Clone GH05093 Report

Search the DGRC for GH05093

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:50
Well:93
Vector:pOT2
Associated Gene/TranscriptCG9162-RA
Protein status:GH05093.pep: wuzgold
Preliminary Size:1434
Sequenced Size:1257

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9162 2001-01-01 Release 2 assignment
CG9162 2001-09-19 Blastp of sequenced clone
CG9162 2003-01-01 Sim4 clustering to Release 3
CG9162 2008-04-29 Release 5.5 accounting
CG9162 2008-08-15 Release 5.9 accounting
CG9162 2008-12-18 5.12 accounting

Clone Sequence Records

GH05093.complete Sequence

1257 bp (1257 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060240

> GH05093.complete
TTTACGTTCGCCTAAGCGGCGCGTGTGCTCGTAAAAGCCGATCGTCAAGT
GGGTGACGGCGGTTGGAGGTGGAGGTGGGTCCGTCCGTTTGGCCCATTGA
AGCAGTGAAGTCAATGCCCGGCTGAGATTGGCCTTGTGGAATGGTCAAGG
TTGCCTATTGGCAATACTTCCGCATTCCGTATACATTACTAAACTACAGG
CAGATTTCATTAAAGAAGTGGATACATTACAAGAACTTCAATCTTCTTCA
GTCCTCTGAACTCTTATTCGTCAACTGCAATTTGCCTTGAGATAGGAACT
ATATGAAGAAGAAGAGAGCACACACTCATTCACTCACTCACGCACACACA
CAAGTGCAGGCCACGCGCAGCAGAAAGGCAAACAGCGGAAAATCGAAAAA
TCAGGCGGCAAGACCGCAACAACTGCAGAGAAGCATGGATGCAGAGAGGC
GGAGTGCCGGGAAGTGCTGTCTAGCTATTATAAGCCGTTCTATAGTTGGG
CGACGGAGTGTGAGCGAGCGAAGTGGTGTGGGGGAGGGGTGCAGCCAGCA
TGTGCAGGCGATAAATGCAACGTGTAATGTGGGGAGGCAGTGCACGGGTT
TTCGACATCCGATGTCCATTGCAAATGGAAGAGGACGTGCAATGGTTTGC
GATGCACGTGTTGGCGGTCAATGAACCGAATGGGCGAGATAGAGAGAGCG
AGCGAGAAAAGCAGAAATGCAGGGGCAGATATGTAAGTAGTGTAAGTGCA
GGGAGAGCAAAGATACGAAGAGAGTAAGGGCGAGAGCGCACTGCCGTTTA
ATGCAGTTATTATTGACGCAGTCTGTCTACGTGCAGAATGTCAATGCCGC
TTACCCTTCACACACCCCTCCCACATTTCAAGCCACCTGTTATCGATACA
AGTTATCGATCATTGAGTACAGTGGAGCTACATTGTATGCTGCACTGAAT
ATGGTTAACAAACTGCATGCCTAATGGAACCGACAATTCCCCAGCGATAA
TTTAGCCAAGAAACGAATGGCGCCTGCGGTTTAAGGCCAATTGCATTATG
AATGTACATATGCATGGATTAGTCGGAAAAACAAATGAAAACAACTGCGA
AATGTGTTTTGTAATCTTTTCTTTTTCGCGTGCAGCCTGTTTTCGCAATT
TGTCAAGTTACGTTCCTCCTTATGTAAATACCAACTGCAAAAAAAAAAAA
AAAAACAGTTTGAGCTTCAGTAAACCATGTTTTTCAGACAAAAAAAAAAA
AAAAAAA

GH05093.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9162-RA 1240 CG9162-RA 1..1240 1..1240 6200 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6077736..6078787 188..1239 5260 100 Plus
chr2L 23010047 chr2L 6077504..6077690 1..187 935 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6078685..6079737 188..1240 5265 100 Plus
2L 23513712 2L 6078453..6078639 1..187 935 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6078685..6079737 188..1240 5265 100 Plus
2L 23513712 2L 6078453..6078639 1..187 935 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:12:30 has no hits.

GH05093.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:13:33 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6077504..6077690 1..187 100 -> Plus
chr2L 6077736..6078787 188..1239 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:17:14 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 1..372 303..674 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:53 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 1..372 303..674 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:44 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 1..372 303..674 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:52 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 1..1239 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:53 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 1..1239 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:44 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 1..1239 1..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:33 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6078453..6078639 1..187 100 -> Plus
2L 6078685..6079736 188..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:33 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6078453..6078639 1..187 100 -> Plus
2L 6078685..6079736 188..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:33 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6078453..6078639 1..187 100 -> Plus
2L 6078685..6079736 188..1239 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:31 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078453..6078639 1..187 100 -> Plus
arm_2L 6078685..6079736 188..1239 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:31 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078453..6078639 1..187 100 -> Plus
arm_2L 6078685..6079736 188..1239 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:31 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078453..6078639 1..187 100 -> Plus
arm_2L 6078685..6079736 188..1239 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:19 Download gff for GH05093.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6078453..6078639 1..187 100 -> Plus
2L 6078685..6079736 188..1239 100   Plus

GH05093.hyp Sequence

Translation from 302 to 673

> GH05093.hyp
MKKKRAHTHSLTHAHTQVQATRSRKANSGKSKNQAARPQQLQRSMDAERR
SAGKCCLAIISRSIVGRRSVSERSGVGEGCSQHVQAINATCNVGRQCTGF
RHPMSIANGRGRAMVCDARVGGQ*
Sequence GH05093.hyp has no blast hits.

GH05093.pep Sequence

Translation from 302 to 673

> GH05093.pep
MKKKRAHTHSLTHAHTQVQATRSRKANSGKSKNQAARPQQLQRSMDAERR
SAGKCCLAIISRSIVGRRSVSERSGVGEGCSQHVQAINATCNVGRQCTGF
RHPMSIANGRGRAMVCDARVGGQ*

GH05093.pep Blast Records

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19450-PA 55 GM19450-PA 1..49 1..53 174 75.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17828-PA 55 GD17828-PA 1..49 1..53 180 77.4 Plus