Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH04692.complete Sequence
1310 bp (1310 high quality bases) assembled on 2002-03-19
GenBank Submission: AY094673
> GH04692.complete
AGATGATCCAGCTGCTCCAGTTGCTTCTATGTACTATTCCACTCGTTGTG
GGCGAGGTTCTGCCCCTGCAACTCGATTTGGACAACAGTCAAATTACCAT
ACGGCGAAGTGCCAGTCGCGATGACAAATTGCAGGTATTCCACAGCATCT
GGGGCGCCATTCGCTCCGACTTCGCCACCGATACGGACAAGGTGAAGGGC
CTGTACAGTCAGCTGGGCGGATATATTCGCGACGATGTGCAGTGCAGTAG
CGGCTCCACGGGTCGATCTGCCTGCGAGCTGCAGCAGGAGGTGCGACGCC
ACCTGCGGACCCTCATGGCCCAGCGGCTGGCCAATCTGTTGAACGCCGAG
GAGAGCATTCAGACATACGGTATGTACATAGCGGCCAGTGTGGAGCCCGC
CCTGGTCAGGGACATTCTGGTGCACGCCATCGAGGACGTGTACTTCCATC
GACCGCTGGAGAAGCTGGTGCAGCAGCTGGAGCAACTGTACGCGGATCGC
GACGAGGTCAGCTTTCGCACGATGATCGAGGCGCAATTGGCGCTCTTCTG
GCGCTATCAGGCCATGCAGGACAGCAGCGAGGCGTACCTGTTCAACGTCG
CGCACATGGTCAGCAAGATCCGGAGCCATCACATGTACGCCAGCGTCGAT
GCGGATCTCCAGAAGCGAGTGGAGGCATTGAGCCAACGTCTGCCGCCCGT
TCTAGACTTGCTCTTCGATCCGCAGGGATTCTGCCTGCTGAGTCGCTCCG
ATCGCGAGTACATCTACACGACCATAACGGACGAGTGGAACTACGGTCTG
AATGGGCGGCAGATGTTCTCCTGGCGCGAGAAGAACTTCACCGATACCGC
GGGCCTGACACGCGCCTTCGTCCAGGAGCAGCACTCCACGCCGCTCTTCA
CGCTGCGTAGCGAGCTCTTCAAGTGGTACTACTTCGTCGATCCCAGCCAG
GGCAATCGCTTGGCCGCCCTGCGCTCCGGCAGTCCCAGCTCCTCGACCAG
CACCTGGACCATCGCCTACGCGGGCGACGCACTCATCTTCCGGCAGCGCG
AACTCACGCTCTGTGCTGCCGAAAAGTTCGACGACGATCGTCGTCTGGTG
AAGATGCTGCCCGGCCAGATGCACACGCCGCCATCGGAGGCTTGCCAGTG
GCTACCGATCGCCTGTGCTCCGCCAAAATGAGCGGGATGGCTGTACCCTG
GAATGTTTGCAACAAATAAACTTATGCATTAGTGTATAAGTGTTTTTATT
CCTAGCCAGTCATGAATAATTAAATATATAATTTGTATTAAAAAAAAAAA
AAAAAAAAAA
GH04692.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32573-RC | 1332 | CG32573-RC | 44..1332 | 1..1289 | 6430 | 99.9 | Plus |
CG32573-RA | 1782 | CG32573-RA | 494..1782 | 1..1289 | 6430 | 99.9 | Plus |
CG42512-RA | 1782 | CG42512-RA | 494..1782 | 1..1289 | 6430 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 16541764..16542960 | 93..1289 | 5955 | 99.8 | Plus |
chrX | 22417052 | chrX | 16541610..16541701 | 1..92 | 445 | 98.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16652079..16653277 | 93..1291 | 5980 | 99.9 | Plus |
X | 23542271 | X | 16651925..16652016 | 1..92 | 460 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 16660177..16661375 | 93..1291 | 5980 | 99.9 | Plus |
X | 23527363 | X | 16660023..16660114 | 1..92 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 15:11:18 has no hits.
GH04692.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:18 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 16541610..16541701 | 1..92 | 98 | -> | Plus |
chrX | 16541764..16542929 | 93..1258 | 99 | -> | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:15:03 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 1..1179 | 3..1181 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:44 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RC | 1..1179 | 3..1181 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:05:55 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 1..1179 | 3..1181 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:52 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 1..1179 | 3..1181 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:41 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 1..1179 | 3..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:43 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 494..1782 | 1..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:44 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RC | 44..1332 | 1..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:55 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 494..1782 | 1..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:52 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 494..1782 | 1..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:41 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 494..1782 | 1..1289 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:18 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16651925..16652016 | 1..92 | 100 | -> | Plus |
X | 16652079..16653275 | 93..1289 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:18 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16651925..16652016 | 1..92 | 100 | -> | Plus |
X | 16652079..16653275 | 93..1289 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:18 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16651925..16652016 | 1..92 | 100 | -> | Plus |
X | 16652079..16653275 | 93..1289 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:55 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16545958..16546049 | 1..92 | 100 | -> | Plus |
arm_X | 16546112..16547308 | 93..1289 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:38 Download gff for
GH04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16660177..16661373 | 93..1289 | 99 | | Plus |
X | 16660023..16660114 | 1..92 | 100 | -> | Plus |
GH04692.hyp Sequence
Translation from 2 to 1180
> GH04692.hyp
MIQLLQLLLCTIPLVVGEVLPLQLDLDNSQITIRRSASRDDKLQVFHSIW
GAIRSDFATDTDKVKGLYSQLGGYIRDDVQCSSGSTGRSACELQQEVRRH
LRTLMAQRLANLLNAEESIQTYGMYIAASVEPALVRDILVHAIEDVYFHR
PLEKLVQQLEQLYADRDEVSFRTMIEAQLALFWRYQAMQDSSEAYLFNVA
HMVSKIRSHHMYASVDADLQKRVEALSQRLPPVLDLLFDPQGFCLLSRSD
REYIYTTITDEWNYGLNGRQMFSWREKNFTDTAGLTRAFVQEQHSTPLFT
LRSELFKWYYFVDPSQGNRLAALRSGSPSSSTSTWTIAYAGDALIFRQRE
LTLCAAEKFDDDRRLVKMLPGQMHTPPSEACQWLPIACAPPK*
GH04692.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32573-PC | 392 | CG32573-PC | 1..392 | 1..392 | 2033 | 100 | Plus |
CG32573-PA | 392 | CG32573-PA | 1..392 | 1..392 | 2033 | 100 | Plus |
GH04692.pep Sequence
Translation from 2 to 1180
> GH04692.pep
MIQLLQLLLCTIPLVVGEVLPLQLDLDNSQITIRRSASRDDKLQVFHSIW
GAIRSDFATDTDKVKGLYSQLGGYIRDDVQCSSGSTGRSACELQQEVRRH
LRTLMAQRLANLLNAEESIQTYGMYIAASVEPALVRDILVHAIEDVYFHR
PLEKLVQQLEQLYADRDEVSFRTMIEAQLALFWRYQAMQDSSEAYLFNVA
HMVSKIRSHHMYASVDADLQKRVEALSQRLPPVLDLLFDPQGFCLLSRSD
REYIYTTITDEWNYGLNGRQMFSWREKNFTDTAGLTRAFVQEQHSTPLFT
LRSELFKWYYFVDPSQGNRLAALRSGSPSSSTSTWTIAYAGDALIFRQRE
LTLCAAEKFDDDRRLVKMLPGQMHTPPSEACQWLPIACAPPK*
GH04692.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF22298-PA | 393 | GF22298-PA | 17..390 | 17..389 | 1481 | 73.8 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19064-PA | 391 | GG19064-PA | 11..391 | 12..392 | 1802 | 90.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32573-PC | 392 | CG32573-PC | 1..392 | 1..392 | 2033 | 100 | Plus |
CG32573-PA | 392 | CG32573-PA | 1..392 | 1..392 | 2033 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL12885-PA | 392 | GL12885-PA | 17..392 | 17..392 | 1590 | 76.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA17000-PA | 392 | GA17000-PA | 17..392 | 17..392 | 1588 | 76.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM13454-PA | 392 | GM13454-PA | 1..392 | 1..392 | 1938 | 95.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17293-PA | 392 | GD17293-PA | 1..392 | 1..392 | 1960 | 95.9 | Plus |
Dsim\GD18911-PA | 103 | GD18911-PA | 5..103 | 294..392 | 449 | 94.9 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK25225-PA | 403 | GK25225-PA | 26..401 | 19..390 | 1198 | 58.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17285-PA | 391 | GE17285-PA | 11..391 | 12..392 | 1788 | 89.5 | Plus |