![]() | BDGP Sequence Production Resources |
Search the DGRC for GH05001
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 50 |
Well: | 1 |
Vector: | pOT2 |
Associated Gene/Transcript | Rip11-RB |
Protein status: | GH05001.pep: gold |
Sequenced Size: | 2261 |
Gene | Date | Evidence |
---|---|---|
CG6606 | 2003-01-01 | Sim4 clustering to Release 3 |
l(1)G0003 | 2008-04-29 | Release 5.5 accounting |
l(1)G0003 | 2008-08-15 | Release 5.9 accounting |
Rip11 | 2008-12-18 | 5.12 accounting |
2261 bp (2261 high quality bases) assembled on 2005-07-22
GenBank Submission: BT023794
> GH05001.complete GCCACCTTTCAAACAACAACATCACGCGTCGCGTCTCCGTCTTTTTCCTT TTTTTTTTTACATTAGACTACACTACGTTCTCCTGGCGTTTCGTTCGTGT CGCGCGTGATTAAATTGGCAACTGAGAACAATAAGAAGAAATCACAGTGT GCGAGCAGCAACAAACACAACGATTAGTGTAAACAAAACACATCGACAAC AACAATCCAAATTACAATATAGGCAAAGAAGAAGAAACGAAAGGCAGGAC CTTCGCAGCAAGAGCGAGACAGCAAAGGATCGGGATCGGGAGAGAGCGTG AGAGTGCGACTTGATCAACGGGATACAGGGTGACATGTGGAGTCCGACGC ACTGTAGTGTAACGGTGCAGCGAGCGCGTGGGCTGCTCACCAAGGGCAAG AATGGCACCAACAACTGCTTCGTCACCATTGCTCTGGGCAAGGAGAAGTA CCAGACGTCCGTCAAGGACAAGGCCGAGACGAGCGTCAACTGGAACGAGG AGTGCGAACTGAAAATTCCCGATCAGGGTAATCGCGCCGAGCTCACTTTG ACCTGCCTGCACAGGAACAATCTGGGCATCGATGAGTTCCTCGGCCAGGC GACGCTGCCGCTCAACGAGATGGATGTGTATGACCGGCCACGCGCCAAGT GGTTCAAGCTGGAGAGCAAGCCCGGCAAGGAGAAGAAGAACAAGGAGCGG GGCGAGCTGGAGGTGCGCATCGCCTTCGTGGTCAAGTCCGGCTCGCTGAC CGATCTCAGCAAGAAGGACAAGCACAAGTCTTCCATTGGCCAGCTGGCCA GCTCCGTGGGTGGCAGTCTGTTGTCCATCGGCAACGGCGAGAAGCGGCGA GGCATCAAGAAGCTGGCTGGCTCGCTTAGCTCTAAGCTGCACATCCGTAG CAAGAAGAAGAACCAGGAGGCGGGCGCCGACGATAGTAGCTCCTTCGGCG GCTCCTTCGCCAGCCTGGGCACGCCCAACAGCTCCAACGGCAGGGGCCAG AATGGTGGCAGTGGCAGGCGACGTGGCGGCCAGCGGGCGGGCGAAGCCGA TCCCGGCGTGATCAGCGAGGACGAGGACGAGTTTGTGTTCGACAACCTCT CGCACAAGAGCTCCGGCAGCTCACTTAACATCCAACGCATCGGCCTGCAG CCGCCGCCAGTCGGTACGCCCAACTTTACGCCGCGCCACCCATCGCCCCT GCTGAACAACGGAGTTAGTGGCGTCGGAAGCGGCAGCGCGAAAGATAAAT ACAACAACGACAACGACAGCAACTCGCCCAGTCCCAAGTCTACGGAGCGC ATCATAATTGGTCACGAGAAGTCGGGATCGCATGCGGATCGCCGCTCGGA GATATCCGCCCAGCTGGCCAAGAAATACGAGGGCAAGTCGCGCGAGGAAC TAATGCTAATTGCCAACGGAATGGAGAACGAGGCTCTGCTGCAGCGGCAG CGCGTGAAGGAGCTGGAAGACTATCTGGACAACCTGCTGCTGCGCGTGAT GGAGACGCACCCGAAGATCCTGCAGAATCCGTATTCGCGCACCACGTCCG CCAAGAGCGGCTAAACAAACAGCCAAACTGGCCGTCGCCAGCAACCGGTT CACTTGTCGCAGAGCAGCTGGAGAAGATCTGCGGAGGTTGCTCCGGAAGC TGTTGGGTCGAAACGAATCGAAACACCACGTTGCCTTTGCCGCGAACAGC AAAATTCAAGTGCTTTCTAAAACGTATTGCTAAGAGGGAAACTAAGTGCA CGCGTAAAACAGTTAGGCTTAAGGAGTGCAAAATCTATATTGATATTTTA TTGTGTGTAGCATTCGTACTTTTTCGGTTAGAAATTCCCCTCCCCCCCAC ACACACACACACTAAACAGAACTAAATTTGTTGTACTATATGTTTATCCT GGCAATTGAAGCGATTTGTCGTGTTGCGAGTCCTTGTCAATTGATTGAAA TTATCCGAAAGTATTGTGTTTGTTTTTTTGTATGACCCATTTTTTTTTTT AGTATTGTGCGACAAGAGTTTGAGAAGTTTCTGTAAAGTGCTGCCTGGGA AGTGGCCTTAGTGAATTAAGTCTTAAATTATTTATGTTTTAGCGGTTAAG CGAAAAGTGGGAAAGGGGGACCATCCACGTATGTCCCCCGTGAAAAAAAG AACACCACACACAGTTGAAATATGTTGATACTACAATGATTTTACTTATT GATATAAACGCAAGCAAAATAAAAACATTTTTAACATAAATAAAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rip11-RB | 2356 | Rip11-RB | 117..2356 | 1..2240 | 11200 | 100 | Plus |
Rip11.a | 3815 | Rip11.a | 95..1342 | 1..1248 | 6225 | 99.9 | Plus |
Rip11-RA | 3839 | Rip11-RA | 40..1287 | 1..1248 | 6225 | 99.9 | Plus |
Rip11.a | 3815 | Rip11.a | 3130..3815 | 1558..2243 | 3430 | 100 | Plus |
Rip11-RA | 3839 | Rip11-RA | 3157..3839 | 1558..2240 | 3415 | 100 | Plus |
Rip11.a | 3815 | Rip11.a | 2555..2869 | 1243..1557 | 1575 | 100 | Plus |
Rip11-RA | 3839 | Rip11-RA | 2500..2814 | 1243..1557 | 1575 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18528639..18529376 | 1248..511 | 3645 | 99.6 | Minus |
chrX | 22417052 | chrX | 18524799..18525484 | 2241..1556 | 3415 | 99.9 | Minus |
chrX | 22417052 | chrX | 18536357..18536721 | 365..1 | 1825 | 100 | Minus |
chrX | 22417052 | chrX | 18526577..18526739 | 1557..1395 | 815 | 100 | Minus |
chrX | 22417052 | chrX | 18526798..18526952 | 1397..1243 | 745 | 98.7 | Minus |
chrX | 22417052 | chrX | 18529437..18529590 | 518..365 | 740 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18639460..18640197 | 1248..511 | 3675 | 99.9 | Minus |
X | 23542271 | X | 18635634..18636321 | 2243..1556 | 3440 | 100 | Minus |
X | 23542271 | X | 18647190..18647554 | 365..1 | 1825 | 100 | Minus |
X | 23542271 | X | 18637413..18637575 | 1557..1395 | 815 | 100 | Minus |
X | 23542271 | X | 18637634..18637788 | 1397..1243 | 775 | 100 | Minus |
X | 23542271 | X | 18640258..18640411 | 518..365 | 740 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18647558..18648295 | 1248..511 | 3675 | 99.8 | Minus |
X | 23527363 | X | 18643732..18644419 | 2243..1556 | 3440 | 100 | Minus |
X | 23527363 | X | 18655288..18655652 | 365..1 | 1825 | 100 | Minus |
X | 23527363 | X | 18645511..18645673 | 1557..1395 | 815 | 100 | Minus |
X | 23527363 | X | 18645732..18645886 | 1397..1243 | 775 | 100 | Minus |
X | 23527363 | X | 18648356..18648509 | 518..365 | 740 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 103..177 | 2166..2239 | 120 | 65.8 | Plus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1560..1634 | 2239..2166 | 120 | 65.8 | Minus |
rover | 7318 | rover ROVER 7318bp | 1260..1298 | 1241..1279 | 114 | 76.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18524799..18525482 | 1558..2241 | 99 | <- | Minus |
chrX | 18526577..18526737 | 1397..1557 | 100 | <- | Minus |
chrX | 18526799..18526950 | 1245..1396 | 98 | <- | Minus |
chrX | 18528643..18529376 | 511..1244 | 99 | <- | Minus |
chrX | 18529445..18529589 | 366..510 | 100 | <- | Minus |
chrX | 18536357..18536721 | 1..365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rip11-RA | 1..910 | 335..1244 | 100 | -> | Plus |
Rip11-RA | 2129..2444 | 1245..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rip11-RB | 1..1230 | 335..1564 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rip11-RB | 1..1230 | 335..1564 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0003-RA | 1..910 | 335..1244 | 100 | -> | Plus |
l(1)G0003-RA | 2129..2444 | 1245..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rip11-RB | 1..1230 | 335..1564 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rip11-RA | 10..1253 | 1..1244 | 100 | -> | Plus |
Rip11-RA | 2472..2784 | 1245..1557 | 100 | -> | Plus |
Rip11-RA | 3127..3810 | 1558..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rip11-RB | 10..2244 | 1..2235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rip11-RB | 14..2248 | 1..2235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0003-RA | 2472..2784 | 1245..1557 | 100 | -> | Plus |
l(1)G0003-RA | 10..1253 | 1..1244 | 100 | -> | Plus |
l(1)G0003-RA | 3127..3810 | 1558..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rip11-RB | 95..2329 | 1..2235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18635636..18636319 | 1558..2241 | 100 | <- | Minus |
X | 18637413..18637573 | 1397..1557 | 100 | <- | Minus |
X | 18637635..18637786 | 1245..1396 | 100 | <- | Minus |
X | 18639464..18640197 | 511..1244 | 100 | <- | Minus |
X | 18640266..18640410 | 366..510 | 100 | <- | Minus |
X | 18647190..18647554 | 1..365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18635636..18636319 | 1558..2241 | 100 | <- | Minus |
X | 18637413..18637573 | 1397..1557 | 100 | <- | Minus |
X | 18637635..18637786 | 1245..1396 | 100 | <- | Minus |
X | 18639464..18640197 | 511..1244 | 100 | <- | Minus |
X | 18640266..18640410 | 366..510 | 100 | <- | Minus |
X | 18647190..18647554 | 1..365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18635636..18636319 | 1558..2241 | 100 | <- | Minus |
X | 18637413..18637573 | 1397..1557 | 100 | <- | Minus |
X | 18637635..18637786 | 1245..1396 | 100 | <- | Minus |
X | 18639464..18640197 | 511..1244 | 100 | <- | Minus |
X | 18640266..18640410 | 366..510 | 100 | <- | Minus |
X | 18647190..18647554 | 1..365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18531668..18531819 | 1245..1396 | 100 | <- | Minus |
arm_X | 18529669..18530352 | 1558..2241 | 100 | <- | Minus |
arm_X | 18531446..18531606 | 1397..1557 | 100 | <- | Minus |
arm_X | 18533497..18534230 | 511..1244 | 100 | <- | Minus |
arm_X | 18534299..18534443 | 366..510 | 100 | <- | Minus |
arm_X | 18541223..18541587 | 1..365 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18645511..18645671 | 1397..1557 | 100 | <- | Minus |
X | 18645733..18645884 | 1245..1396 | 100 | <- | Minus |
X | 18643734..18644417 | 1558..2241 | 100 | <- | Minus |
X | 18647562..18648295 | 511..1244 | 100 | <- | Minus |
X | 18648364..18648508 | 366..510 | 100 | <- | Minus |
X | 18655288..18655652 | 1..365 | 100 | Minus |
Translation from 334 to 1563
> GH05001.pep MWSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVKDKAETS VNWNEECELKIPDQGNRAELTLTCLHRNNLGIDEFLGQATLPLNEMDVYD RPRAKWFKLESKPGKEKKNKERGELEVRIAFVVKSGSLTDLSKKDKHKSS IGQLASSVGGSLLSIGNGEKRRGIKKLAGSLSSKLHIRSKKKNQEAGADD SSSFGGSFASLGTPNSSNGRGQNGGSGRRRGGQRAGEADPGVISEDEDEF VFDNLSHKSSGSSLNIQRIGLQPPPVGTPNFTPRHPSPLLNNGVSGVGSG SAKDKYNNDNDSNSPSPKSTERIIIGHEKSGSHADRRSEISAQLAKKYEG KSREELMLIANGMENEALLQRQRVKELEDYLDNLLLRVMETHPKILQNPY SRTTSAKSG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22404-PA | 882 | GF22404-PA | 1..303 | 1..305 | 1309 | 92.5 | Plus |
Dana\GF22404-PA | 882 | GF22404-PA | 756..863 | 300..407 | 537 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18106-PA | 828 | GG18106-PA | 1..306 | 1..305 | 1593 | 97.7 | Plus |
Dere\GG18106-PA | 828 | GG18106-PA | 705..809 | 303..407 | 542 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12810-PA | 874 | GH12810-PA | 1..293 | 1..290 | 1185 | 87.1 | Plus |
Dgri\GH12810-PA | 874 | GH12810-PA | 767..873 | 300..407 | 510 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rip11-PB | 409 | CG6606-PB | 1..409 | 1..409 | 2111 | 100 | Plus |
Rip11-PC | 420 | CG6606-PC | 1..408 | 1..408 | 2105 | 100 | Plus |
Rip11-PE | 815 | CG6606-PE | 1..305 | 1..305 | 1578 | 99.7 | Plus |
Rip11-PD | 826 | CG6606-PD | 1..305 | 1..305 | 1578 | 99.7 | Plus |
Rip11-PA | 832 | CG6606-PA | 1..305 | 1..305 | 1578 | 99.7 | Plus |
Rip11-PE | 815 | CG6606-PE | 706..815 | 300..409 | 545 | 97.3 | Plus |
Rip11-PD | 826 | CG6606-PD | 706..814 | 300..408 | 539 | 97.2 | Plus |
Rip11-PA | 832 | CG6606-PA | 706..813 | 300..407 | 535 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15080-PA | 822 | GI15080-PA | 1..292 | 1..293 | 1236 | 89.1 | Plus |
Dmoj\GI15080-PA | 822 | GI15080-PA | 714..822 | 300..409 | 528 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27020-PA | 890 | GL27020-PA | 1..339 | 1..302 | 1278 | 77.3 | Plus |
Dper\GL27020-PA | 890 | GL27020-PA | 780..890 | 300..409 | 518 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19718-PA | 854 | GA19718-PA | 1..300 | 1..300 | 1326 | 86.5 | Plus |
Dpse\GA19718-PA | 854 | GA19718-PA | 744..852 | 300..407 | 510 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22796-PA | 835 | GM22796-PA | 1..305 | 1..305 | 1606 | 98.7 | Plus |
Dsec\GM22796-PA | 835 | GM22796-PA | 709..816 | 300..407 | 553 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15625-PA | 926 | GD15625-PA | 65..359 | 11..305 | 1542 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18887-PA | 817 | GJ18887-PA | 1..288 | 1..288 | 1212 | 88.6 | Plus |
Dvir\GJ18887-PA | 817 | GJ18887-PA | 710..816 | 300..407 | 513 | 93.5 | Plus |
Translation from 334 to 1563
> GH05001.hyp MWSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVKDKAETS VNWNEECELKIPDQGNRAELTLTCLHRNNLGIDEFLGQATLPLNEMDVYD RPRAKWFKLESKPGKEKKNKERGELEVRIAFVVKSGSLTDLSKKDKHKSS IGQLASSVGGSLLSIGNGEKRRGIKKLAGSLSSKLHIRSKKKNQEAGADD SSSFGGSFASLGTPNSSNGRGQNGGSGRRRGGQRAGEADPGVISEDEDEF VFDNLSHKSSGSSLNIQRIGLQPPPVGTPNFTPRHPSPLLNNGVSGVGSG SAKDKYNNDNDSNSPSPKSTERIIIGHEKSGSHADRRSEISAQLAKKYEG KSREELMLIANGMENEALLQRQRVKELEDYLDNLLLRVMETHPKILQNPY SRTTSAKSG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rip11-PB | 409 | CG6606-PB | 1..409 | 1..409 | 2111 | 100 | Plus |
Rip11-PC | 420 | CG6606-PC | 1..408 | 1..408 | 2105 | 100 | Plus |
Rip11-PE | 815 | CG6606-PE | 1..305 | 1..305 | 1578 | 99.7 | Plus |
Rip11-PD | 826 | CG6606-PD | 1..305 | 1..305 | 1578 | 99.7 | Plus |
Rip11-PA | 832 | CG6606-PA | 1..305 | 1..305 | 1578 | 99.7 | Plus |
Rip11-PE | 815 | CG6606-PE | 706..815 | 300..409 | 545 | 97.3 | Plus |
Rip11-PD | 826 | CG6606-PD | 706..814 | 300..408 | 539 | 97.2 | Plus |