Clone GH04835 Report

Search the DGRC for GH04835

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:48
Well:35
Vector:pOT2
Associated Gene/TranscriptCG30160-RA
Protein status:GH04835.pep: gold
Preliminary Size:1630
Sequenced Size:1562

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18816 2001-01-01 Release 2 assignment
CG18816 2001-10-10 Blastp of sequenced clone
CG30160 2003-01-01 Sim4 clustering to Release 3
CG18816 2003-01-01 Sim4 clustering to Release 3
CG30160 2008-04-29 Release 5.5 accounting
Tsp42Eb 2008-08-15 Release 5.9 accounting
Tsp42Eb 2008-12-18 5.12 accounting

Clone Sequence Records

GH04835.complete Sequence

1562 bp (1562 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060629

> GH04835.complete
CAATCATTGGCTCTATTGACATATTTCCGTAGAACTAACCTATCAGAAGA
CTATATTTAGTTAGTTAGCTTTTTAGGGCTCAGACGAAATCTTATCTCCA
TTGAGCTATTTTATCTATGAAGGGCACATAGCCGTTTTGTGAATGTCAAT
GGGAAATTATTCCGCCGTGGAAACCCCAATAGTTGCCAAAATCTTGTTGA
AGTTAGGCTGGGAGTGCACTCGCTAAAAGGTTTATTGCTCGATTGATAGT
ACATAAATCTAGGCGATAAGATCGGGGACTCACGGGGAAACGGACTCCAA
GCAACGTAATATGTGAGTCAGCGTGCACCGCGTACTCTTGACTGGTGATA
AGGCAAGGTGTGGAGGGTGTGAATGATTCATCTTATGAACGATCTAACGC
CCCCAAGATGGAATCGCACGAGGGCTAGATAAAATTCCGCCACCAGCAGT
TTGCACCTACCATTCGTTGAATGAATCATTGCGCCAAGGATGTAATTTCC
CAGGTTCGGACCACCACAATGATCTGGTATCTCGTGGGTGCAAAGCGATT
CACCAAGTACAAGTACATGGGCATCGGAGCTTCCAGCACAAGTACATACG
GAATTTTATGGCCGAGATAAGAGCGCAGCCGATAAGATGAGGACTCCGAG
TAAGCTTTAATAGCCGCGTTCTGTCCGAGGGCCCATTCAGTTAGACGAAC
ATCGTCACATCGAACGAACGGATTATCCAGCTAGCCAACGAGAAACCCGA
ACAGAACCCAGCACCATGAACTGTCTATCCGCGATGTTCAAGTACCTGCT
GTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTGG
TGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGGA
GGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTGT
CACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAACG
CCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCTG
CAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGTC
CAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCCC
AGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAAC
ACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACAA
GGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGCT
GCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCGA
TGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGTC
GTGCTGCCTCGCCAGCGCGATGAGGAAGCGCTAGAGCCGAAGTCAGATAC
AATCCTTAGACGTAGCCCAGTTCATAGCATAAATCCAACACACGAATTCC
TCACTCACTCACTCACCGTAAATAAACCAGAATAGGTTAAGCCCAAAAAA
AAAAAAAAAAAA

GH04835.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eb-RA 1725 Tsp42Eb-RA 1..1546 1..1546 7715 99.9 Plus
Tsp42Eb-RB 1037 Tsp42Eb-RB 1..858 689..1546 4275 99.8 Plus
CG30160-RA 1061 CG30160-RA 1..843 704..1546 4200 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2885573..2886589 1..1017 5085 100 Plus
chr2R 21145070 chr2R 2891861..2892877 1..1017 5085 100 Plus
chr2R 21145070 chr2R 2886891..2887252 1183..1544 1795 99.7 Plus
chr2R 21145070 chr2R 2893179..2893540 1183..1544 1795 99.7 Plus
chr2R 21145070 chr2R 2886654..2886818 1018..1182 825 100 Plus
chr2R 21145070 chr2R 2892942..2893106 1018..1182 825 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6998165..6999181 1..1017 5085 100 Plus
2R 25286936 2R 7004453..7005469 1..1017 5085 100 Plus
2R 25286936 2R 6999483..6999846 1183..1546 1805 99.7 Plus
2R 25286936 2R 7005771..7006134 1183..1546 1805 99.7 Plus
2R 25286936 2R 6999246..6999410 1018..1182 825 100 Plus
2R 25286936 2R 7005534..7005698 1018..1182 825 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7005652..7006668 1..1017 5085 100 Plus
2R 25260384 2R 6999364..7000380 1..1017 5085 100 Plus
2R 25260384 2R 7006970..7007333 1183..1546 1805 99.7 Plus
2R 25260384 2R 7000682..7001045 1183..1546 1805 99.7 Plus
2R 25260384 2R 7006733..7006897 1018..1182 825 100 Plus
2R 25260384 2R 7000445..7000609 1018..1182 825 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:04:53 has no hits.

GH04835.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:05:49 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2886654..2886818 1018..1182 100 -> Plus
chr2R 2885573..2886589 1..1017 100 -> Plus
chr2R 2886891..2887252 1183..1544 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:15:56 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 1..669 766..1434 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:42 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RC 1..669 766..1434 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:01:32 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 1..669 766..1434 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:27 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 1..669 766..1434 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:22:17 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 1..669 766..1434 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:21:07 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RA 1..1544 1..1544 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:42 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 1..856 689..1544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:01:32 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 1..861 684..1544 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:27 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RA 1..1544 1..1544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:22:17 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 1..861 684..1544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:05:49 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6998165..6999181 1..1017 100 -> Plus
2R 6999246..6999410 1018..1182 100 -> Plus
2R 6999483..6999844 1183..1544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:05:49 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6998165..6999181 1..1017 100 -> Plus
2R 6999246..6999410 1018..1182 100 -> Plus
2R 6999483..6999844 1183..1544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:05:49 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6998165..6999181 1..1017 100 -> Plus
2R 6999246..6999410 1018..1182 100 -> Plus
2R 6999483..6999844 1183..1544 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:01:32 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2886988..2887349 1183..1544 99   Plus
arm_2R 2885670..2886686 1..1017 100 -> Plus
arm_2R 2886751..2886915 1018..1182 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:44 Download gff for GH04835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6999364..7000380 1..1017 100 -> Plus
2R 7000445..7000609 1018..1182 100 -> Plus
2R 7000682..7001043 1183..1544 99   Plus

GH04835.pep Sequence

Translation from 765 to 1433

> GH04835.pep
MNCLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQ
TIPICIIVIGSVTFVVAFFGCCGTIRENACCTTIYAICMLILFGLQLALS
IWIFAANDKFLSSMGKAVDKAWDENNAAQGYPMDALQLAFSCCGNTGYQQ
YETVPSSCCGYKDRTKVCEAEIYSQRPGCRQEFVDFWASNTDLIRWSSLI
IALFELGIFIMSCCLASAMRKR*

GH04835.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12679-PA 223 GF12679-PA 1..223 1..222 1056 89.2 Plus
Dana\GF12680-PA 228 GF12680-PA 1..222 1..222 517 45.8 Plus
Dana\GF13154-PA 226 GF13154-PA 1..219 1..221 434 39.7 Plus
Dana\GF12681-PA 228 GF12681-PA 1..221 1..221 394 37.2 Plus
Dana\GF12682-PA 227 GF12682-PA 1..220 1..221 344 35.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23241-PA 222 GG23241-PA 1..222 1..222 1105 92.8 Plus
Dere\GG23242-PA 232 GG23242-PA 1..224 1..222 499 42.3 Plus
Dere\GG23240-PA 226 GG23240-PA 1..219 1..221 389 37.1 Plus
Dere\GG10779-PA 227 GG10779-PA 1..220 1..221 386 36.9 Plus
Dere\GG23243-PA 228 GG23243-PA 1..221 1..221 305 33.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21496-PA 223 GH21496-PA 1..223 1..222 753 64.1 Plus
Dgri\GH21495-PA 223 GH21495-PA 1..223 1..222 747 64.1 Plus
Dgri\GH21497-PA 235 GH21497-PA 1..226 1..221 523 46.9 Plus
Dgri\GH21494-PA 226 GH21494-PA 1..219 1..221 437 39.3 Plus
Dgri\GH21498-PA 227 GH21498-PA 1..220 1..221 370 36.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-PA 222 CG30160-PA 1..222 1..222 1177 100 Plus
Tsp42Eb-PB 222 CG18816-PB 1..222 1..222 1177 100 Plus
Tsp42Ec-PA 232 CG12847-PA 1..224 1..222 513 41.9 Plus
Tsp42Ea-PC 226 CG18817-PC 1..218 1..220 454 39 Plus
Tsp42Ea-PB 226 CG18817-PB 1..218 1..220 454 39 Plus
Tsp42Ea-PA 226 CG18817-PA 1..218 1..220 454 39 Plus
Tsp42Ed-PB 227 CG12846-PB 1..219 1..220 412 38.5 Plus
Tsp42Ed-PA 227 CG12846-PA 1..219 1..220 412 38.5 Plus
Tsp42Ee-PB 228 CG10106-PB 1..220 1..220 336 33 Plus
Tsp42Ee-PA 228 CG10106-PA 1..220 1..220 336 33 Plus
Tsp39D-PB 235 CG8666-PB 10..230 9..221 224 23.4 Plus
Tsp29Fa-PC 248 CG9494-PC 12..241 9..222 217 28.1 Plus
Tsp29Fa-PB 248 CG9494-PB 12..241 9..222 217 28.1 Plus
Tsp29Fa-PA 248 CG9494-PA 12..241 9..222 217 28.1 Plus
Tsp42El-PA 217 CG12840-PA 1..205 1..216 208 28.3 Plus
Tsp47F-PB 239 CG9033-PB 3..235 2..221 199 22.6 Plus
Tsp42Ef-PA 220 CG12845-PA 17..212 11..220 197 27.6 Plus
Tsp29Fb-PC 308 CG9496-PC 16..248 9..221 182 23.3 Plus
Tsp29Fb-PA 308 CG9496-PA 16..248 9..221 182 23.3 Plus
Tsp29Fb-PB 308 CG9496-PB 16..248 9..221 182 23.3 Plus
Tsp3A-PB 304 CG10742-PB 39..288 4..212 181 27.6 Plus
Tsp3A-PA 304 CG10742-PA 39..288 4..212 181 27.6 Plus
Tsp42Eg-PA 218 CG12142-PA 1..209 1..222 179 22.9 Plus
Tsp42Eh-PB 231 CG12844-PB 1..221 1..220 179 22.8 Plus
Tsp86D-PB 291 CG4591-PB 27..207 4..159 179 27.7 Plus
Tsp86D-PA 291 CG4591-PA 27..207 4..159 179 27.7 Plus
Tsp86D-PC 316 CG4591-PC 27..207 4..159 179 27.7 Plus
Tsp96F-PC 268 CG6120-PC 3..264 1..222 171 24.8 Plus
Tsp96F-PA 268 CG6120-PA 3..264 1..222 171 24.8 Plus
Tsp96F-PB 284 CG6120-PB 3..264 1..222 171 24.8 Plus
Tsp42Ek-PB 215 CG12841-PB 1..156 1..163 167 28.9 Plus
Tsp42Ek-PA 215 CG12841-PA 1..156 1..163 167 28.9 Plus
Tsp42Er-PA 211 CG12837-PA 7..203 7..220 165 25.6 Plus
Tsp42Ei-PB 229 CG12843-PB 9..184 9..186 146 26.6 Plus
Tsp42Ei-PA 229 CG12843-PA 9..184 9..186 146 26.6 Plus
lbm-PB 208 CG2374-PB 8..202 18..222 144 26.3 Plus
lbm-PA 208 CG2374-PA 8..202 18..222 144 26.3 Plus
Tsp42En-PB 218 CG12839-PB 1..200 1..207 143 27.9 Plus
Tsp42En-PA 218 CG12839-PA 1..200 1..207 143 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19465-PA 223 GI19465-PA 1..223 1..222 809 67.3 Plus
Dmoj\GI19466-PA 230 GI19466-PA 1..226 1..222 591 48.2 Plus
Dmoj\GI19464-PA 226 GI19464-PA 1..219 1..221 449 40.2 Plus
Dmoj\GI19468-PA 227 GI19468-PA 1..221 1..222 379 35.9 Plus
Dmoj\GI19469-PA 231 GI19469-PA 1..224 1..221 360 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11134-PA 162 GL11134-PA 1..162 7..222 530 60.8 Plus
Dper\GL11135-PA 229 GL11135-PA 1..221 1..222 522 45.1 Plus
Dper\GL11133-PA 226 GL11133-PA 1..219 1..221 436 39.7 Plus
Dper\GL11136-PA 227 GL11136-PA 1..220 1..221 385 36.5 Plus
Dper\GL11138-PA 252 GL11138-PA 1..245 1..221 339 33.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15688-PA 223 GA15688-PA 1..223 1..222 945 85.7 Plus
Dpse\GA11852-PA 229 GA11852-PA 1..221 1..222 519 45.1 Plus
Dpse\GA15095-PA 226 GA15095-PA 1..219 1..221 436 39.7 Plus
Dpse\GA11851-PA 227 GA11851-PA 1..220 1..221 384 36.5 Plus
Dpse\GA10076-PA 228 GA10076-PA 1..221 1..221 367 36.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20913-PA 222 GM20913-PA 1..222 1..222 1135 96.8 Plus
Dsec\GM20914-PA 232 GM20914-PA 1..224 1..222 516 44.1 Plus
Dsec\GM20912-PA 226 GM20912-PA 1..218 1..220 417 39.5 Plus
Dsec\GM20827-PA 227 GM20827-PA 1..220 1..221 400 39.2 Plus
Dsec\GM20915-PA 228 GM20915-PA 1..221 1..221 289 34.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10442-PA 222 GD10442-PA 1..222 1..222 1139 97.3 Plus
Dsim\GD10443-PA 232 GD10443-PA 1..224 1..222 509 43.6 Plus
Dsim\GD10441-PA 226 GD10441-PA 1..218 1..220 417 39.5 Plus
Dsim\GD10280-PA 227 GD10280-PA 1..220 1..221 396 38.7 Plus
Dsim\GD10444-PA 228 GD10444-PA 1..221 1..221 289 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15125-PA 222 GJ15125-PA 1..222 1..222 749 71.2 Plus
Dvir\GJ15126-PA 231 GJ15126-PA 1..222 1..221 525 48.6 Plus
Dvir\GJ15124-PA 226 GJ15124-PA 1..219 1..221 443 39.3 Plus
Dvir\GJ15127-PA 227 GJ15127-PA 1..221 1..222 390 37.2 Plus
Dvir\GJ15128-PA 230 GJ15128-PA 1..223 1..221 332 36.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21772-PA 222 GK21772-PA 1..222 1..222 932 77.5 Plus
Dwil\GK21773-PA 233 GK21773-PA 1..225 1..221 470 40 Plus
Dwil\GK21771-PA 226 GK21771-PA 1..219 1..221 455 39.7 Plus
Dwil\GK21774-PA 178 GK21774-PA 1..178 1..176 425 45.5 Plus
Dwil\GK21775-PA 229 GK21775-PA 1..223 1..222 395 39.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19091-PA 222 GE19091-PA 1..222 1..222 1110 93.7 Plus
Dyak\GE19092-PA 232 GE19092-PA 1..224 1..222 483 41.9 Plus
Dyak\GE19090-PA 226 GE19090-PA 1..219 1..221 425 39.7 Plus
Dyak\Tsp42Ed-PA 227 GE24279-PA 1..220 1..221 395 37.8 Plus
Dyak\Tsp42Ee-PA 228 GE19093-PA 1..221 1..221 296 33 Plus

GH04835.hyp Sequence

Translation from 765 to 1433

> GH04835.hyp
MNCLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQ
TIPICIIVIGSVTFVVAFFGCCGTIRENACCTTIYAICMLILFGLQLALS
IWIFAANDKFLSSMGKAVDKAWDENNAAQGYPMDALQLAFSCCGNTGYQQ
YETVPSSCCGYKDRTKVCEAEIYSQRPGCRQEFVDFWASNTDLIRWSSLI
IALFELGIFIMSCCLASAMRKR*

GH04835.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-PA 222 CG30160-PA 1..222 1..222 1177 100 Plus
Tsp42Eb-PB 222 CG18816-PB 1..222 1..222 1177 100 Plus
Tsp42Ec-PA 232 CG12847-PA 1..224 1..222 513 41.9 Plus
Tsp42Ea-PC 226 CG18817-PC 1..218 1..220 454 39 Plus
Tsp42Ea-PB 226 CG18817-PB 1..218 1..220 454 39 Plus