Clone GH04973 Report

Search the DGRC for GH04973

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:49
Well:73
Vector:pOT2
Associated Gene/TranscriptCG10194-RA
Protein status:GH04973.pep: gold
Preliminary Size:1300
Sequenced Size:1216

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10194 2001-01-01 Release 2 assignment
CG10194 2002-05-17 Blastp of sequenced clone
CG10194 2003-01-01 Sim4 clustering to Release 3
CG10194 2008-04-29 Release 5.5 accounting
CG10194 2008-08-15 Release 5.9 accounting
CG10194 2008-12-18 5.12 accounting

Clone Sequence Records

GH04973.complete Sequence

1216 bp (1216 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118739

> GH04973.complete
TGTTACCTAAATATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCTCAAG
TTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGTGATT
ACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCCGGAG
TCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGCCTGC
CTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTGCGGA
ACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAAGGCA
GATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCATACG
AGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAATCAT
TGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCGCGCC
CACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGCTCTG
CAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGGTCTG
TCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTTCTTT
ATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATGAGGT
CAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGCCTAA
GAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCGCTGC
CTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGCGTGA
GGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACAAATG
GATTAGTGCATCTCTTGCCAGGAGATGATGCTTACCCCGCCGATCCGGAT
GCAAGTAACGAAAAAATTGAGATCGATTTGTCAGTCGAGGAATTCCGTTC
GAAGACGAATGCTAAATTACATCGATCGGAGCACTGGAACCAGCATCAGT
CGCAGCTGATAATTAAGTTTGAGCGGGATGATGGTCAGGTTCATCCATTG
GATCCAACAAAATTATAGAGGTAGAGCCGGTTTCCTCTATGTCAGGTGCA
TTTATCTAGTTTTATAAGTTTTCCAACAATTGATATATAAAGTTGGACAT
AACACTTTTTAGCAATATACAACTTATAAAGTTCGATTTCCTCCAAAAAA
AAAAAAAAAAAAAAAA

GH04973.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1388 CG10194-RA 121..1315 1..1195 5975 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19487223..19487752 1192..663 2635 99.8 Minus
chr2L 23010047 chr2L 19487839..19488181 663..321 1685 99.4 Minus
chr2L 23010047 chr2L 19488244..19488458 320..106 1075 100 Minus
chr2L 23010047 chr2L 19488517..19488622 106..1 530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19488681..19489213 1195..663 2665 100 Minus
2L 23513712 2L 19489300..19489642 663..321 1715 100 Minus
2L 23513712 2L 19489705..19489919 320..106 1075 100 Minus
2L 23513712 2L 19489978..19490083 106..1 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19488681..19489213 1195..663 2665 100 Minus
2L 23513712 2L 19489300..19489642 663..321 1715 100 Minus
2L 23513712 2L 19489705..19489919 320..106 1075 100 Minus
2L 23513712 2L 19489978..19490083 106..1 530 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:57:36 has no hits.

GH04973.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:58:32 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19487221..19487751 664..1194 99 <- Minus
chr2L 19487839..19488181 321..663 99 <- Minus
chr2L 19488244..19488458 106..320 100 <- Minus
chr2L 19488518..19488622 1..105 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:16:51 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1056 13..1068 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:34 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1056 13..1068 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:46:04 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1056 13..1068 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:11 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1056 13..1068 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:43 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1056 13..1068 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:36 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1194 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:34 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1194 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:46:04 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 22..1215 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:11 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1194 1..1194 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:43 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 22..1215 1..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:32 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19488682..19489212 664..1194 100 <- Minus
2L 19489300..19489642 321..663 100 <- Minus
2L 19489705..19489919 106..320 100 <- Minus
2L 19489979..19490083 1..105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:32 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19488682..19489212 664..1194 100 <- Minus
2L 19489300..19489642 321..663 100 <- Minus
2L 19489705..19489919 106..320 100 <- Minus
2L 19489979..19490083 1..105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:32 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19488682..19489212 664..1194 100 <- Minus
2L 19489300..19489642 321..663 100 <- Minus
2L 19489705..19489919 106..320 100 <- Minus
2L 19489979..19490083 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:46:04 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19488682..19489212 664..1194 100 <- Minus
arm_2L 19489300..19489642 321..663 100 <- Minus
arm_2L 19489705..19489919 106..320 100 <- Minus
arm_2L 19489979..19490083 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:28 Download gff for GH04973.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19488682..19489212 664..1194 100 <- Minus
2L 19489300..19489642 321..663 100 <- Minus
2L 19489705..19489919 106..320 100 <- Minus
2L 19489979..19490083 1..105 100   Minus

GH04973.hyp Sequence

Translation from 1 to 1067

> GH04973.hyp
CYLNMSRLLPKIRSSSSLILLAKNQVEKSTSCDYNALLLTRTQKSTFMPE
SSVFPGGVCDASDSSPAWLEHFQRNEFSAAKLRNVGHVKGPRPDIFHTKA
DKKSLDPSLALRLTAIRETFEELGILLCRDSKSLTSTSDYGAFYDQFDRA
HWQHIVHNNASQFLELCKQLDVLPDVWSLHEWSVWRTPSTFKKRFETAFF
MTALEQEPRVHIEPNEVKDSAWRSPLDYLQASLRKELWLPPPQFYELSRC
LNFSSLDNLRQFAAEREVKGIQLIHPVVHKCTNGLVHLLPGDDAYPADPD
ASNEKIEIDLSVEEFRSKTNAKLHRSEHWNQHQSQLIIKFERDDGQVHPL
DPTKL*

GH04973.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-PA 351 CG10194-PA 1..351 5..355 1861 100 Plus
CG18094-PB 360 CG18094-PB 9..351 13..352 537 34.9 Plus
CG18094-PA 360 CG18094-PA 9..351 13..352 537 34.9 Plus
CG10195-PB 361 CG10195-PB 9..328 11..325 535 36.3 Plus
CG10195-PC 361 CG10195-PC 9..328 11..325 535 36.3 Plus

GH04973.pep Sequence

Translation from 12 to 1067

> GH04973.pep
MSRLLPKIRSSSSLILLAKNQVEKSTSCDYNALLLTRTQKSTFMPESSVF
PGGVCDASDSSPAWLEHFQRNEFSAAKLRNVGHVKGPRPDIFHTKADKKS
LDPSLALRLTAIRETFEELGILLCRDSKSLTSTSDYGAFYDQFDRAHWQH
IVHNNASQFLELCKQLDVLPDVWSLHEWSVWRTPSTFKKRFETAFFMTAL
EQEPRVHIEPNEVKDSAWRSPLDYLQASLRKELWLPPPQFYELSRCLNFS
SLDNLRQFAAEREVKGIQLIHPVVHKCTNGLVHLLPGDDAYPADPDASNE
KIEIDLSVEEFRSKTNAKLHRSEHWNQHQSQLIIKFERDDGQVHPLDPTK
L*

GH04973.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15630-PA 352 GF15630-PA 4..352 3..351 1470 76.8 Plus
Dana\GF15631-PA 342 GF15631-PA 13..309 33..321 568 36.9 Plus
Dana\GF14240-PA 353 GF14240-PA 3..341 9..344 554 35.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21628-PA 351 GG21628-PA 1..351 1..351 1731 91.2 Plus
Dere\GG21188-PA 361 GG21188-PA 10..358 9..351 526 35.5 Plus
Dere\GG21629-PA 341 GG21629-PA 10..332 31..346 518 34.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10625-PA 349 GH10625-PA 4..346 3..348 1123 59.5 Plus
Dgri\GH10627-PA 338 GH10627-PA 1..328 34..345 603 38.3 Plus
Dgri\GH11106-PA 360 GH11106-PA 12..357 9..351 548 37.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-PA 351 CG10194-PA 1..351 1..351 1861 100 Plus
CG18094-PB 360 CG18094-PB 9..351 9..348 537 34.9 Plus
CG18094-PA 360 CG18094-PA 9..351 9..348 537 34.9 Plus
CG10195-PB 361 CG10195-PB 9..328 7..321 535 36.3 Plus
CG10195-PC 361 CG10195-PC 9..328 7..321 535 36.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19791-PA 233 GI19791-PA 1..230 119..348 861 66.1 Plus
Dmoj\GI18228-PA 358 GI18228-PA 8..316 7..313 550 38.5 Plus
Dmoj\GI19813-PA 333 GI19813-PA 1..323 34..345 526 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21100-PA 352 GL21100-PA 4..352 3..351 1392 71.9 Plus
Dper\GL21101-PA 359 GL21101-PA 1..326 1..321 579 37.5 Plus
Dper\GL21217-PA 362 GL21217-PA 11..321 9..314 549 37.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10146-PA 352 GA10146-PA 4..352 3..351 1392 71.9 Plus
Dpse\GA29071-PA 359 GA29071-PA 1..326 1..321 578 37.5 Plus
Dpse\GA28769-PA 362 GA28769-PA 11..321 9..314 554 37.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17006-PA 351 GM17006-PA 1..351 1..351 1773 94 Plus
Dsec\GM17354-PA 360 GM17354-PA 9..351 9..348 541 36 Plus
Dsec\GM17007-PA 341 GM17007-PA 5..311 26..324 529 36.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21755-PA 351 GD21755-PA 1..351 1..351 1798 95.4 Plus
Dsim\GD21756-PA 341 GD21756-PA 5..311 26..324 537 36.9 Plus
Dsim\GD24212-PA 223 GD24212-PA 9..204 9..202 352 40.8 Plus
Dsim\GD24213-PA 118 GD24213-PA 3..109 240..348 160 31.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18096-PA 346 GJ18096-PA 6..346 5..351 1186 63.7 Plus
Dvir\GJ18098-PA 376 GJ18098-PA 18..366 9..345 632 38.5 Plus
Dvir\GJ18136-PA 360 GJ18136-PA 13..344 9..347 542 37.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18202-PA 347 GK18202-PA 3..347 2..351 1193 63.5 Plus
Dwil\GK24223-PA 340 GK24223-PA 9..328 7..321 617 40.7 Plus
Dwil\GK18187-PA 358 GK18187-PA 13..318 9..315 549 37.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12648-PA 351 GE12648-PA 1..351 1..351 1717 89.7 Plus
Dyak\GE12649-PA 365 GE12649-PA 9..332 7..321 550 36.4 Plus
Dyak\GE13260-PA 361 GE13260-PA 10..320 9..314 548 38 Plus