Clone GH04687 Report

Search the DGRC for GH04687

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:87
Vector:pOT2
Associated Gene/TranscriptCG33671-RA
Protein status:GH04687.pep: gold
Preliminary Size:2200
Sequenced Size:1989

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16804 2001-01-01 Release 2 assignment
CG33009 2001-10-10 Blastp of sequenced clone
CG33009 2003-01-01 Sim4 clustering to Release 3
CG33671 2008-04-29 Release 5.5 accounting
CG33671 2008-08-15 Release 5.9 accounting
CG33672 2008-08-15 Release 5.9 accounting
CG33671 2008-12-18 5.12 accounting
CG33672 2008-12-18 5.12 accounting

Clone Sequence Records

GH04687.complete Sequence

1989 bp (1989 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060627

> GH04687.complete
CACACAACCACTCCATCACCTCGTTTCGTTTGAAAAAAAAACCATCCAAA
ATGAGTAAATACGACTCAAAGTACCTCGAGGAGAAGCTCAAACGGGAACT
GCAGACGGAGTACGTGAGTGTTACGGACGAATCAGACGGCTGTGGCGGCA
AGTTCAGCGCCGTAATCGTATCGCCAGCCTTCAGCGGCAAGACCCTTCTC
CAGAAGCATAGATTAGTTAACTCAACGCTTGCCGAAGAACTGAAAGAAAT
CCATGCATTCTCCCAGAAATCCTACACACCCGAAGAGTGGGAGAAAGTGA
AAGCCCAATAGTAGTACCGAATAAAAAAAAACCAACAACACACATACATA
TACACGAGCGATACAACAACAGCAAACACTAGCCGCAAAAACCTGTTGTT
CGTTTTGCTGATGGTTGCGCTTTCCGATCGAAGAGACGAACAAGCCGAAA
AACGCCAGTCGCACAAAGAAAGTGAAAGGGAAAGCACAGGAATCGGCAGC
CAGAAATAGGAGTTACCGAATAAACAACGCAAATGATCCACTAAATGCAT
AAGTTACATAAAGAAATACAGCCATAAAAGTTTAACTACTTGTCGCAGGT
CGTCCACTCGAAAGGCATTAGCATTACAATTCGAAACAGCTGATAAACCG
ATAAAGCCATAGCCAAACGGAATACAGAACACACAATACACGGAGATCAT
CAAGAACAATGCTCAAGTTCCAGGTCCATTCTCCGGGCAAGGTCATACTC
CATGGCGAACACGCCGTGGTCTATCATCGTCCCGCCCTCGCCGCCGTAGT
GGGTTTGGGCACTACTCTGAGATTTCGGCAGCTGGAGGACAGCCAGGTGG
CAAGTTTTCAACTGGAGGCCCTTAACTGCACACTGGAGATCCAGTTGCCG
GAGTTCAATGGATTTTTGGCTGAATTTAGGAGTAAATACCCATCAGATAG
CACGGCCAATCTGTTGGAAGCCGTCCGCGCAGAGGTGTCCAAACAACTTG
AACGATCCGGAGGCAATGCACCGAAGCAGCACACCCAGCGGGCATTCATC
TCCATATACTATTTGCTGGCCGGCGCTGTACTCTCCGCACCCGGCGACAA
GAAACTGACGCTGCAAACCGGTTTCCAGGTGCAGGTAGACAGCCAGCTAA
CCGTGGGTGCGGGTTTGGGCAGTTCCGCCTCTTTCGGAGCAGCTTTGGCC
ACGACATTTCTCATTTTGGCCGGACACTTTGATAGAGACAGCTACTTGTC
GGAGGCAAACCAGGCGTTGATCTCGTCCTGGGCTTATGAATCGGAGCGTG
TTAATCATGGCACGCCCTCGGGTCTGGACAACACTGTATGCACCTACGGC
GGAATGTTGCGGTATGTCAAGGGCCAGGGCTTCCAGTCGCTGAAGATCCA
GAAACCACTAAACATCCTGCTGGTGGACAGTCGTGTGAGTCGCAGCACCG
CCGACATTGTGGCCAAGGTTCGTCATCTGGGAGATGCCTTTCCGCAGCTC
ATCGAGGCCATTTGGCAGGCTTGCGAGGAGCTTGTTGCCGCCGCCGTTCC
ACTCTACGAAAGCTTTGGCAACGCCCAAGACGATAGCTCGAAATTCGAGC
AACTTGAACGCCTGTTCCAGATCAACAATGATCTGTTGAAGGCTATCGGA
GTGTCGCACCCGAAACTGGAGCAAATCTTCACCATCGCTTTTAAGCGTGG
CTTCTTTTCAAAGCTGACGGGCGCCGGCGCAGGTGGCTATGTCATCGTTC
TGCTTCCAGAGAACTACGAGTGCAACGAGGTCTACTGGAAGCTTAAAGAG
GAGCTCGAATCGGCGGGTTTTGGTGTTCATGTTACGACTGCCGGCGGCGA
GGGATTGCGCGTTAGTTCGCTGGATGACTGATGCGGTTTCGTTTTGTATT
GCTATTGTATGTATTCGTGGTTTTGTTATAAATTAAAGAATAAAGATTTA
TACATGTATTTTGTACGGCAAAAAAAAAAAAAAAAAAAA

GH04687.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33672-RA 1999 CG33672-RA 28..1998 1..1971 9855 100 Plus
CG33671-RA 1999 CG33671-RA 28..1998 1..1971 9855 100 Plus
spt4-RA 2430 spt4-RA 553..2430 1971..94 9390 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8521424..8523390 1969..1 9750 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12634164..12636134 1971..1 9855 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12635363..12637333 1971..1 9855 100 Minus
Blast to na_te.dros performed 2019-03-16 00:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1084..1171 4..92 127 61.8 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1412..1481 314..381 119 67.1 Plus

GH04687.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:27:58 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8521424..8523390 1..1969 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:15:01 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..1173 709..1881 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:54 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..1173 709..1881 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:12:15 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..1173 709..1881 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:25:04 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..1173 709..1881 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:01:30 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..1173 709..1881 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:48 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33672-RA 28..1996 1..1969 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:54 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33672-RA 28..1996 1..1969 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:12:15 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33672-RA 8..1976 1..1969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:25:04 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33672-RA 28..1996 1..1969 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:01:30 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 8..1976 1..1969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:58 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12634166..12636134 1..1969 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:58 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12634166..12636134 1..1969 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:58 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12634166..12636134 1..1969 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:12:15 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8521671..8523639 1..1969 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:13 Download gff for GH04687.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12635365..12637333 1..1969 100   Minus

GH04687.hyp Sequence

Translation from 708 to 1880

> GH04687.hyp
MLKFQVHSPGKVILHGEHAVVYHRPALAAVVGLGTTLRFRQLEDSQVASF
QLEALNCTLEIQLPEFNGFLAEFRSKYPSDSTANLLEAVRAEVSKQLERS
GGNAPKQHTQRAFISIYYLLAGAVLSAPGDKKLTLQTGFQVQVDSQLTVG
AGLGSSASFGAALATTFLILAGHFDRDSYLSEANQALISSWAYESERVNH
GTPSGLDNTVCTYGGMLRYVKGQGFQSLKIQKPLNILLVDSRVSRSTADI
VAKVRHLGDAFPQLIEAIWQACEELVAAAVPLYESFGNAQDDSSKFEQLE
RLFQINNDLLKAIGVSHPKLEQIFTIAFKRGFFSKLTGAGAGGYVIVLLP
ENYECNEVYWKLKEELESAGFGVHVTTAGGEGLRVSSLDD*

GH04687.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33671-PB 390 CG33671-PB 1..390 1..390 1981 100 Plus
CG33671-PA 390 CG33671-PA 1..390 1..390 1981 100 Plus

GH04687.pep Sequence

Translation from 708 to 1880

> GH04687.pep
MLKFQVHSPGKVILHGEHAVVYHRPALAAVVGLGTTLRFRQLEDSQVASF
QLEALNCTLEIQLPEFNGFLAEFRSKYPSDSTANLLEAVRAEVSKQLERS
GGNAPKQHTQRAFISIYYLLAGAVLSAPGDKKLTLQTGFQVQVDSQLTVG
AGLGSSASFGAALATTFLILAGHFDRDSYLSEANQALISSWAYESERVNH
GTPSGLDNTVCTYGGMLRYVKGQGFQSLKIQKPLNILLVDSRVSRSTADI
VAKVRHLGDAFPQLIEAIWQACEELVAAAVPLYESFGNAQDDSSKFEQLE
RLFQINNDLLKAIGVSHPKLEQIFTIAFKRGFFSKLTGAGAGGYVIVLLP
ENYECNEVYWKLKEELESAGFGVHVTTAGGEGLRVSSLDD*

GH04687.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11467-PA 390 GF11467-PA 1..390 1..390 1890 91 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22565-PA 390 GG22565-PA 1..390 1..390 2017 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20706-PA 392 GH20706-PA 1..392 1..390 1679 84.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG33671-PB 390 CG33671-PB 1..390 1..390 1981 100 Plus
CG33671-PA 390 CG33671-PA 1..390 1..390 1981 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19067-PA 392 GI19067-PA 1..392 1..390 1578 77.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11191-PA 390 GL11191-PA 1..390 1..390 1749 88.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24635-PA 390 GA24635-PA 1..390 1..390 1743 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20348-PA 391 GM20348-PA 2..391 1..390 2024 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25827-PA 391 GD25827-PA 2..391 1..390 2040 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20038-PA 393 GJ20038-PA 1..393 1..390 1683 84.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20799-PA 392 GK20799-PA 1..392 1..390 1729 83.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13435-PA 390 GE13435-PA 1..390 1..390 1988 96.2 Plus