BDGP Sequence Production Resources |
Search the DGRC for GH04877
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 48 |
Well: | 77 |
Vector: | pOT2 |
Associated Gene/Transcript | rtp-RA |
Protein status: | GH04877.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 943 |
Gene | Date | Evidence |
---|---|---|
CG10233 | 2001-01-01 | Release 2 assignment |
CG10233 | 2001-10-10 | Blastp of sequenced clone |
CG10233 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10233 | 2008-04-29 | Release 5.5 accounting |
CG10233 | 2008-08-15 | Release 5.9 accounting |
CG10233 | 2008-12-18 | 5.12 accounting |
943 bp (943 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060630
> GH04877.complete CGGTAGCGGAGCAATGGCCATGGACGACTACGATGATGACATGAGCAGCG TGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCCCAC CAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCAGTA CAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCAGTC GCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGGCAT CTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGGTCT TAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACGAAG GCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGAGCC GATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGGCCT GGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACGAGG GATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAGGTG GTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGAACA CCCATACTGAACAGACACTTCAGATTGGTTACCGGTTGGTATTGATAAAC ACGTACAGTTTAAAAATACAAATTTTGGTAACCGACTGTAAGAGTCTCAA GTCATAAAACAGAAAAAGGTGCCTTTAAGAAAAGAAATAAGCATTTCTTT CTTAACATCTTAAACTTTAATACATTTGCGCATAAACGTTCGTAAATGTG TCTAAGTAATATAAAATGCATACAATTTCGCGTTTACTTTATAATTTTGC TTTTTCCAAATTCTTTATCAAAAATTCTTCAACGCACCCTAATAAAAACA ACAAGAAAATTATGAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
retinophilin-RA | 1108 | retinophilin-RA | 117..1035 | 1..919 | 4550 | 99.6 | Plus |
retinophilin.a | 455 | retinophilin.a | 45..455 | 1..407 | 1970 | 99 | Plus |
retinophilin-RB | 509 | retinophilin-RB | 45..386 | 1..342 | 1710 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1061756..1062330 | 917..343 | 2830 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 1062537..1062837 | 342..42 | 1505 | 100 | Minus |
chr3R | 27901430 | chr3R | 1062896..1062936 | 41..1 | 205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1061756..1062330 | 343..917 | 99 | <- | Minus |
chr3R | 1062537..1062837 | 42..342 | 100 | <- | Minus |
chr3R | 1062896..1062936 | 1..41 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinophilin-RA | 1..597 | 14..610 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtp-RA | 1..597 | 14..610 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtp-RA | 1..597 | 14..610 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinophilin-RA | 1..597 | 14..610 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtp-RA | 1..597 | 14..610 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinophilin-RA | 45..961 | 1..917 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtp-RA | 44..960 | 1..917 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtp-RA | 44..960 | 1..917 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinophilin-RA | 45..961 | 1..917 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtp-RA | 44..960 | 1..917 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5236092..5236666 | 343..917 | 99 | <- | Minus |
3R | 5236873..5237173 | 42..342 | 100 | <- | Minus |
3R | 5237232..5237272 | 1..41 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5236092..5236666 | 343..917 | 99 | <- | Minus |
3R | 5236873..5237173 | 42..342 | 100 | <- | Minus |
3R | 5237232..5237272 | 1..41 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5236092..5236666 | 343..917 | 99 | <- | Minus |
3R | 5236873..5237173 | 42..342 | 100 | <- | Minus |
3R | 5237232..5237272 | 1..41 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1061814..1062388 | 343..917 | 99 | <- | Minus |
arm_3R | 1062595..1062895 | 42..342 | 100 | <- | Minus |
arm_3R | 1062954..1062994 | 1..41 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4976923..4977497 | 343..917 | 99 | <- | Minus |
3R | 4977704..4978004 | 42..342 | 100 | <- | Minus |
3R | 4978063..4978103 | 1..41 | 100 | Minus |
Translation from 1 to 609
> GH04877.hyp GSGAMAMDDYDDDMSSVGVTTARIENQHQQHPHQQGQHGHHQQGQGQSQY SAGAVKVGGWRYEDASRYIGEWNQRGQKHGIGHLQFADGTRYDGQFQEGL SQGVGCLWFADGAKYEGEFHQGWFHGNGIFWRADGMKYEGEFRGGKIWGL GLLTFQDFTHGFPRNEGFFQDCRFMRRRRCPEVVQRAQKCALMARSQCEH PY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rtp-PA | 198 | CG10233-PA | 1..198 | 5..202 | 1127 | 100 | Plus |
CG14490-PA | 197 | CG14490-PA | 15..170 | 29..162 | 161 | 32.5 | Plus |
CG5458-PA | 344 | CG5458-PA | 33..143 | 51..161 | 159 | 33 | Plus |
CG5458-PA | 344 | CG5458-PA | 27..110 | 68..151 | 155 | 39.3 | Plus |
jp-PE | 1054 | CG4405-PE | 1..196 | 14..158 | 155 | 27.1 | Plus |
jp-PD | 1054 | CG4405-PD | 1..196 | 14..158 | 155 | 27.1 | Plus |
Translation from 13 to 609
> GH04877.pep MAMDDYDDDMSSVGVTTARIENQHQQHPHQQGQHGHHQQGQGQSQYSAGA VKVGGWRYEDASRYIGEWNQRGQKHGIGHLQFADGTRYDGQFQEGLSQGV GCLWFADGAKYEGEFHQGWFHGNGIFWRADGMKYEGEFRGGKIWGLGLLT FQDFTHGFPRNEGFFQDCRFMRRRRCPEVVQRAQKCALMARSQCEHPY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16068-PA | 200 | GF16068-PA | 1..200 | 1..198 | 999 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11144-PA | 198 | GG11144-PA | 1..198 | 1..198 | 1038 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22742-PA | 195 | GH22742-PA | 11..195 | 11..198 | 829 | 87.2 | Plus |
Dgri\GH11395-PA | 341 | GH11395-PA | 26..102 | 63..139 | 152 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rtp-PA | 198 | CG10233-PA | 1..198 | 1..198 | 1127 | 100 | Plus |
CG14490-PA | 197 | CG14490-PA | 15..170 | 25..158 | 161 | 32.5 | Plus |
CG5458-PA | 344 | CG5458-PA | 33..143 | 47..157 | 159 | 33 | Plus |
CG5458-PA | 344 | CG5458-PA | 27..110 | 64..147 | 155 | 39.3 | Plus |
jp-PE | 1054 | CG4405-PE | 1..196 | 10..154 | 155 | 27.1 | Plus |
jp-PD | 1054 | CG4405-PD | 1..196 | 10..154 | 155 | 27.1 | Plus |
jp-PA | 1054 | CG4405-PA | 1..196 | 10..154 | 155 | 27.1 | Plus |
jp-PB | 1054 | CG4405-PB | 1..196 | 10..154 | 155 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10217-PA | 190 | GI10217-PA | 11..190 | 11..198 | 811 | 86.7 | Plus |
Dmoj\GI18099-PA | 348 | GI18099-PA | 26..102 | 63..139 | 142 | 41.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22197-PA | 234 | GL22197-PA | 38..234 | 1..198 | 984 | 95.5 | Plus |
Dper\GL16824-PA | 305 | GL16824-PA | 113..181 | 58..127 | 142 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10177-PA | 232 | GA10177-PA | 38..232 | 1..198 | 979 | 95.5 | Plus |
Dpse\GA15841-PA | 305 | GA15841-PA | 113..181 | 58..127 | 143 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10655-PA | 198 | GM10655-PA | 1..198 | 1..198 | 1037 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19636-PA | 198 | GD19636-PA | 1..198 | 1..198 | 1037 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11018-PA | 187 | GJ11018-PA | 1..187 | 1..198 | 840 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14288-PA | 203 | GK14288-PA | 15..203 | 13..198 | 793 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25303-PA | 198 | GE25303-PA | 11..198 | 11..198 | 878 | 95.7 | Plus |