Clone GH04763 Report

Search the DGRC for GH04763

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:47
Well:63
Vector:pOT2
Associated Gene/TranscriptDCP1-RA
Protein status:GH04763.pep: gold
Preliminary Size:1300
Sequenced Size:1216

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11183 2001-01-01 Release 2 assignment
CG11183 2003-01-01 Sim4 clustering to Release 3
CG11183 2005-03-18 Blastp of sequenced clone
Dcp1 2008-04-29 Release 5.5 accounting
Dcp1 2008-08-15 Release 5.9 accounting
Dcp1 2008-12-18 5.12 accounting

Clone Sequence Records

GH04763.complete Sequence

1216 bp (1216 high quality bases) assembled on 2005-03-18

GenBank Submission: BT021964

> GH04763.complete
CAATTCGCAATAGCACAGCCAAAACTGAAGATTACATACAATTTACAATG
GCCGACGAGAGCATCACGCGAATGAACCTGGCGGCCATCAAGAAGATCGA
CCCGTACGCCAAGGAGATCGTGGATTCGTCCTCGCACGTCGCCTTCTACA
CGTTCAACTCGTCGCAGAACGAGTGGGAAAAGACCGATGTGGAGGGAGCC
TTCTTCATATACCACCGCAACGCGGAGCCCTTTCACAGCATCTTCATCAA
CAACCGACTGAACACCACGTCCTTCGTGGAGCCCATCACCGGCAGCCTGG
AGCTGCAGTCGCAGCCGCCGTTCCTGCTCTACCGCAACGAGCGCTCGCGC
ATCCGCGGCTTCTGGTTCTACAACAGCGAGGAGTGCGACCGCATCAGCGG
CTTGGTGAACGGGCTGCTCAAGTCCAAGGATCAGGGAACGAATGGCCAGG
CCCAGCGTCACGTCTCCGCGCCCCAGCAGCCAAAGCAGGACAGCAGCCAG
CCGGCCAGCATATTCAACATGCTGACCAAGGCCCAGAAGGACTACAATGC
CCAGGTGAGCGGCGGGCAGCCGAAGACGCCTTCGGCGGAGAACGTAACGG
CCGGCAATGTGTTGAAGTTCTTCGAATCGGCCAAGCAGGCCACGGCAGAG
TCACTGTTCCACCGCGTCCAGCCGCTCTCCGTGGACCAGCTGGAGAAACA
GCAGCGGGCAGCCACGCCTGGCGAGGATCTGTTGCCCCCGGCAGGCAGGG
ACAATCACGAGAGCCGGCTGTCGCCCTTCCAGAAGATGCAGCAGCTTAAC
ATTCAGCTCCTGAGCGACCTGAAGATCGGTAAAAGCTACGCTACGGCTCA
ATCTCCGACAGTCGCCCCGTCCTCGTCGGCGCTGATGGCCAACGACGATG
CCGGCAAGTGCTTGCGGAGACTGCTGGCTGGCGACAAGCCCGGGCCGGCC
CTCATGCCGCCCACCATGTTCGACGCGCCCAACAACGGCAATCCGGAGCC
ACAGCAGCCACAGCAGCCACAGCAGCCACTGCTGAACTCGACGCAGTTCG
TCCAGGCCTTCACGTACCTTATCCAGAACGATAAGGAGTTTGCCAACAAG
CTGCACAAGGCCTACCTGAACGGCTGTTCCAATCTACTGCTGGACTCCAG
CTCCACATATCAATAAACAGAAATATTCAACATTTCCGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

GH04763.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dcp1-RA 1324 Dcp1-RA 27..1216 1..1190 5950 100 Plus
Dcp1-RB 1214 Dcp1-RB 27..1214 1..1188 5940 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19775095..19776282 1188..1 5940 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:31:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23889050..23890239 1190..1 5950 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23890249..23891438 1190..1 5950 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:48:16 has no hits.

GH04763.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:49:27 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19775095..19776282 1..1188 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:07:35 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp1-RB 1..1119 48..1166 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:10:36 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp1-RA 1..1119 48..1166 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:52:30 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp1-RA 1..1119 48..1166 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:01 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
DCP1-RA 1..1119 48..1166 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:57:48 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp1-RA 27..1214 1..1188 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:07:35 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp1-RA 27..1214 1..1188 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:10:36 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp1-RA 38..1225 1..1188 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:52:31 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp1-RA 27..1214 1..1188 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:01 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
DCP1-RA 38..1225 1..1188 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:27 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23889052..23890239 1..1188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:27 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23889052..23890239 1..1188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:27 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23889052..23890239 1..1188 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:10:36 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19776575..19777762 1..1188 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:27:28 Download gff for GH04763.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23890269..23891456 1..1188 100   Minus

GH04763.hyp Sequence

Translation from 2 to 1165

> GH04763.hyp
IRNSTAKTEDYIQFTMADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYT
FNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFVEPITGSLE
LQSQPPFLLYRNERSRIRGFWFYNSEECDRISGLVNGLLKSKDQGTNGQA
QRHVSAPQQPKQDSSQPASIFNMLTKAQKDYNAQVSGGQPKTPSAENVTA
GNVLKFFESAKQATAESLFHRVQPLSVDQLEKQQRAATPGEDLLPPAGRD
NHESRLSPFQKMQQLNIQLLSDLKIGKSYATAQSPTVAPSSSALMANDDA
GKCLRRLLAGDKPGPALMPPTMFDAPNNGNPEPQQPQQPQQPLLNSTQFV
QAFTYLIQNDKEFANKLHKAYLNGCSNLLLDSSSTYQ*

GH04763.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
DCP1-PB 372 CG11183-PB 1..372 16..387 1931 100 Plus
DCP1-PA 372 CG11183-PA 1..372 16..387 1931 100 Plus

GH04763.pep Sequence

Translation from 47 to 1165

> GH04763.pep
MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEG
AFFIYHRNAEPFHSIFINNRLNTTSFVEPITGSLELQSQPPFLLYRNERS
RIRGFWFYNSEECDRISGLVNGLLKSKDQGTNGQAQRHVSAPQQPKQDSS
QPASIFNMLTKAQKDYNAQVSGGQPKTPSAENVTAGNVLKFFESAKQATA
ESLFHRVQPLSVDQLEKQQRAATPGEDLLPPAGRDNHESRLSPFQKMQQL
NIQLLSDLKIGKSYATAQSPTVAPSSSALMANDDAGKCLRRLLAGDKPGP
ALMPPTMFDAPNNGNPEPQQPQQPQQPLLNSTQFVQAFTYLIQNDKEFAN
KLHKAYLNGCSNLLLDSSSTYQ*

GH04763.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12057-PA 357 GF12057-PA 1..357 1..372 1407 78.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19983-PA 363 GG19983-PA 1..363 1..372 1878 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21691-PA 374 GH21691-PA 1..374 1..372 1162 63.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
DCP1-PB 372 CG11183-PB 1..372 1..372 1931 100 Plus
DCP1-PA 372 CG11183-PA 1..372 1..372 1931 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18845-PA 372 GI18845-PA 1..372 1..372 1211 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10921-PA 343 GL10921-PA 1..336 1..357 1236 71.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10823-PA 343 GA10823-PA 1..336 1..357 1240 71.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15497-PA 366 GM15497-PA 1..366 1..372 1903 96.8 Plus
Dsec\GM13666-PA 82 GM13666-PA 1..82 1..82 419 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25000-PA 366 GD25000-PA 1..366 1..372 1914 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21878-PA 363 GJ21878-PA 1..363 1..372 1190 67 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15859-PA 380 GK15859-PA 1..380 1..372 1301 70.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11516-PA 367 GE11516-PA 1..367 1..372 1870 95.2 Plus