Clone GH04896 Report

Search the DGRC for GH04896

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:48
Well:96
Vector:pOT2
Associated Gene/TranscriptCG30008-RA
Protein status:GH04896.pep: gold
Preliminary Size:1076
Sequenced Size:943

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12138 2001-01-01 Release 2 assignment
CG30008 2002-03-19 Blastp of sequenced clone
CG30008 2003-01-01 Sim4 clustering to Release 3
CG30008 2008-04-29 Release 5.5 accounting
CG30008 2008-08-15 Release 5.9 accounting
CG30008 2008-12-18 5.12 accounting

Clone Sequence Records

GH04896.complete Sequence

943 bp (943 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094676

> GH04896.complete
TCAAGGCGGTAGAGCTGCAGTCCACCAGTCCCACGCCACCTAAAGGATAC
AGGCCAGCGGAAGCTCAACACAAAGAAGCGAAATGGAGGCGTCAGCAAGT
ATAAATTTGCAGCCGGTGGTGAACGTTCCTACGATTTATAAGGATCCCTG
GTACATGATCACAGTGCTGGTCCTCTATCTGTACTTCGTCACCAAAGCGG
GTCCGCATTTCATGGAATGGCGCAAACCTTACGAGCTCAAGCGACTTATC
TTGCTACATAATTTCATCCAGGTGGTTTCCTGCATATATGCTATCAAAGA
GGTCCTGTACATTACGGACAACACCATATACATCTTTTGGAAGTGCCGCG
ACATCGGGAGCAGCCCAGAGCTCGTGAGGCGGTACTACAACTTGGCCTAC
TTTCTCTTCTGGCTGAAGATCTCTGAGCTGATTGAAACCGTGATCTTTGT
GCTTCGCAAGAAACAAAACCAGGTGTCCAAGCTGCACATCTTTCATCACT
TCTCCACGGTAACGCTGGTCTACGCACTGATCAACTTCAACGAAAATGGT
TCTGCTGCTTACTTCTGCGTGTTCTTGAATTCTATCGTTCACGTTATCAT
GTACTCGTACTACTTTGTGGCGGCAGTGGCGGATAAGACCTTGGTGCAGG
CCCTAACTCCAGTGAAGAAGTGCATCACAGTGATTCAGATGACGCAGTTC
GTTCTTATCCTCACGCAGGTTGCTTTCCAGCTGGTATTGTGCGGCATGCC
GCCCTTAGTGCTTCTCTACTTCACCACCGTCATTCTTGGCATGTTCTACG
GCTTTTACGACTTCTATAATAGTGCCTATCAAGCCTCGCAGCGGCGCAAG
AGTCAGACCCCTCAGTCAGACTCAAAAAAGTAATCTCCTGTCAACAAATC
ACGCAATAAAGGGGTACCAACAAGAAAAAAAAAAAAAAAAAAA

GH04896.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-RA 1120 CG30008-RA 147..1070 1..924 4620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5778248..5778624 548..924 1840 99.2 Plus
chr2R 21145070 chr2R 5777942..5778192 300..550 1255 100 Plus
chr2R 21145070 chr2R 5777556..5777664 99..207 545 100 Plus
chr2R 21145070 chr2R 5777402..5777501 1..100 500 100 Plus
chr2R 21145070 chr2R 5777791..5777886 208..303 480 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9890744..9891120 548..924 1885 100 Plus
2R 25286936 2R 9890438..9890688 300..550 1255 100 Plus
2R 25286936 2R 9890052..9890160 99..207 545 100 Plus
2R 25286936 2R 9889898..9889997 1..100 500 100 Plus
2R 25286936 2R 9890287..9890382 208..303 480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9891943..9892319 548..924 1885 100 Plus
2R 25260384 2R 9891637..9891887 300..550 1255 100 Plus
2R 25260384 2R 9891251..9891359 99..207 545 100 Plus
2R 25260384 2R 9891097..9891196 1..100 500 100 Plus
2R 25260384 2R 9891486..9891581 208..303 480 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:21:29 has no hits.

GH04896.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:22:16 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5777402..5777499 1..98 100 -> Plus
chr2R 5777556..5777664 99..207 100 -> Plus
chr2R 5777791..5777884 208..301 100 -> Plus
chr2R 5777944..5778190 302..548 100 -> Plus
chr2R 5778249..5778624 549..924 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:16:19 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..801 83..883 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:48 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..801 83..883 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:32 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..801 83..883 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:54 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..801 83..883 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:26 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..801 83..883 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:46 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..924 1..924 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:48 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..924 1..924 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:32 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 21..944 1..924 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:54 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..924 1..924 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:26 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 21..944 1..924 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:16 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9889898..9889995 1..98 100 -> Plus
2R 9890052..9890160 99..207 100 -> Plus
2R 9890287..9890380 208..301 100 -> Plus
2R 9890440..9890686 302..548 100 -> Plus
2R 9890745..9891120 549..924 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:16 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9889898..9889995 1..98 100 -> Plus
2R 9890052..9890160 99..207 100 -> Plus
2R 9890287..9890380 208..301 100 -> Plus
2R 9890440..9890686 302..548 100 -> Plus
2R 9890745..9891120 549..924 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:16 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9889898..9889995 1..98 100 -> Plus
2R 9890052..9890160 99..207 100 -> Plus
2R 9890287..9890380 208..301 100 -> Plus
2R 9890440..9890686 302..548 100 -> Plus
2R 9890745..9891120 549..924 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:32 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5777792..5777885 208..301 100 -> Plus
arm_2R 5777403..5777500 1..98 100 -> Plus
arm_2R 5777557..5777665 99..207 100 -> Plus
arm_2R 5777945..5778191 302..548 100 -> Plus
arm_2R 5778250..5778625 549..924 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:41 Download gff for GH04896.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9891639..9891885 302..548 100 -> Plus
2R 9891944..9892319 549..924 100   Plus
2R 9891097..9891194 1..98 100 -> Plus
2R 9891251..9891359 99..207 100 -> Plus
2R 9891486..9891579 208..301 100 -> Plus

GH04896.hyp Sequence

Translation from 82 to 882

> GH04896.hyp
MEASASINLQPVVNVPTIYKDPWYMITVLVLYLYFVTKAGPHFMEWRKPY
ELKRLILLHNFIQVVSCIYAIKEVLYITDNTIYIFWKCRDIGSSPELVRR
YYNLAYFLFWLKISELIETVIFVLRKKQNQVSKLHIFHHFSTVTLVYALI
NFNENGSAAYFCVFLNSIVHVIMYSYYFVAAVADKTLVQALTPVKKCITV
IQMTQFVLILTQVAFQLVLCGMPPLVLLYFTTVILGMFYGFYDFYNSAYQ
ASQRRKSQTPQSDSKK*

GH04896.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-PA 266 CG30008-PA 1..266 1..266 1386 100 Plus
bond-PC 322 CG6921-PC 28..261 18..253 343 35.4 Plus
bond-PA 322 CG6921-PA 28..261 18..253 343 35.4 Plus
bond-PB 322 CG6921-PB 28..261 18..253 343 35.4 Plus
CG8534-PA 265 CG8534-PA 16..261 13..257 336 34.7 Plus

GH04896.pep Sequence

Translation from 82 to 882

> GH04896.pep
MEASASINLQPVVNVPTIYKDPWYMITVLVLYLYFVTKAGPHFMEWRKPY
ELKRLILLHNFIQVVSCIYAIKEVLYITDNTIYIFWKCRDIGSSPELVRR
YYNLAYFLFWLKISELIETVIFVLRKKQNQVSKLHIFHHFSTVTLVYALI
NFNENGSAAYFCVFLNSIVHVIMYSYYFVAAVADKTLVQALTPVKKCITV
IQMTQFVLILTQVAFQLVLCGMPPLVLLYFTTVILGMFYGFYDFYNSAYQ
ASQRRKSQTPQSDSKK*

GH04896.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13296-PA 256 GF13296-PA 1..255 1..258 871 61.2 Plus
Dana\GF18858-PA 325 GF18858-PA 24..262 21..254 322 34.7 Plus
Dana\GF16146-PA 297 GF16146-PA 22..253 10..245 302 33.1 Plus
Dana\GF18505-PA 350 GF18505-PA 21..273 10..264 301 32 Plus
Dana\GF15498-PA 253 GF15498-PA 12..253 18..258 293 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24117-PA 266 GG24117-PA 1..266 1..266 1211 85.3 Plus
Dere\GG11145-PA 322 GG11145-PA 45..272 35..264 306 35.1 Plus
Dere\GG12505-PA 295 GG12505-PA 21..252 10..245 303 33.1 Plus
Dere\GG11532-PA 354 GG11532-PA 21..273 10..264 302 31.8 Plus
Dere\GG17214-PA 265 GG17214-PA 16..265 13..265 286 35 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22079-PA 227 GH22079-PA 2..227 14..264 664 50.6 Plus
Dgri\GH19244-PA 298 GH19244-PA 21..256 10..249 319 33.7 Plus
Dgri\GH18330-PA 323 GH18330-PA 45..266 35..258 312 36.9 Plus
Dgri\GH18533-PA 376 GH18533-PA 31..265 21..257 291 32.8 Plus
Dgri\GH18532-PA 351 GH18532-PA 37..263 26..254 278 33 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-PA 266 CG30008-PA 1..266 1..266 1386 100 Plus
bond-PC 322 CG6921-PC 28..261 18..253 343 35.4 Plus
bond-PA 322 CG6921-PA 28..261 18..253 343 35.4 Plus
bond-PB 322 CG6921-PB 28..261 18..253 343 35.4 Plus
CG8534-PA 265 CG8534-PA 16..261 13..257 336 34.7 Plus
sit-PA 295 CG5278-PA 22..260 11..253 333 32.7 Plus
CG31522-PF 365 CG31522-PF 32..266 22..257 315 31.2 Plus
CG31522-PB 365 CG31522-PB 32..266 22..257 315 31.2 Plus
CG31522-PD 365 CG31522-PD 32..266 22..257 315 31.2 Plus
CG31522-PH 364 CG31522-PH 32..265 22..257 311 32.9 Plus
CG31522-PG 364 CG31522-PG 32..265 22..257 311 32.9 Plus
CG31522-PA 364 CG31522-PA 32..265 22..257 311 32.9 Plus
CG31523-PF 354 CG31523-PF 22..272 11..263 306 31.2 Plus
CG31523-PE 354 CG31523-PE 22..272 11..263 306 31.2 Plus
CG31523-PG 354 CG31523-PG 22..272 11..263 306 31.2 Plus
CG31523-PD 354 CG31523-PD 22..272 11..263 306 31.2 Plus
CG31523-PA 354 CG31523-PA 22..272 11..263 306 31.2 Plus
CG31523-PB 354 CG31523-PB 22..272 11..263 306 31.2 Plus
CG31523-PC 354 CG31523-PC 22..272 11..263 306 31.2 Plus
CG5326-PA 277 CG5326-PA 36..263 22..250 294 34.6 Plus
CG31522-PI 392 CG31522-PI 32..293 22..257 292 29.2 Plus
CG2781-PA 329 CG2781-PA 28..258 18..249 289 34 Plus
eloF-PA 257 CG16905-PA 8..257 13..257 286 31.9 Plus
CG9458-PA 264 CG9458-PA 28..262 25..258 285 31.7 Plus
CG9459-PA 265 CG9459-PA 26..261 23..257 285 30.3 Plus
CG6660-PA 272 CG6660-PA 31..266 23..258 283 31 Plus
CG33110-PA 337 CG33110-PA 62..313 18..266 276 30.7 Plus
CG17821-PA 262 CG17821-PA 17..261 13..256 274 31.6 Plus
CG18609-PA 263 CG18609-PA 21..263 22..262 274 35.3 Plus
CG31141-PA 253 CG31141-PA 21..253 22..257 251 28 Plus
CG16904-PA 262 CG16904-PA 25..258 26..258 231 26.7 Plus
Elo68beta-PB 269 CG11801-PB 31..255 18..242 230 31.8 Plus
Elo68alpha-PA 262 CG32072-PA 29..255 23..252 215 29.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19161-PA 259 GI19161-PA 4..241 22..258 766 60.9 Plus
Dmoj\GI24279-PA 307 GI24279-PA 21..253 10..246 308 33.8 Plus
Dmoj\GI23310-PA 326 GI23310-PA 45..261 35..253 300 36.4 Plus
Dmoj\GI22070-PA 383 GI22070-PA 31..258 21..250 292 32.6 Plus
Dmoj\GI22068-PA 354 GI22068-PA 41..268 30..259 279 32.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16761-PA 262 GL16761-PA 29..259 4..259 745 57 Plus
Dper\GL13809-PA 323 GL13809-PA 24..276 21..262 332 35.5 Plus
Dper\GL13680-PA 300 GL13680-PA 21..256 10..249 306 32.9 Plus
Dper\GL22347-PA 387 GL22347-PA 21..273 10..264 297 32 Plus
Dper\GL13683-PA 277 GL13683-PA 36..271 22..258 283 34 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15573-PA 287 GA15573-PA 29..284 4..259 909 65.2 Plus
Dpse\GA19958-PA 321 GA19958-PA 24..276 21..262 334 35.9 Plus
Dpse\GA18780-PA 300 GA18780-PA 21..256 10..249 306 32.9 Plus
Dpse\GA16298-PA 359 GA16298-PA 21..273 10..264 298 32 Plus
Dpse\GA18806-PA 277 GA18806-PA 36..271 22..258 283 34 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21165-PA 266 GM21165-PA 1..266 1..266 1331 94.4 Plus
Dsec\GM26443-PA 322 GM26443-PA 45..272 35..264 306 35.1 Plus
Dsec\GM23637-PA 295 GM23637-PA 21..252 10..245 304 33.1 Plus
Dsec\GM23845-PA 265 GM23845-PA 16..265 13..263 303 35.3 Plus
Dsec\GM10700-PA 354 GM10700-PA 21..273 10..264 301 31.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10696-PA 266 GD10696-PA 1..266 1..266 1327 93.6 Plus
Dsim\GD20962-PA 322 GD20962-PA 45..272 35..264 306 35.1 Plus
Dsim\GD18652-PA 265 GD18652-PA 16..261 13..257 305 35.1 Plus
Dsim\GD18447-PA 295 GD18447-PA 21..252 10..245 304 33.1 Plus
Dsim\GD19675-PA 354 GD19675-PA 21..273 10..264 292 31.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22296-PA 269 GJ22296-PA 12..255 16..258 775 58.2 Plus
Dvir\GJ23058-PA 299 GJ23058-PA 21..256 10..249 327 34.6 Plus
Dvir\GJ24166-PA 327 GJ24166-PA 45..261 35..253 302 36.4 Plus
Dvir\GJ24117-PA 354 GJ24117-PA 37..275 26..266 296 31.8 Plus
Dvir\GJ24664-PA 285 GJ24664-PA 36..263 22..250 268 36.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21434-PA 498 GK21434-PA 393..497 157..261 347 62.9 Plus
Dwil\GK12817-PA 322 GK12817-PA 24..267 21..264 332 35.7 Plus
Dwil\GK14432-PA 295 GK14432-PA 21..256 10..249 321 34.2 Plus
Dwil\GK13751-PA 376 GK13751-PA 31..265 21..257 298 31.2 Plus
Dwil\GK13749-PA 359 GK13749-PA 21..265 10..256 288 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19314-PA 266 GE19314-PA 1..266 1..266 1274 89.5 Plus
Dyak\GE10310-PA 322 GE10310-PA 24..272 21..264 308 34.1 Plus
Dyak\GE24026-PA 297 GE24026-PA 21..252 10..245 303 33.1 Plus
Dyak\GE25346-PA 354 GE25346-PA 21..273 10..264 301 31.8 Plus
Dyak\GE25348-PA 364 GE25348-PA 31..265 21..257 295 32.4 Plus