GH05093.complete Sequence
1257 bp (1257 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060240
> GH05093.complete
TTTACGTTCGCCTAAGCGGCGCGTGTGCTCGTAAAAGCCGATCGTCAAGT
GGGTGACGGCGGTTGGAGGTGGAGGTGGGTCCGTCCGTTTGGCCCATTGA
AGCAGTGAAGTCAATGCCCGGCTGAGATTGGCCTTGTGGAATGGTCAAGG
TTGCCTATTGGCAATACTTCCGCATTCCGTATACATTACTAAACTACAGG
CAGATTTCATTAAAGAAGTGGATACATTACAAGAACTTCAATCTTCTTCA
GTCCTCTGAACTCTTATTCGTCAACTGCAATTTGCCTTGAGATAGGAACT
ATATGAAGAAGAAGAGAGCACACACTCATTCACTCACTCACGCACACACA
CAAGTGCAGGCCACGCGCAGCAGAAAGGCAAACAGCGGAAAATCGAAAAA
TCAGGCGGCAAGACCGCAACAACTGCAGAGAAGCATGGATGCAGAGAGGC
GGAGTGCCGGGAAGTGCTGTCTAGCTATTATAAGCCGTTCTATAGTTGGG
CGACGGAGTGTGAGCGAGCGAAGTGGTGTGGGGGAGGGGTGCAGCCAGCA
TGTGCAGGCGATAAATGCAACGTGTAATGTGGGGAGGCAGTGCACGGGTT
TTCGACATCCGATGTCCATTGCAAATGGAAGAGGACGTGCAATGGTTTGC
GATGCACGTGTTGGCGGTCAATGAACCGAATGGGCGAGATAGAGAGAGCG
AGCGAGAAAAGCAGAAATGCAGGGGCAGATATGTAAGTAGTGTAAGTGCA
GGGAGAGCAAAGATACGAAGAGAGTAAGGGCGAGAGCGCACTGCCGTTTA
ATGCAGTTATTATTGACGCAGTCTGTCTACGTGCAGAATGTCAATGCCGC
TTACCCTTCACACACCCCTCCCACATTTCAAGCCACCTGTTATCGATACA
AGTTATCGATCATTGAGTACAGTGGAGCTACATTGTATGCTGCACTGAAT
ATGGTTAACAAACTGCATGCCTAATGGAACCGACAATTCCCCAGCGATAA
TTTAGCCAAGAAACGAATGGCGCCTGCGGTTTAAGGCCAATTGCATTATG
AATGTACATATGCATGGATTAGTCGGAAAAACAAATGAAAACAACTGCGA
AATGTGTTTTGTAATCTTTTCTTTTTCGCGTGCAGCCTGTTTTCGCAATT
TGTCAAGTTACGTTCCTCCTTATGTAAATACCAACTGCAAAAAAAAAAAA
AAAAACAGTTTGAGCTTCAGTAAACCATGTTTTTCAGACAAAAAAAAAAA
AAAAAAA
GH05093.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9162-RA | 1240 | CG9162-RA | 1..1240 | 1..1240 | 6200 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 6077736..6078787 | 188..1239 | 5260 | 100 | Plus |
chr2L | 23010047 | chr2L | 6077504..6077690 | 1..187 | 935 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6078685..6079737 | 188..1240 | 5265 | 100 | Plus |
2L | 23513712 | 2L | 6078453..6078639 | 1..187 | 935 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6078685..6079737 | 188..1240 | 5265 | 100 | Plus |
2L | 23513712 | 2L | 6078453..6078639 | 1..187 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-15 17:12:30 has no hits.
GH05093.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:13:33 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 6077504..6077690 | 1..187 | 100 | -> | Plus |
chr2L | 6077736..6078787 | 188..1239 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:17:14 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 1..372 | 303..674 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:53 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 1..372 | 303..674 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:44 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 1..372 | 303..674 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:52 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 1..1239 | 1..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:53 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 1..1239 | 1..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:44 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 1..1239 | 1..1239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:33 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078453..6078639 | 1..187 | 100 | -> | Plus |
2L | 6078685..6079736 | 188..1239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:33 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078453..6078639 | 1..187 | 100 | -> | Plus |
2L | 6078685..6079736 | 188..1239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:33 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078453..6078639 | 1..187 | 100 | -> | Plus |
2L | 6078685..6079736 | 188..1239 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:31 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078453..6078639 | 1..187 | 100 | -> | Plus |
arm_2L | 6078685..6079736 | 188..1239 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:31 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078453..6078639 | 1..187 | 100 | -> | Plus |
arm_2L | 6078685..6079736 | 188..1239 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:31 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078453..6078639 | 1..187 | 100 | -> | Plus |
arm_2L | 6078685..6079736 | 188..1239 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:19 Download gff for
GH05093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078453..6078639 | 1..187 | 100 | -> | Plus |
2L | 6078685..6079736 | 188..1239 | 100 | | Plus |
GH05093.hyp Sequence
Translation from 302 to 673
> GH05093.hyp
MKKKRAHTHSLTHAHTQVQATRSRKANSGKSKNQAARPQQLQRSMDAERR
SAGKCCLAIISRSIVGRRSVSERSGVGEGCSQHVQAINATCNVGRQCTGF
RHPMSIANGRGRAMVCDARVGGQ*
Sequence GH05093.hyp has no blast hits.
GH05093.pep Sequence
Translation from 302 to 673
> GH05093.pep
MKKKRAHTHSLTHAHTQVQATRSRKANSGKSKNQAARPQQLQRSMDAERR
SAGKCCLAIISRSIVGRRSVSERSGVGEGCSQHVQAINATCNVGRQCTGF
RHPMSIANGRGRAMVCDARVGGQ*
GH05093.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19450-PA | 55 | GM19450-PA | 1..49 | 1..53 | 174 | 75.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17828-PA | 55 | GD17828-PA | 1..49 | 1..53 | 180 | 77.4 | Plus |