Clone GH04692 Report

Search the DGRC for GH04692

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:92
Vector:pOT2
Associated Gene/TranscriptCG32573-RA
Protein status:GH04692.pep: gold
Preliminary Size:1368
Sequenced Size:1310

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4524 2001-01-01 Release 2 assignment
CG32573 2002-03-19 Blastp of sequenced clone
CG32573 2003-01-01 Sim4 clustering to Release 3
CG32573 2008-04-29 Release 5.5 accounting
CG32573 2008-08-15 Release 5.9 accounting
CG32573 2008-12-18 5.12 accounting

Clone Sequence Records

GH04692.complete Sequence

1310 bp (1310 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094673

> GH04692.complete
AGATGATCCAGCTGCTCCAGTTGCTTCTATGTACTATTCCACTCGTTGTG
GGCGAGGTTCTGCCCCTGCAACTCGATTTGGACAACAGTCAAATTACCAT
ACGGCGAAGTGCCAGTCGCGATGACAAATTGCAGGTATTCCACAGCATCT
GGGGCGCCATTCGCTCCGACTTCGCCACCGATACGGACAAGGTGAAGGGC
CTGTACAGTCAGCTGGGCGGATATATTCGCGACGATGTGCAGTGCAGTAG
CGGCTCCACGGGTCGATCTGCCTGCGAGCTGCAGCAGGAGGTGCGACGCC
ACCTGCGGACCCTCATGGCCCAGCGGCTGGCCAATCTGTTGAACGCCGAG
GAGAGCATTCAGACATACGGTATGTACATAGCGGCCAGTGTGGAGCCCGC
CCTGGTCAGGGACATTCTGGTGCACGCCATCGAGGACGTGTACTTCCATC
GACCGCTGGAGAAGCTGGTGCAGCAGCTGGAGCAACTGTACGCGGATCGC
GACGAGGTCAGCTTTCGCACGATGATCGAGGCGCAATTGGCGCTCTTCTG
GCGCTATCAGGCCATGCAGGACAGCAGCGAGGCGTACCTGTTCAACGTCG
CGCACATGGTCAGCAAGATCCGGAGCCATCACATGTACGCCAGCGTCGAT
GCGGATCTCCAGAAGCGAGTGGAGGCATTGAGCCAACGTCTGCCGCCCGT
TCTAGACTTGCTCTTCGATCCGCAGGGATTCTGCCTGCTGAGTCGCTCCG
ATCGCGAGTACATCTACACGACCATAACGGACGAGTGGAACTACGGTCTG
AATGGGCGGCAGATGTTCTCCTGGCGCGAGAAGAACTTCACCGATACCGC
GGGCCTGACACGCGCCTTCGTCCAGGAGCAGCACTCCACGCCGCTCTTCA
CGCTGCGTAGCGAGCTCTTCAAGTGGTACTACTTCGTCGATCCCAGCCAG
GGCAATCGCTTGGCCGCCCTGCGCTCCGGCAGTCCCAGCTCCTCGACCAG
CACCTGGACCATCGCCTACGCGGGCGACGCACTCATCTTCCGGCAGCGCG
AACTCACGCTCTGTGCTGCCGAAAAGTTCGACGACGATCGTCGTCTGGTG
AAGATGCTGCCCGGCCAGATGCACACGCCGCCATCGGAGGCTTGCCAGTG
GCTACCGATCGCCTGTGCTCCGCCAAAATGAGCGGGATGGCTGTACCCTG
GAATGTTTGCAACAAATAAACTTATGCATTAGTGTATAAGTGTTTTTATT
CCTAGCCAGTCATGAATAATTAAATATATAATTTGTATTAAAAAAAAAAA
AAAAAAAAAA

GH04692.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32573-RC 1332 CG32573-RC 44..1332 1..1289 6430 99.9 Plus
CG32573-RA 1782 CG32573-RA 494..1782 1..1289 6430 99.9 Plus
CG42512-RA 1782 CG42512-RA 494..1782 1..1289 6430 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16541764..16542960 93..1289 5955 99.8 Plus
chrX 22417052 chrX 16541610..16541701 1..92 445 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16652079..16653277 93..1291 5980 99.9 Plus
X 23542271 X 16651925..16652016 1..92 460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16660177..16661375 93..1291 5980 99.9 Plus
X 23527363 X 16660023..16660114 1..92 460 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:11:18 has no hits.

GH04692.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:18 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16541610..16541701 1..92 98 -> Plus
chrX 16541764..16542929 93..1258 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:15:03 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1179 3..1181 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:44 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RC 1..1179 3..1181 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:05:55 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1179 3..1181 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:52 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1179 3..1181 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:41 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1179 3..1181 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:43 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 494..1782 1..1289 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:44 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RC 44..1332 1..1289 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:55 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 494..1782 1..1289 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:52 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 494..1782 1..1289 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:41 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 494..1782 1..1289 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:18 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
X 16651925..16652016 1..92 100 -> Plus
X 16652079..16653275 93..1289 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:18 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
X 16651925..16652016 1..92 100 -> Plus
X 16652079..16653275 93..1289 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:18 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
X 16651925..16652016 1..92 100 -> Plus
X 16652079..16653275 93..1289 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:55 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16545958..16546049 1..92 100 -> Plus
arm_X 16546112..16547308 93..1289 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:38 Download gff for GH04692.complete
Subject Subject Range Query Range Percent Splice Strand
X 16660177..16661373 93..1289 99   Plus
X 16660023..16660114 1..92 100 -> Plus

GH04692.hyp Sequence

Translation from 2 to 1180

> GH04692.hyp
MIQLLQLLLCTIPLVVGEVLPLQLDLDNSQITIRRSASRDDKLQVFHSIW
GAIRSDFATDTDKVKGLYSQLGGYIRDDVQCSSGSTGRSACELQQEVRRH
LRTLMAQRLANLLNAEESIQTYGMYIAASVEPALVRDILVHAIEDVYFHR
PLEKLVQQLEQLYADRDEVSFRTMIEAQLALFWRYQAMQDSSEAYLFNVA
HMVSKIRSHHMYASVDADLQKRVEALSQRLPPVLDLLFDPQGFCLLSRSD
REYIYTTITDEWNYGLNGRQMFSWREKNFTDTAGLTRAFVQEQHSTPLFT
LRSELFKWYYFVDPSQGNRLAALRSGSPSSSTSTWTIAYAGDALIFRQRE
LTLCAAEKFDDDRRLVKMLPGQMHTPPSEACQWLPIACAPPK*

GH04692.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32573-PC 392 CG32573-PC 1..392 1..392 2033 100 Plus
CG32573-PA 392 CG32573-PA 1..392 1..392 2033 100 Plus

GH04692.pep Sequence

Translation from 2 to 1180

> GH04692.pep
MIQLLQLLLCTIPLVVGEVLPLQLDLDNSQITIRRSASRDDKLQVFHSIW
GAIRSDFATDTDKVKGLYSQLGGYIRDDVQCSSGSTGRSACELQQEVRRH
LRTLMAQRLANLLNAEESIQTYGMYIAASVEPALVRDILVHAIEDVYFHR
PLEKLVQQLEQLYADRDEVSFRTMIEAQLALFWRYQAMQDSSEAYLFNVA
HMVSKIRSHHMYASVDADLQKRVEALSQRLPPVLDLLFDPQGFCLLSRSD
REYIYTTITDEWNYGLNGRQMFSWREKNFTDTAGLTRAFVQEQHSTPLFT
LRSELFKWYYFVDPSQGNRLAALRSGSPSSSTSTWTIAYAGDALIFRQRE
LTLCAAEKFDDDRRLVKMLPGQMHTPPSEACQWLPIACAPPK*

GH04692.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22298-PA 393 GF22298-PA 17..390 17..389 1481 73.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19064-PA 391 GG19064-PA 11..391 12..392 1802 90.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32573-PC 392 CG32573-PC 1..392 1..392 2033 100 Plus
CG32573-PA 392 CG32573-PA 1..392 1..392 2033 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12885-PA 392 GL12885-PA 17..392 17..392 1590 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17000-PA 392 GA17000-PA 17..392 17..392 1588 76.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13454-PA 392 GM13454-PA 1..392 1..392 1938 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17293-PA 392 GD17293-PA 1..392 1..392 1960 95.9 Plus
Dsim\GD18911-PA 103 GD18911-PA 5..103 294..392 449 94.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25225-PA 403 GK25225-PA 26..401 19..390 1198 58.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17285-PA 391 GE17285-PA 11..391 12..392 1788 89.5 Plus