Clone GH04732 Report

Search the DGRC for GH04732

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:47
Well:32
Vector:pOT2
Associated Gene/TranscriptCG8481-RA
Protein status:GH04732.pep: gold
Preliminary Size:2200
Sequenced Size:1410

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8481 2001-01-01 Release 2 assignment
CG8481 2001-07-04 Blastp of sequenced clone
CG8481 2003-01-01 Sim4 clustering to Release 3
CG8481 2008-04-29 Release 5.5 accounting
CG8481 2008-08-15 Release 5.9 accounting
CG8481 2008-12-18 5.12 accounting

Clone Sequence Records

GH04732.complete Sequence

1410 bp (1410 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060239

> GH04732.complete
AGAAGAAGAAGCAGCAGGGGAGCGTCTGCGAAAAAGTTTAAAAATAAACA
AATTCCGTTTTAAATCAAACTGATATTCAATTTTCCGGGCGCGCAGTAAA
ATCGTAGCAGTCCACACACATACACCAAAGAGAGTCCGTTTCTGAGGCGA
AATTTGTGCTCTCACACGGAACTTGGCCCATTTCTTCGGGACGCAATATC
ATAATTGGGAATCATATCAGTTCGTTCTGTTCACTTCGTCGTGGCGCACG
GGAATCAGACGCCCAGCAGCGCAGAGCTCTCGTAATGGGGCTTCCTCCAT
TCAATGTCAGCGGCAGCCCGTTCAATGTGGTTCCCATTCACAACTACCCG
GAGCTTATGAAAGACACTTGCGCCCTAATCAACGCAGAGTGGCCACGATC
GGAAACGGCGCGCATGCGCTCCCTGGAGGCCTCCTGTGACAGCCTACCCT
GCAGCCTGGTGCTGACCACCGAGGGAATGTGCCGCGTGATCGCTCACCTC
AAGCTCAGCCCGATCAATTCCAAGAAGAAGGCCTGCTTCGTCGAGTCCGT
GGTGGTGGACAAGCGGCACCGTGGCCAGGGATTCGGCAAGCTGATCATGA
AGTTCGCCGAGGACTATTGCCGCGTCGTGCTGGACCTCAAGACCATATAT
CTGTCCACCATCGACCAGGATGGATTCTACGAACGCATTGGCTACGAGTA
CTGCGCTCCCATTACAATGTATGGGCCGCGCCACTGTGAGCTGCCCAGCT
TGCAAAATGCCAAAAAGAAATACATGAAGAAGGTCTTATAGACGTCAACG
CCAGTAGTAGTGGGCTTGGCTAAATTGGGCCATACCCAGCCCGATCAGAG
AGTGGCAGTGAACTAGTCAAATTGGCAAATGCTTGAAATTCTTTACGGGT
TTTACCTGCCAGCAGCTGCTTCGAGCCATAACCTGTGGATGCCAGGCAGT
CTGCCAAGTGCATGTGTGATTGCCTCGTTGCTCTGGCAATTTGCAAAGCA
AAGCTAAAGCTTTTGATTCCATTACACCGATAAGCAACCATTCATTCACC
AAGCGCTTGTGTTGATTTTTAAATATTACTTTCCGCATGTATTTTTTAAA
CTTTTTGGTTCTTTTTGTATGACAAAAGTGATCCGGGCTGTTCGGTACAT
CTATAAGGCTAATGTTAACCTAATCCTAACTGTTTAGCAATTATGATTTG
TTATAGTTTTGCTCAAGTGTGTGCATAATTGCTCCTAGACAAAAATCTAC
CTGCAATCTACCTGCAATGGTGATGATTATGATAATAAGAAGCTCAAGTA
TCTTCCAACGAAACATAGCAAATAGACATATCGAGCCTTAGCATTAAGCA
CTCAACGAAGGGCAATAACTTCAAATAAAACGTGTAGAAACTAAAAAAAA
AAAAAAAAAA

GH04732.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8481-RA 1441 CG8481-RA 50..1441 1..1392 6960 100 Plus
CG8481-RB 1494 CG8481-RB 390..1494 288..1392 5525 100 Plus
CG8481.b 1174 CG8481.b 70..1174 288..1392 5525 100 Plus
CG8481-RB 1494 CG8481-RB 9..295 1..287 1435 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5594758..5595861 287..1392 5465 99.8 Plus
chr3R 27901430 chr3R 5593689..5593977 1..288 1395 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9768922..9770030 287..1395 5545 100 Plus
3R 32079331 3R 9767854..9768141 1..288 1440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9509753..9510861 287..1395 5545 100 Plus
3R 31820162 3R 9508685..9508972 1..288 1440 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:54:22 has no hits.

GH04732.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:55:17 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5593689..5593976 1..287 99 -> Plus
chr3R 5594759..5595861 288..1392 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:15:13 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 1..507 285..791 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:47 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 1..507 285..791 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:50:14 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 1..507 285..791 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:13 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 1..507 285..791 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:16 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 1..507 285..791 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:21 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 4..1395 1..1392 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:47 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 4..1395 1..1392 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:50:14 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 21..1412 1..1392 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:13 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 4..1395 1..1392 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:16 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
CG8481-RA 21..1412 1..1392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:17 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9767854..9768140 1..287 100 -> Plus
3R 9768923..9770027 288..1392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:17 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9767854..9768140 1..287 100 -> Plus
3R 9768923..9770027 288..1392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:17 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9767854..9768140 1..287 100 -> Plus
3R 9768923..9770027 288..1392 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:50:14 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5593576..5593862 1..287 100 -> Plus
arm_3R 5594645..5595749 288..1392 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:15 Download gff for GH04732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9508685..9508971 1..287 100 -> Plus
3R 9509754..9510858 288..1392 100   Plus

GH04732.pep Sequence

Translation from 284 to 790

> GH04732.pep
MGLPPFNVSGSPFNVVPIHNYPELMKDTCALINAEWPRSETARMRSLEAS
CDSLPCSLVLTTEGMCRVIAHLKLSPINSKKKACFVESVVVDKRHRGQGF
GKLIMKFAEDYCRVVLDLKTIYLSTIDQDGFYERIGYEYCAPITMYGPRH
CELPSLQNAKKKYMKKVL*

GH04732.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23039-PA 178 GF23039-PA 12..178 2..168 871 96.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17125-PA 178 GG17125-PA 12..178 2..168 896 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17409-PA 178 GH17409-PA 12..178 2..168 829 91.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8481-PA 168 CG8481-PA 1..168 1..168 898 100 Plus
CG8481-PB 178 CG8481-PB 12..178 2..168 893 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22739-PA 178 GI22739-PA 12..178 2..168 844 92.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24304-PA 168 GL24304-PA 1..168 1..168 874 95.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21106-PB 168 GA21106-PB 1..168 1..168 874 95.2 Plus
Dpse\GA21106-PA 178 GA21106-PA 12..178 2..168 868 95.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23837-PA 178 GM23837-PA 12..178 2..168 897 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18647-PA 125 GD18647-PA 1..125 44..168 664 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22741-PA 178 GJ22741-PA 12..178 2..168 844 92.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11964-PA 178 GK11964-PA 12..178 2..168 880 97.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25985-PA 178 GE25985-PA 12..178 2..168 896 100 Plus

GH04732.hyp Sequence

Translation from 284 to 790

> GH04732.hyp
MGLPPFNVSGSPFNVVPIHNYPELMKDTCALINAEWPRSETARMRSLEAS
CDSLPCSLVLTTEGMCRVIAHLKLSPINSKKKACFVESVVVDKRHRGQGF
GKLIMKFAEDYCRVVLDLKTIYLSTIDQDGFYERIGYEYCAPITMYGPRH
CELPSLQNAKKKYMKKVL*

GH04732.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8481-PA 168 CG8481-PA 1..168 1..168 898 100 Plus
CG8481-PB 178 CG8481-PB 12..178 2..168 893 100 Plus