Clone GH04863 Report

Search the DGRC for GH04863

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:48
Well:63
Vector:pOT2
Associated Gene/TranscriptCG14997-RA
Protein status:GH04863.pep: gold
Preliminary Size:1300
Sequenced Size:1604

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14997 2001-01-01 Release 2 assignment
CG14997 2002-07-14 Blastp of sequenced clone
CG14997 2003-01-01 Sim4 clustering to Release 3
CG14997 2008-04-29 Release 5.5 accounting
CG14997 2008-08-15 Release 5.9 accounting
CG14997 2008-12-18 5.12 accounting

Clone Sequence Records

GH04863.complete Sequence

1604 bp (1604 high quality bases) assembled on 2002-07-14

GenBank Submission: BT001388

> GH04863.complete
GCACTTGCAGTCCGTTTTGTTTTTCTTTAACGCAGATTGAGGGATCGAAG
ATCATCCAGCTGTTGCGATGAACCGTCGCCTTCCAGGAACCATCAGCCAG
TGCCAGAAGCTTCTCCTAGCCACCCACAACCATGCTCCAACGGCCTTCTC
CACCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAATGCC
AAGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGCCAAG
TTGTCCTCACGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACCGGAAGA
TAAACATTACTACCAACCCATGTTCACCCTAATAGGAGGTGGTATGAAGA
GATTGGATCAGAGCCACCGCCAAATGGCCGATGTGCTGCCCACAAAGGCC
AAATGGGTGAAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAATACGGT
TAGCACTTCTGGTGGCAAGACCATCAAGTACGACTTCCTGATCATCGCCA
CCGGACTGCAGCTCAATTATGGAAAGATACCTGGCCTGGTGGAGGCCCTG
GAGACCCCCGACAGTAATGTTTGCTCCATCTACTCGCCCAAGTACGTGGA
TCATGTGTACGAATGTCTGCGCAGGACCAACAAAGGAAATGCTATATTCA
CGTTTCCCAATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAAATCGCC
TATATATCTGAGCACTACTTTAGGAAGATGGGTCGTCGCGACAACGTCAA
TATCATCTACAATACATCGCTTCCCGTGATTTTTGGTGTTAAGCATTACG
CAGAGGCCCTGATGAAACTGATCAAGAGGAGAAATATCACGCTTAATGTT
CAAAGAAATCTCGTTGAAGTGAGACATAAAGATAATATAGCCGTGTTCGA
GGATCTCGCCAAACCAGGAGTTCACTATGAGGAAACGTACTCCATGCTTC
ATGTGACTCCGCCGATGAGCACTCCGGATGTGGTGGCCAACTGCAAGAAA
CTGGTAACCCCCACTGGCTTTGTGGACGTCGACCAGTTGACGCTGCAGCA
CAACAAGTACAGCAACGTGTTCGCCATCGGCGATTCGGCGTCCAGTCCCA
ACTCGAAGACGGCCGCGGCGGCAGCCGCCCAATCACCGGTTGTGTTCAAA
AACGTAATGGCGGCGATCGAGGGCAAAGCCCCAACGGATATCTACGATGG
ATACTCGTCCTGCCCCATCGTCACCGGCTACAGCTCCTGCATCCTGGCTG
AGTTTGATTACAACCTCACCCCCGTGGAGACCTTTCCATTGGACCAGTCC
AAGGAGAGGTACTCCATGTTCTTTATGAAGAAGGAGCTGATGCCGGTGCT
CTACTGGAAGCTGATGATGAACGGCTACTGGAACGGACCGGCACTAATGC
GGAAAATTTTCTCAGTGCTAAAGTTTAATAAAAAGCAATAGGGACCTCAA
ATGATCTTTAATTAATTTTAAAAGAATATTTGGCATCATCATAACCATTC
CATACCTTAATATCATACTAATTTATAAACATTGTACTTTTAATTTGGTA
TGTGAGATCATAAATAAAAGTATTAAATTAGTTTAAAAAAAAAAAAAAAA
AAAA

GH04863.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1802 CG14997-RA 219..1802 1..1584 7920 100 Plus
CG14997-RB 1676 CG14997-RB 102..1676 10..1584 7875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4241527..4241989 1122..1584 2315 100 Plus
chr3L 24539361 chr3L 4240338..4240566 302..530 1130 99.6 Plus
chr3L 24539361 chr3L 4240878..4241089 726..937 1060 100 Plus
chr3L 24539361 chr3L 4240619..4240821 525..727 1015 100 Plus
chr3L 24539361 chr3L 4239715..4239909 1..195 975 100 Plus
chr3L 24539361 chr3L 4241289..4241476 937..1124 940 100 Plus
chr3L 24539361 chr3L 4240172..4240277 196..301 530 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4242141..4242607 1122..1588 2335 100 Plus
3L 28110227 3L 4240952..4241180 302..530 1130 99.6 Plus
3L 28110227 3L 4241492..4241703 726..937 1060 100 Plus
3L 28110227 3L 4241233..4241435 525..727 1015 100 Plus
3L 28110227 3L 4240329..4240523 1..195 975 100 Plus
3L 28110227 3L 4241903..4242090 937..1124 940 100 Plus
3L 28110227 3L 4240786..4240891 196..301 530 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4242141..4242607 1122..1588 2335 100 Plus
3L 28103327 3L 4240952..4241180 302..530 1130 99.5 Plus
3L 28103327 3L 4241492..4241703 726..937 1060 100 Plus
3L 28103327 3L 4241233..4241435 525..727 1015 100 Plus
3L 28103327 3L 4240329..4240523 1..195 975 100 Plus
3L 28103327 3L 4241903..4242090 937..1124 940 100 Plus
3L 28103327 3L 4240786..4240891 196..301 530 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:18:23 has no hits.

GH04863.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:19:03 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4239715..4239909 1..195 100 -> Plus
chr3L 4240172..4240277 196..301 100 -> Plus
chr3L 4240338..4240562 302..526 100 -> Plus
chr3L 4240621..4240821 527..727 100 -> Plus
chr3L 4240880..4241089 728..937 100 -> Plus
chr3L 4241290..4241476 938..1124 100 -> Plus
chr3L 4241530..4241989 1125..1584 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:16:08 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 1..1374 68..1441 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:16:40 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 1..1374 68..1441 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:43 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 1..1374 68..1441 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:07:53 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 1..1374 68..1441 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:41 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 1..1374 68..1441 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:40:43 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 21..1604 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:16:40 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 21..1604 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:43 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 22..1605 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:07:53 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 21..1604 1..1584 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:41 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 22..1605 1..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:03 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4241235..4241435 527..727 100 -> Plus
3L 4240952..4241176 302..526 100 -> Plus
3L 4240329..4240523 1..195 100 -> Plus
3L 4240786..4240891 196..301 100 -> Plus
3L 4241494..4241703 728..937 100 -> Plus
3L 4241904..4242090 938..1124 100 -> Plus
3L 4242144..4242603 1125..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:03 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4241235..4241435 527..727 100 -> Plus
3L 4240952..4241176 302..526 100 -> Plus
3L 4240329..4240523 1..195 100 -> Plus
3L 4240786..4240891 196..301 100 -> Plus
3L 4241494..4241703 728..937 100 -> Plus
3L 4241904..4242090 938..1124 100 -> Plus
3L 4242144..4242603 1125..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:03 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4241235..4241435 527..727 100 -> Plus
3L 4240952..4241176 302..526 100 -> Plus
3L 4240329..4240523 1..195 100 -> Plus
3L 4240786..4240891 196..301 100 -> Plus
3L 4241494..4241703 728..937 100 -> Plus
3L 4241904..4242090 938..1124 100 -> Plus
3L 4242144..4242603 1125..1584 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:43 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4241904..4242090 938..1124 100 -> Plus
arm_3L 4240329..4240523 1..195 100 -> Plus
arm_3L 4240786..4240891 196..301 100 -> Plus
arm_3L 4240952..4241176 302..526 100 -> Plus
arm_3L 4241235..4241435 527..727 100 -> Plus
arm_3L 4241494..4241703 728..937 100 -> Plus
arm_3L 4242144..4242603 1125..1584 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:39:43 Download gff for GH04863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4240952..4241176 302..526 100 -> Plus
3L 4241235..4241435 527..727 100 -> Plus
3L 4241494..4241703 728..937 100 -> Plus
3L 4241904..4242090 938..1124 100 -> Plus
3L 4242144..4242603 1125..1584 100   Plus
3L 4240329..4240523 1..195 100 -> Plus
3L 4240786..4240891 196..301 100 -> Plus

GH04863.pep Sequence

Translation from 67 to 1440

> GH04863.pep
MNRRLPGTISQCQKLLLATHNHAPTAFSTRFLSTSRVNRERQECQVLVVG
GGTGGCAMAAKLSSRLGSDKVVVLEPEDKHYYQPMFTLIGGGMKRLDQSH
RQMADVLPTKAKWVKEKALEFDPDNNTVSTSGGKTIKYDFLIIATGLQLN
YGKIPGLVEALETPDSNVCSIYSPKYVDHVYECLRRTNKGNAIFTFPNCP
IKCAGAPQKIAYISEHYFRKMGRRDNVNIIYNTSLPVIFGVKHYAEALMK
LIKRRNITLNVQRNLVEVRHKDNIAVFEDLAKPGVHYEETYSMLHVTPPM
STPDVVANCKKLVTPTGFVDVDQLTLQHNKYSNVFAIGDSASSPNSKTAA
AAAAQSPVVFKNVMAAIEGKAPTDIYDGYSSCPIVTGYSSCILAEFDYNL
TPVETFPLDQSKERYSMFFMKKELMPVLYWKLMMNGYWNGPALMRKIFSV
LKFNKKQ*

GH04863.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10566-PA 459 GF10566-PA 1..458 1..455 1807 74.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15208-PA 457 GG15208-PA 1..456 1..456 2282 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15540-PA 447 GH15540-PA 21..447 30..456 1598 67.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-PA 457 CG14997-PA 1..457 1..457 2403 100 Plus
CG14997-PB 457 CG14997-PB 1..457 1..457 2403 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16584-PA 454 GI16584-PA 7..454 5..455 1595 66.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12839-PA 457 GL12839-PA 1..457 1..456 1689 70.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13414-PA 457 GA13414-PA 1..457 1..456 1685 70.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14637-PA 457 GM14637-PA 1..457 1..457 2438 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13825-PA 457 GD13825-PA 1..457 1..457 2441 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12836-PA 455 GJ12836-PA 7..455 5..456 1625 66.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10182-PA 445 GK10182-PA 19..445 30..457 1571 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21427-PA 456 GE21427-PA 1..456 1..456 2404 96.5 Plus

GH04863.hyp Sequence

Translation from 67 to 1440

> GH04863.hyp
MNRRLPGTISQCQKLLLATHNHAPTAFSTRFLSTSRVNRERQECQVLVVG
GGTGGCAMAAKLSSRLGSDKVVVLEPEDKHYYQPMFTLIGGGMKRLDQSH
RQMADVLPTKAKWVKEKALEFDPDNNTVSTSGGKTIKYDFLIIATGLQLN
YGKIPGLVEALETPDSNVCSIYSPKYVDHVYECLRRTNKGNAIFTFPNCP
IKCAGAPQKIAYISEHYFRKMGRRDNVNIIYNTSLPVIFGVKHYAEALMK
LIKRRNITLNVQRNLVEVRHKDNIAVFEDLAKPGVHYEETYSMLHVTPPM
STPDVVANCKKLVTPTGFVDVDQLTLQHNKYSNVFAIGDSASSPNSKTAA
AAAAQSPVVFKNVMAAIEGKAPTDIYDGYSSCPIVTGYSSCILAEFDYNL
TPVETFPLDQSKERYSMFFMKKELMPVLYWKLMMNGYWNGPALMRKIFSV
LKFNKKQ*

GH04863.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-PA 457 CG14997-PA 1..457 1..457 2403 100 Plus
CG14997-PB 457 CG14997-PB 1..457 1..457 2403 100 Plus