Clone GH04826 Report

Search the DGRC for GH04826

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:48
Well:26
Vector:pOT2
Associated Gene/TranscriptCG31550-RA
Protein status:GH04826.pep: gold
Preliminary Size:2200
Sequenced Size:1868

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12168 2001-01-01 Release 2 assignment
CG31550 2001-10-10 Blastp of sequenced clone
CG31550 2003-01-01 Sim4 clustering to Release 3
CG31550 2008-04-29 Release 5.5 accounting
CG31550 2008-08-15 Release 5.9 accounting
CG31550 2008-12-18 5.12 accounting

Clone Sequence Records

GH04826.complete Sequence

1868 bp (1868 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060628

> GH04826.complete
CCGTCTTAATTGGGGATTTTTCACGTTTACTTAATTGCTTTCGCAAGTTG
AATCATTGTATAAGTGCCAGTTCTTTAGGATAGTAACAATTGAATTTTAA
AAATTAGTCCGATTTATGTTATAGTTTGGTTGTTTTTAATTGCCATTACT
CCGATATTTCACACGACACACACAGACGCACAGATTTCCGTTCCGCTTAC
TCAATCGTGAATTTAAAATCACAAACAGTGGACATGTACATGTTTTTCTT
TGATGCGTTTTAAGTTAGATGTCTGATTAATACTACCAATGCCATGTAAC
ATCTGACAAAACGGACCAACTTGATGGGGGTGTAGGAGGATTAGCCAGAC
CAGTCGCGTGGACTCATCGAGCGCACAGTGTTCCGTCGTTCCTCGATCGT
CATCTAAAGTCTGGAGGAGCCAGCCGGCGGATGACAACTAATAATCTCTG
AATAAGCCGCTATTGGGGCGCCTCAAACAGTTATTCATATAATGTCTTTG
TACACGTGACTAACGTCGAGCACTTTTCATTGTACTTTTCACTTCTTTTG
AATTTTGATAATAGGTTTCTTTATGATAAGAGCTGCGAGCAGTATCGAAG
CTATAGCGACCAACTCCTCGACTACAAACAGCAGCGGGCTGAGCGACAAC
GGGAGCGGGAGCATCAGAAGCTAAGCCGGGACCATCAGCCGCAGGCGACG
GAGCAGACGGACGCACAGCAACACCGCGAGGAGCAGCACAGCAACTCGGC
GGCTGACAAGTACGACCCAGAGTCGGCCATCAGCGCGGACTTCGACTCGG
ATGACGAGTACATGCGGGGCATGATGGATCGCAACCGGGACAACATCAAG
CGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGCGAACG
GGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGACGACC
AAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCAAGAGC
CGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCGGGAAA
CTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAACAGATC
CCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGCTGAGC
GAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTGCTGTA
TCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCGTGGCG
GTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCGGGACG
TGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTATGGGC
AAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGACTTTC
TGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGAAGAAG
AACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTAAAGGA
GGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGAGGGGC
AGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACAAGGCA
CCGCAACGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCCCAGCC
AGAGGACTGCGACAATGAATATGACGCCTACAGGAAGCGAATGATGTTGG
CCTATCGTTTTCGTCCAAATCCTTTGAACAATCCACGTCGCGCCTACTAC
TAGCACTACCTAAAATGACCCCTACCCACATAACTACCAATATCCTAGGT
CCACTTATTCAACTGCAACTTTGCTGAATAAAATGTCCTCGTTTAAATTA
AAAAAAAAAAAAAAAAAA

GH04826.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RA 1933 CG31550-RA 42..1893 1..1852 9260 100 Plus
CG31550-RC 2696 CG31550-RC 1367..2656 563..1852 6450 100 Plus
CG31550.a 2823 CG31550.a 1495..2783 564..1852 6445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1312930..1313967 1..1038 5190 100 Plus
chr3R 27901430 chr3R 1314191..1314750 1038..1597 2800 100 Plus
chr3R 27901430 chr3R 1314798..1314932 1592..1726 660 99.3 Plus
chr3R 27901430 chr3R 1315025..1315148 1726..1849 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5487271..5488308 1..1038 5190 100 Plus
3R 32079331 3R 5488532..5489091 1038..1597 2800 100 Plus
3R 32079331 3R 5489139..5489273 1592..1726 660 99.3 Plus
3R 32079331 3R 5489366..5489492 1726..1852 635 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5228102..5229139 1..1038 5190 100 Plus
3R 31820162 3R 5229363..5229922 1038..1597 2800 100 Plus
3R 31820162 3R 5229970..5230104 1592..1726 660 99.2 Plus
3R 31820162 3R 5230197..5230323 1726..1852 635 100 Plus
Blast to na_te.dros performed 2019-03-16 16:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2298..2410 1..117 115 60.2 Plus

GH04826.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:12:17 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1312930..1313966 1..1037 100 -> Plus
chr3R 1314191..1314749 1038..1596 100 -> Plus
chr3R 1314803..1314932 1597..1726 100 -> Plus
chr3R 1315026..1315148 1727..1849 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:15:50 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RB 1310..2499 564..1753 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:56 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RB 1310..2499 564..1753 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:02:55 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RB 1310..2499 564..1753 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:25:06 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RB 1310..2499 564..1753 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:21:27 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RB 1310..2499 564..1753 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:51 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 1..1849 1..1849 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:56 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 1..1849 1..1849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:02:55 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 1..1849 1..1849 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:25:06 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 1..1849 1..1849 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:21:27 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 1..1849 1..1849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:17 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5487271..5488307 1..1037 100 -> Plus
3R 5488532..5489090 1038..1596 100 -> Plus
3R 5489144..5489273 1597..1726 100 -> Plus
3R 5489367..5489489 1727..1849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:17 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5487271..5488307 1..1037 100 -> Plus
3R 5488532..5489090 1038..1596 100 -> Plus
3R 5489144..5489273 1597..1726 100 -> Plus
3R 5489367..5489489 1727..1849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:17 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5487271..5488307 1..1037 100 -> Plus
3R 5488532..5489090 1038..1596 100 -> Plus
3R 5489144..5489273 1597..1726 100 -> Plus
3R 5489367..5489489 1727..1849 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:02:55 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1315089..1315211 1727..1849 100   Plus
arm_3R 1312993..1314029 1..1037 100 -> Plus
arm_3R 1314254..1314812 1038..1596 100 -> Plus
arm_3R 1314866..1314995 1597..1726 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:17 Download gff for GH04826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5228102..5229138 1..1037 100 -> Plus
3R 5229363..5229921 1038..1596 100 -> Plus
3R 5229975..5230104 1597..1726 100 -> Plus
3R 5230198..5230320 1727..1849 100   Plus

GH04826.hyp Sequence

Translation from 811 to 1752

> GH04826.hyp
MRGMMDRNRDNIKRRIECRNELSDEERREREEAASGEPPDGDDQDDQDDK
ESQRQRRKRERKSRWGEKEQQLPSSSTSGNFGNQNKPILSGITRTDPALL
QYARLNYGSTQLSEEQWKQCEEHYKVNLLYQDMMRKRQEIDRLARGGKFK
YEYDSDEDIEGGTWEHKLRTAEMEATSLWANALTKQSEGKHHIGDFLPPE
ELKKFMEQYEAKKNNRQPDLSDYKEYKLKEDNIGFQMLQKLGWKEGQGLG
QDGAGIVDPVNKAPQRDGNQGLGVSSAAQPEDCDNEYDAYRKRMMLAYRF
RPNPLNNPRRAYY*

GH04826.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PA 313 CG31550-PA 1..313 1..313 1679 100 Plus
CG31550-PB 832 CG31550-PB 520..832 1..313 1679 100 Plus
CG31550-PD 835 CG31550-PD 523..835 1..313 1679 100 Plus

GH04826.pep Sequence

Translation from 811 to 1752

> GH04826.pep
MRGMMDRNRDNIKRRIECRNELSDEERREREEAASGEPPDGDDQDDQDDK
ESQRQRRKRERKSRWGEKEQQLPSSSTSGNFGNQNKPILSGITRTDPALL
QYARLNYGSTQLSEEQWKQCEEHYKVNLLYQDMMRKRQEIDRLARGGKFK
YEYDSDEDIEGGTWEHKLRTAEMEATSLWANALTKQSEGKHHIGDFLPPE
ELKKFMEQYEAKKNNRQPDLSDYKEYKLKEDNIGFQMLQKLGWKEGQGLG
QDGAGIVDPVNKAPQRDGNQGLGVSSAAQPEDCDNEYDAYRKRMMLAYRF
RPNPLNNPRRAYY*

GH04826.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17256-PA 839 GF17256-PA 526..839 1..313 1430 93 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12860-PA 831 GG12860-PA 519..831 1..313 1659 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18599-PA 912 GH18599-PA 597..912 1..313 1413 89.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PD 835 CG31550-PD 523..835 1..313 1679 100 Plus
CG31550-PB 832 CG31550-PB 520..832 1..313 1679 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23081-PA 806 GI23081-PA 494..806 1..313 1409 89.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21667-PA 871 GL21667-PA 556..871 1..313 1394 90.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30091-PA 869 GA30091-PA 554..869 1..313 1394 90.9 Plus
Dpse\GA30091-PC 316 GA30091-PC 1..316 1..313 1368 90.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10812-PA 834 GM10812-PA 522..834 1..313 1663 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19790-PA 834 GD19790-PA 522..834 1..313 1675 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22701-PA 870 GJ22701-PA 558..870 1..313 1410 90.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13253-PA 854 GK13253-PA 534..854 1..313 1389 87.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25473-PA 825 GE25473-PA 513..825 1..313 1652 96.8 Plus