Clone GH04846 Report

Search the DGRC for GH04846

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:48
Well:46
Vector:pOT2
Associated Gene/TranscriptRagA-B-RA
Protein status:GH04846.pep: gold
Preliminary Size:1497
Sequenced Size:1407

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11968 2001-01-01 Release 2 assignment
CG11968 2001-07-04 Blastp of sequenced clone
CG11968 2003-01-01 Sim4 clustering to Release 3
CG11968 2008-04-29 Release 5.5 accounting
CG11968 2008-08-15 Release 5.9 accounting
CG11968 2008-12-18 5.12 accounting

Clone Sequence Records

GH04846.complete Sequence

1407 bp (1407 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047538

> GH04846.complete
CACTAACCCAGCCTATTATTTGTTTTTATTGTTGATTATTTTCCTGGAGA
TCTAAAAAACCAGCGGCACAATGAAGAAAAAGGTGTTACTGATGGGGAAG
AGCGGATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATAT
CGCCCGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCC
ATGTGCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGT
CAGGAGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTT
TCGTAATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGA
TAGAGCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAG
AATTCGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGT
GCCGGAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCA
TAAAATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGG
GATGAAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACC
AAATGTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTG
AGGCGGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCC
CATTGCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTC
CAACATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGT
TCCAATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACC
TTCACCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCC
CTCGGAGGCTACGCTAGTCAACATAAGGAACGCTCGGAAGTACTTTGAGG
AGCTGGAAAATCCAAGCAACAGTGCCATTAACCATCATGGCCAAAGGTAC
CATTGATGATAGTCAAACGAGAATTGTTGTTTTCCATAACTCCATTTGCC
GTTCTCCGTTCAAAAAGACATGAATACCGTCTGTTGTTTTGCAAACATCG
AAGCGCCCAAGGTGCCGCCCCAAAGTCTTACAGCTTCCCGTAACTATAAA
TACGTATATATGTTTTTTATCGCTCACTTCCTTCATGACTGCCATAATAG
TTAATGGTGTAATTGTAAATATGGCAGTCCCACATACATAATAGCTTTCT
TGAGTTGTGAAGGTCGTAGTGAGTGAGCGATGGATAGCCATCTCCTTCGT
TGATTTTTCGTAGATTTGTAAGTTTAAACCTTTGTAGGCCTTAAGTTTAT
ATACAAAAACAATTACACACTTATAAATACGAAAAACAAAAAAAAAAAAA
AAAAAAA

GH04846.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-RA 1516 RagA-RA 60..1448 1..1389 6945 100 Plus
CG11967-RA 1284 CG11967-RA 1088..1284 1389..1193 985 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4808625..4809441 1387..568 4005 99.5 Minus
chr3R 27901430 chr3R 4809503..4809887 567..183 1925 100 Minus
chr3R 27901430 chr3R 4809945..4810046 182..81 510 100 Minus
chr3R 27901430 chr3R 4810099..4810184 86..1 430 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8982730..8983551 1389..568 4110 100 Minus
3R 32079331 3R 8983613..8983997 567..183 1925 100 Minus
3R 32079331 3R 8984055..8984156 182..81 510 100 Minus
3R 32079331 3R 8984209..8984294 86..1 430 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8723561..8724382 1389..568 4110 100 Minus
3R 31820162 3R 8724444..8724828 567..183 1925 100 Minus
3R 31820162 3R 8724886..8724987 182..81 510 100 Minus
3R 31820162 3R 8725040..8725125 86..1 430 100 Minus
Blast to na_te.dros performed 2019-03-15 21:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6446..6622 1361..1194 124 57.3 Minus
Ivk 5402 Ivk IVK 5402bp 1797..1848 1189..1240 116 69.2 Plus

GH04846.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:32:05 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4808625..4809441 568..1387 99 <- Minus
chr3R 4809503..4809887 183..567 100 <- Minus
chr3R 4809945..4810044 83..182 100 <- Minus
chr3R 4810103..4810184 1..82 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:15:59 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 1..936 71..1006 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:34 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-RA 1..936 71..1006 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:50:56 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 1..936 71..1006 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:01 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 1..936 71..1006 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:03 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 1..936 71..1006 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:03 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 14..1400 1..1387 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:34 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-RA 14..1400 1..1387 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:50:56 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 14..1400 1..1387 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:01 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 14..1400 1..1387 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:03 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 22..1408 1..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:05 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8982732..8983551 568..1387 100 <- Minus
3R 8983613..8983997 183..567 100 <- Minus
3R 8984055..8984154 83..182 100 <- Minus
3R 8984213..8984294 1..82 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:05 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8982732..8983551 568..1387 100 <- Minus
3R 8983613..8983997 183..567 100 <- Minus
3R 8984055..8984154 83..182 100 <- Minus
3R 8984213..8984294 1..82 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:05 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8982732..8983551 568..1387 100 <- Minus
3R 8983613..8983997 183..567 100 <- Minus
3R 8984055..8984154 83..182 100 <- Minus
3R 8984213..8984294 1..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:50:56 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4808454..4809273 568..1387 100 <- Minus
arm_3R 4809335..4809719 183..567 100 <- Minus
arm_3R 4809777..4809876 83..182 100 <- Minus
arm_3R 4809935..4810016 1..82 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:01 Download gff for GH04846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8723563..8724382 568..1387 100 <- Minus
3R 8724444..8724828 183..567 100 <- Minus
3R 8724886..8724985 83..182 100 <- Minus
3R 8725044..8725125 1..82 100   Minus

GH04846.pep Sequence

Translation from 70 to 1005

> GH04846.pep
MKKKVLLMGKSGSGKTSMRSIIFANYIARDTTRLGATIDVEHSHVRFLGN
LVLNLWDCGGQEGFMKQYFAQQRDNIFRNVEVLIYVFDVESQEIERDIHY
YQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERMEDLIKLSKPG
NVTCFRTSIWDETLYKAWSSIVTMLIPNVAALENSVTHFGNVIEADEVLL
FEKATFLVISHCQSKKNRDSHRFEKVSNIIKQFKLSCSKLGAKFQSMEVR
NSAFAAFIDTFTSNTYVMVVMSDPTLPSEATLVNIRNARKYFEELENPSN
SAINHHGQRYH*

GH04846.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17274-PA 311 GF17274-PA 1..311 1..311 1604 94.9 Plus
Dana\GF11205-PA 387 GF11205-PA 40..229 2..189 159 26.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17406-PA 311 GG17406-PA 1..311 1..311 1659 98.4 Plus
Dere\GG10668-PA 385 GG10668-PA 40..250 2..210 158 25.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18582-PA 311 GH18582-PA 1..311 1..311 1536 90.4 Plus
Dgri\GH19979-PA 389 GH19979-PA 40..229 2..189 167 26.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-PA 311 CG11968-PA 1..311 1..311 1607 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24512-PA 311 GI24512-PA 1..311 1..311 1507 89.4 Plus
Dmoj\GI20265-PA 393 GI20265-PA 46..256 2..210 192 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21660-PA 311 GL21660-PA 1..311 1..311 1565 92.9 Plus
Dper\GL17373-PA 349 GL17373-PA 12..201 2..189 158 26.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11302-PA 311 GA11302-PA 1..311 1..311 1563 92.6 Plus
Dpse\GA21270-PA 349 GA21270-PA 12..201 2..189 158 26.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26296-PA 311 GM26296-PA 1..311 1..311 1665 99 Plus
Dsec\GM20713-PA 412 GM20713-PA 67..277 2..210 160 25.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20832-PA 311 GD20832-PA 1..311 1..311 1665 99 Plus
Dsim\GD10180-PA 412 GD10180-PA 67..277 2..210 160 25.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22685-PA 311 GJ22685-PA 1..311 1..311 1535 91 Plus
Dvir\GJ20218-PA 389 GJ20218-PA 40..250 2..210 176 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25677-PA 306 GK25677-PA 1..305 1..308 1511 92.2 Plus
Dwil\GK23039-PA 369 GK23039-PA 36..246 2..210 169 25.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24810-PA 311 GE24810-PA 1..311 1..311 1659 98.7 Plus

GH04846.hyp Sequence

Translation from 70 to 1005

> GH04846.hyp
MKKKVLLMGKSGSGKTSMRSIIFANYIARDTTRLGATIDVEHSHVRFLGN
LVLNLWDCGGQEGFMKQYFAQQRDNIFRNVEVLIYVFDVESQEIERDIHY
YQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERMEDLIKLSKPG
NVTCFRTSIWDETLYKAWSSIVTMLIPNVAALENSVTHFGNVIEADEVLL
FEKATFLVISHCQSKKNRDSHRFEKVSNIIKQFKLSCSKLGAKFQSMEVR
NSAFAAFIDTFTSNTYVMVVMSDPTLPSEATLVNIRNARKYFEELENPSN
SAINHHGQRYH*

GH04846.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-PA 311 CG11968-PA 1..311 1..311 1607 100 Plus