLR
TISGEETQEFWHSASKKLIREKLEFVRNTKKAKNIILFLGDGMGLATLAA
ARSYIGGEELKLSFEEFPFTGLSKTYSVDKIVPDSACTSTSYLCGVKANY
GTIGVNAHVKRGDCAAMANETNHVFSLGKWAMDAGKAAGLVTTTRVTHAS
PSGVYAHVADREWENNAVLEEACGELSDGLQDIAVQLIHGEVGSKLKVML
GGGKRSFYSPEHYDKGRRTDGRNLVEEFEALDAGNTFVKTQKKLLNVNAT
ETGRLLGLFSKSHMHYHLEQLADPDNNEPTLEEMTQKAIEVLETEEQGYF
LFVEGGKIDISHHETMARIALDETAELSKAVKKAREMTNPEETLIVVTSD
HSHTFSVSGYQPRGSDIFGAAKANGKDGKPYLALSYANGKSFQDYYNTET
HERVDPTSLPTIGDFDQLFPAMVPLESETHGGEDVGVFASGPWAHLFTGV
YEQNTIPHMMAFAACVGDGLTACD*

GH04680.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-PB 517 CG5150-PB 1..517 8..524 2710 100 Plus
CG5150-PA 517 CG5150-PA 1..517 8..524 2710 100 Plus
CG10827-PA 522 CG10827-PA 20..521 24..523 1516 56.3 Plus
CG10592-PA 524 CG10592-PA 27..514 36..517 1124 48.1 Plus
CG8147-PA 546 CG8147-PA 61..532 53..518 1118 50 Plus

GH04680.pep Sequence

Translation from 21 to 1574

> GH04680.pep
MLSLKFWIRLGLLTVVWGAAVPGRAPVDEERMHPHLPTSPRLRTISGEET
QEFWHSASKKLIREKLEFVRNTKKAKNIILFLGDGMGLATLAAARSYIGG
EELKLSFEEFPFTGLSKTYSVDKIVPDSACTSTSYLCGVKANYGTIGVNA
HVKRGDCAAMANETNHVFSLGKWAMDAGKAAGLVTTTRVTHASPSGVYAH
VADREWENNAVLEEACGELSDGLQDIAVQLIHGEVGSKLKVMLGGGKRSF
YSPEHYDKGRRTDGRNLVEEFEALDAGNTFVKTQKKLLNVNATETGRLLG
LFSKSHMHYHLEQLADPDNNEPTLEEMTQKAIEVLETEEQGYFLFVEGGK
IDISHHETMARIALDETAELSKAVKKAREMTNPEETLIVVTSDHSHTFSV
SGYQPRGSDIFGAAKANGKDGKPYLALSYANGKSFQDYYNTETHERVDPT
SLPTIGDFDQLFPAMVPLESETHGGEDVGVFASGPWAHLFTGVYEQNTIP
HMMAFAACVGDGLTACD*

GH04680.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23984-PA 517 GF23984-PA 1..517 1..517 2638 93.4 Plus
Dana\GF17005-PA 524 GF17005-PA 11..522 8..516 1487 54.3 Plus
Dana\GF17006-PA 464 GF17006-PA 5..462 2..516 1209 47.1 Plus
Dana\GF17216-PA 543 GF17216-PA 5..535 4..517 1165 47.3 Plus
Dana\GF23560-PA 523 GF23560-PA 1..514 1..517 1164 46.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15276-PA 517 GG15276-PA 1..517 1..517 2676 96.3 Plus
Dere\GG15026-PA 522 GG15026-PA 20..521 17..516 1542 56.9 Plus
Dere\GG14123-PA 524 GG14123-PA 27..514 29..510 1158 48.5 Plus
Dere\GG16809-PA 546 GG16809-PA 38..532 23..511 1134 48 Plus
Dere\GG13235-PA 529 GG13235-PA 31..514 42..517 1130 47.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15197-PA 525 GH15197-PA 19..525 15..517 2218 82.1 Plus
Dgri\GH19241-PA 526 GH19241-PA 36..521 32..516 1487 56.9 Plus
Dgri\GH18436-PA 542 GH18436-PA 8..532 10..516 1178 47.9 Plus
Dgri\GH15376-PA 523 GH15376-PA 29..511 42..517 1155 49.4 Plus
Dgri\GH16243-PA 525 GH16243-PA 16..515 10..510 1151 48.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Alp9-PB 517 CG5150-PB 1..517 1..517 2710 100 Plus
Alp9-PA 517 CG5150-PA 1..517 1..517 2710 100 Plus
Alp5-PA 522 CG10827-PA 20..521 17..516 1516 56.3 Plus
Alp10-PA 524 CG10592-PA 27..514 29..510 1124 48.1 Plus
phu-PA 546 CG8147-PA 61..532 46..511 1118 50 Plus
Alp1-PA 523 CG5656-PA 31..514 42..517 1110 47.7 Plus
Alp1-PB 530 CG5656-PB 31..521 42..517 1093 47 Plus
Alp6-PA 515 CG1809-PA 43..512 48..510 1041 46.5 Plus
Alp8-PB 533 CG3264-PB 59..532 48..517 992 44.1 Plus
Alp8-PA 533 CG3264-PA 59..532 48..517 992 44.1 Plus
Alp7-PA 543 CG3292-PA 65..540 48..517 967 44.6 Plus
Alp2-PA 538 CG3290-PA 60..531 48..516 955 42.6 Plus
Alp11-PA 483 CG8105-PA 42..474 54..517 838 41.5 Plus
Alp4-PA 596 CG1462-PA 52..541 49..510 823 38.9 Plus
Alp12-PE 596 CG16771-PE 109..579 51..510 786 38.5 Plus
Alp12-PD 596 CG16771-PD 109..579 51..510 786 38.5 Plus
Alp12-PC 596 CG16771-PC 109..579 51..510 786 38.5 Plus
Alp12-PB 596 CG16771-PB 109..579 51..510 786 38.5 Plus
Alp12-PA 596 CG16771-PA 109..579 51..510 786 38.5 Plus
Alp4-PB 502 CG1462-PB 1..447 86..510 747 39.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12135-PA 526 GI12135-PA 19..526 15..517 2095 78.2 Plus
Dmoj\GI22009-PA 526 GI22009-PA 9..520 8..516 1547 57.1 Plus
Dmoj\GI24012-PA 547 GI24012-PA 1..536 2..516 1167 45.8 Plus
Dmoj\GI13179-PA 525 GI13179-PA 23..516 22..510 1152 47.6 Plus
Dmoj\GI12980-PA 503 GI12980-PA 10..494 42..517 1136 48.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23248-PA 525 GL23248-PA 10..523 8..516 1586 57.9 Plus
Dper\GL12007-PA 538 GL12007-PA 16..528 12..510 1136 46.6 Plus
Dper\GL17170-PA 520 GL17170-PA 4..513 9..510 1113 46.8 Plus
Dper\GL12298-PA 214 GL12298-PA 1..209 307..516 1017 89.5 Plus
Dper\GL16939-PA 542 GL16939-PA 64..539 48..517 993 44.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18693-PA 522 GA18693-PA 3..517 2..516 2396 86.2 Plus
Dpse\GA10582-PA 525 GA10582-PA 10..523 8..516 1588 57.9 Plus
Dpse\GA24639-PA 521 GA24639-PA 29..512 42..517 1174 49.8 Plus
Dpse\GA20850-PA 543 GA20850-PA 1..527 8..509 1145 47.2 Plus
Dpse\GA10422-PA 537 GA10422-PA 16..528 12..510 1132 46.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14710-PA 517 GM14710-PA 1..517 1..517 2710 97.5 Plus
Dsec\GM15118-PA 522 GM15118-PA 20..521 17..516 1535 56.9 Plus
Dsec\GM13909-PA 524 GM13909-PA 27..514 29..510 1146 48.3 Plus
Dsec\GM23808-PA 546 GM23808-PA 38..532 23..511 1145 48.2 Plus
Dsec\GM22140-PA 523 GM22140-PA 31..514 42..517 1143 48.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13892-PA 511 GD13892-PA 1..511 1..517 2676 96.9 Plus
Dsim\GD20021-PA 521 GD20021-PA 20..520 17..516 1467 55.5 Plus
Dsim\GD13186-PA 524 GD13186-PA 27..514 29..510 1147 48.3 Plus
Dsim\GD18617-PA 546 GD18617-PA 38..532 23..511 1142 48.2 Plus
Dsim\GD25137-PA 533 GD25137-PA 63..532 52..517 999 44.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13410-PA 526 GJ13410-PA 10..526 6..517 2162 79 Plus
Dvir\GJ10462-PA 520 GJ10462-PA 9..517 8..516 1549 57.4 Plus
Dvir\GJ23643-PA 545 GJ23643-PA 1..535 2..516 1166 46.1 Plus
Dvir\GJ11955-PA 528 GJ11955-PA 34..519 29..510 1156 49.1 Plus
Dvir\GJ13123-PA 521 GJ13123-PA 30..512 42..517 1149 48.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17300-PA 524 GK17300-PA 22..524 19..517 2172 81.9 Plus
Dwil\GK11139-PA 529 GK11139-PA 39..521 32..516 1435 54.9 Plus
Dwil\GK10963-PA 547 GK10963-PA 61..537 48..516 1190 50.1 Plus
Dwil\GK16879-PA 530 GK16879-PA 34..521 31..510 1141 48.3 Plus
Dwil\GK16996-PA 534 GK16996-PA 46..525 46..517 1138 48.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21498-PA 517 GE21498-PA 1..517 1..517 2673 95.9 Plus
Dyak\GE25027-PA 522 GE25027-PA 20..521 17..516 1522 56.4 Plus
Dyak\GE20547-PA 524 GE20547-PA 22..514 26..510 1144 47.8 Plus
Dyak\GE25953-PA 548 GE25953-PA 65..534 48..511 1141 49.3 Plus
Dyak\GE22974-PA 523 GE22974-PA 31..514 42..517 1134 47.6 Plus