Clone GH04919 Report

Search the DGRC for GH04919

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:49
Well:19
Vector:pOT2
Associated Gene/TranscriptCG2091-RA
Protein status:GH04919.pep: gold
Preliminary Size:1300
Sequenced Size:1347

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2091 2001-01-01 Release 2 assignment
CG2091 2002-07-14 Blastp of sequenced clone
CG2091 2003-01-01 Sim4 clustering to Release 3
CG2091 2008-04-29 Release 5.5 accounting
CG2091 2008-08-15 Release 5.9 accounting
CG2091 2008-12-18 5.12 accounting

Clone Sequence Records

GH04919.complete Sequence

1347 bp (1347 high quality bases) assembled on 2002-07-14

GenBank Submission: BT001389

> GH04919.complete
TCATGGTCACGCTGCCTCTCTGAAAAGCCGCAAGAAAATAAAAATAAATA
TATCTTTCTAGCTATTATTATTGTTGTTATTATTAACAAAAATGTCGGAA
ACAGTTGATAGCACAGAGGTAAAGTCGCCGTCGTACGACTTATCCAAGTT
CCAACTGAAGCGAATCCTAACCAACAACAGCGTTAGGAAAAGTATATCCC
TGCTTGGCACTTTTCCGGATTTAGGAACCGATGATGCCATTGTTGTTTTC
GAGAAAAATGCGTACCGGGAAAGCGATGTGGCCACGGCGTCATCAGAAGA
GTCTCCCAAGAAGCCTAGCTATTTTACCGCGGACCTGAAAGTTGACACTG
AGTTTATCAACAATATCTACGGCAGTTTTCAGGTTGTGCCGACCCAGGAT
TTGTGCAGTGTGAAAAGCACAGTCATTTATCCCGCCACCGAGAAGCACAT
CGAGAAATACTCAGTATCTCAAAAGTATCTCATCCGGGAGACTCCTGATC
TCTACCAAAGAATAACTCTTCCATATCTCACCTCAAGTCAATTCTCCCTC
GAGTGGGTCTACAACATACTCGAGCATAAGCAGGAGACGGAACGTATCGT
GTACGAGGACAGGGATCCAAAGACTGGCTTTATCCTTCTGCCCGATCTCA
AATGGGACGGACGCAATGTGGAAACCCTCTATCTGCTGGGAATTGTCCAC
AAGCGCGACATCAAGTCTCTGCGCGACTTGAATGAAAGTCATCTCGATCT
TTTGCGCAACGTGCGCCAAGCGTCGAAGGACGCAATTGCCAAGCTATACG
GCATTAATCCCAATCAGCTGCGCATGTACTTTCATTACCAGCCGTCCTTC
TATCACCTCCACGTGCACATCAATCCAGTACGGAACGATGCACCGGGCAT
ATGGTGCGAGAAGTCCCACATGCTGGACACGGTGATCAACAACTTGGAGC
TGATGCCGGACTACTATCAGCGAGCCACCTTGCCGTTTGTCCTGTACGAA
GGCAATAAGCTGTTGGATCTCTATGAGCAGGAGCTACCCATTAGAGCGCT
GACAGTATCGAGCGACGATAAGGAGCTCCCTGACTCAGACTCTTTGAACG
TCGCTCCACCGGAAGGCTTTAGCGATGAGGAGCCGGAGGAGAGGCAGTGC
AAGCGCATAAAGTTGGGCTCGCCGGAGCCCAAGGAGGCCGAGTCCGCTGT
TCAGGCGTGTGCCTAAACTGGTATTACTTAATGAGAAAGCTAACCCTAGA
TGTTGCCTATCAAAAATACATCCTACTTATGATCATTCAATTCAAAATAA
AGTTATTTTCAAAAATTTCGTTTGAGAGCAAAAAAAAAAAAAAAAAA

GH04919.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2091-RA 1371 CG2091-RA 32..1361 1..1330 6650 100 Plus
CG2091.a 1357 CG2091.a 32..1357 1..1329 6575 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1578965..1579886 1329..408 4610 100 Minus
chr3R 27901430 chr3R 1580156..1580415 260..1 1300 100 Minus
chr3R 27901430 chr3R 1579946..1580095 409..260 750 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5753317..5754239 1330..408 4615 100 Minus
3R 32079331 3R 5754509..5754768 260..1 1300 100 Minus
3R 32079331 3R 5754299..5754448 409..260 750 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5494148..5495070 1330..408 4615 100 Minus
3R 31820162 3R 5495340..5495599 260..1 1300 100 Minus
3R 31820162 3R 5495130..5495279 409..260 750 100 Minus
Blast to na_te.dros performed 2019-03-16 17:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1192..1262 42..111 118 64.8 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 2871..2902 87..56 115 84.4 Minus
Stalker 7256 Stalker STALKER 7256bp 2765..2796 87..56 115 84.4 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 27..66 85..44 114 81 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7065..7104 85..44 114 81 Minus

GH04919.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:06:59 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1578965..1579886 408..1329 100 <- Minus
chr3R 1579948..1580094 261..407 100 <- Minus
chr3R 1580156..1580415 1..260 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:16:25 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 1..1125 92..1216 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:16:41 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 1..1125 92..1216 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:51:48 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 1..1125 92..1216 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:07:54 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 1..1125 92..1216 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:00 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 1..1125 92..1216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:40:44 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 6..1334 1..1329 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:16:41 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 6..1334 1..1329 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:51:48 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 7..1335 1..1329 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:07:54 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 6..1334 1..1329 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:00 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
CG2091-RA 7..1335 1..1329 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:59 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5753318..5754239 408..1329 100 <- Minus
3R 5754301..5754447 261..407 100 <- Minus
3R 5754509..5754768 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:59 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5753318..5754239 408..1329 100 <- Minus
3R 5754301..5754447 261..407 100 <- Minus
3R 5754509..5754768 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:59 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5753318..5754239 408..1329 100 <- Minus
3R 5754301..5754447 261..407 100 <- Minus
3R 5754509..5754768 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:51:48 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1579040..1579961 408..1329 100 <- Minus
arm_3R 1580023..1580169 261..407 100 <- Minus
arm_3R 1580231..1580490 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:39:44 Download gff for GH04919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5494149..5495070 408..1329 100 <- Minus
3R 5495132..5495278 261..407 100 <- Minus
3R 5495340..5495599 1..260 100   Minus

GH04919.pep Sequence

Translation from 91 to 1215

> GH04919.pep
MSETVDSTEVKSPSYDLSKFQLKRILTNNSVRKSISLLGTFPDLGTDDAI
VVFEKNAYRESDVATASSEESPKKPSYFTADLKVDTEFINNIYGSFQVVP
TQDLCSVKSTVIYPATEKHIEKYSVSQKYLIRETPDLYQRITLPYLTSSQ
FSLEWVYNILEHKQETERIVYEDRDPKTGFILLPDLKWDGRNVETLYLLG
IVHKRDIKSLRDLNESHLDLLRNVRQASKDAIAKLYGINPNQLRMYFHYQ
PSFYHLHVHINPVRNDAPGIWCEKSHMLDTVINNLELMPDYYQRATLPFV
LYEGNKLLDLYEQELPIRALTVSSDDKELPDSDSLNVAPPEGFSDEEPEE
RQCKRIKLGSPEPKEAESAVQACA*

GH04919.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18649-PA 375 GF18649-PA 1..375 1..374 1578 79.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10867-PA 374 GG10867-PA 1..374 1..374 1875 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19441-PA 380 GH19441-PA 14..380 7..374 1442 74.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2091-PA 374 CG2091-PA 1..374 1..374 1948 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24670-PA 381 GI24670-PA 14..381 7..374 1433 72.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23014-PA 373 GL23014-PA 1..373 1..374 1540 76.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15233-PA 373 GA15233-PA 1..373 1..374 1550 77.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10593-PA 374 GM10593-PA 1..374 1..374 1928 96.5 Plus
Dsec\GM23573-PA 246 GM23573-PA 1..245 1..245 1245 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19585-PA 374 GD19585-PA 1..374 1..374 1934 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23890-PA 386 GJ23890-PA 14..386 7..374 1442 73.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13922-PA 377 GK13922-PA 1..377 1..374 1425 72.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24141-PA 374 GE24141-PA 1..374 1..374 1841 92 Plus

GH04919.hyp Sequence

Translation from 91 to 1215

> GH04919.hyp
MSETVDSTEVKSPSYDLSKFQLKRILTNNSVRKSISLLGTFPDLGTDDAI
VVFEKNAYRESDVATASSEESPKKPSYFTADLKVDTEFINNIYGSFQVVP
TQDLCSVKSTVIYPATEKHIEKYSVSQKYLIRETPDLYQRITLPYLTSSQ
FSLEWVYNILEHKQETERIVYEDRDPKTGFILLPDLKWDGRNVETLYLLG
IVHKRDIKSLRDLNESHLDLLRNVRQASKDAIAKLYGINPNQLRMYFHYQ
PSFYHLHVHINPVRNDAPGIWCEKSHMLDTVINNLELMPDYYQRATLPFV
LYEGNKLLDLYEQELPIRALTVSSDDKELPDSDSLNVAPPEGFSDEEPEE
RQCKRIKLGSPEPKEAESAVQACA*

GH04919.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2091-PA 374 CG2091-PA 1..374 1..374 1948 100 Plus