Clone GH05104 Report

Search the DGRC for GH05104

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:51
Well:4
Vector:pOT2
Associated Gene/TranscriptCG13607-RA
Protein status:GH05104.pep: gold
Preliminary Size:1394
Sequenced Size:2122

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13607 2002-01-01 Sim4 clustering to Release 2
CG13607 2002-05-01 Blastp of sequenced clone
CG13607 2003-01-01 Sim4 clustering to Release 3
CG13607 2008-04-29 Release 5.5 accounting
CG13607 2008-08-15 Release 5.9 accounting
CG13607 2008-12-18 5.12 accounting

Clone Sequence Records

GH05104.complete Sequence

2122 bp (2122 high quality bases) assembled on 2002-05-01

GenBank Submission: AY102657

> GH05104.complete
AGCAGCACGGCAGCGATAATCGGAGATTACACGGCGAAGATAATACGGAA
TACGCGAGTGAGAGAGTGAAGATGTCCCAGACCCTGGACGATCTGCTGTT
GCGCCAGGAGCACGCCCGGCAATTGCGCCAGGCCACGCGCTCCAAGTTCC
GGCGCATCAATTCGCTGGATCTAATACCGGAGCATCCCAGCCAATCGGAG
GAGGAGGAGGACAAGGAATCCCAGACGGCCCACAAGCACTTTGTCACCCT
GAGACGACAGCGGACGGCTGATGGCAATCTGCTGAGGCATCAGTTTCAGA
CGCAGTCGCCGCCACAACCCAATTTAGGCACACGGGTCCTGCTCTTCGGA
CCACAACTGCTGATGCGTCTGGTGCTGACCATCTTGAGATACGTCCTCTA
CATACCACTGTCCATTGCGGCGCCAAGCTTTTGGTTGTCCGCCCTGCTCT
GGATCTTTTGGAAACTGCTGCGGGTACCCATTGCGTTGGTCAAGTGGCTA
CTGAGCGGCGAGGAGGAGCTGGGTGCAGTGCAGCGACAGAAGACCATACT
CCTCAGCTGCGGCAGCACCATACAGACCCTACATTTGGCCAGGAACTTCT
ACGGATCCGGCGCCCGTGTGGTGGTCTTTGAGTTCGAGGGTTTGTTCGGA
TTGGCCAGATTTTCCACAGCGGTGGACAAATTCTATGTGGTGCCACGGCC
AACGGCCAGTAATCCGGATCAGTACATAGCCGCCCTGTGCCACATCGTGA
AGAAGGAACGACCCTCGGTCTATATACCCGTTTGTGCCACCAGTCCGGCA
TACTATGATTCCCTGGCCCGACCACATCTGGAGGTCCTGGGCTGTGCCAG
TTTCATACCCGGCGTGCAGGAGACACTGCAGCTGGATGACTGCCTCCAGC
TCTTTCAGAGATGCGAACAGCAACAGATGGCTCTGCCAGCCCATGTGGTG
CTGACAGCTCCACGGCAATTGCAGCAGATCTACGAGAGCGGTTTCGTGGG
CAGCTATAGGAACATACTCATGGCCGCAGGGATGCAGGGAGTCCTGGAGC
GGCACAAGTACATACTGCCCAATAGGCGGGCGGAACTAAAGCTGAATCAG
CACGATATCAGCGAGCGGCAACCGTGGCTAGTGGTAAGGGATCAGCCGGG
CTATCACCACTATGTGACCTGCACCACCGTCAAGGATTCACGGGTGGTGG
CCAATGTGAGTTGTCGGGTTGAGCATCATACCAAGAATCTGATCCCAGTG
CCCAGGGACGATGAGGCGCAGATAGAACTCTGGTTGCGCTCCTTCTTTGC
CAAGGTGCGCTTCCAGAGGCCCATCAATGGGCATATAAGCTTCCGCCTGG
TCAAGAGCCCCGCCCATGGTGGTCAGTTCGTGCCTCTGGGCACGCGACTG
GGCGTGGCCCTGCCCTACATATGCCACAATCGATCGCATGCCCAGTTGCT
GTGCCGTGCGATGAAGTGCATCCACAGGCGGGGACTGCCCGAGGATGAAC
TGCCCAACTGGAGCTGGTCGGCGCTGGAGAGAACCACTTCGACGACGGCG
CTGGACAAGCGGGAGGCATTGTTTGCCTACTGGGATCCACTACCCTATTG
CGCATACTATCATTTCCAGCTGCCCCTGAAGAACGTGAAGCTGTTTTTGC
AGCGCCGGAATCGCAGCGCGACCAAAACCTTATCGCCACGCATCACGGTG
CCGGTTCATTGAACGGAGCGGCCGGAGCTGGAGCCACTGCATCGGCTTTA
AGCATCGAACAGCAGCATCTAGCCTCTAGCATCCAGCATCAGGCGTTTCT
TTAGCGAGAGAGATTACACAGACTGATCAATAATGGAATATATAGAAATC
TATATAGCATATATATGTACATATATATATATATATATATATATATATAT
ATATATATATATATATTTTTGCATTCTATACTATTTCTTTTTTTTTGTTT
ACGCCATTGGGGTTCAACATCCATCTAAGAAGATTAGGCCGTTAAAAAAC
AAACGTGTACCGCTCACACACACACACACACACACCACATACACACATGC
ACGAATATAGCTTTTATACCACAATATATTGTACAATAAATAATATTTAT
ATTTTAAAAAAAAAAAAAAAAA

GH05104.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13607-RA 2103 CG13607-RA 1..2103 3..2105 10515 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19937361..19939465 2105..1 10225 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24114041..24116147 2107..1 10535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23854872..23856978 2107..1 10535 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:41:47 has no hits.

GH05104.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:42:34 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19937629..19939465 1..1837 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:17:21 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RA 1..1641 72..1712 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:52 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RC 1..1641 72..1712 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:24 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RA 1..1641 72..1712 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:23 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RA 1..1641 72..1712 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:45 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RA 1..1641 72..1712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:26 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RA 1..2103 3..2105 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:52 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RC 106..2210 1..2105 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:24 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RA 25..2129 1..2105 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:23 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RA 1..2103 3..2105 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:45 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
CG13607-RA 25..2129 1..2105 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:34 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24114043..24116147 1..2105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:34 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24114043..24116147 1..2105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:34 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24114043..24116147 1..2105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:24 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19939765..19941869 1..2105 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:56 Download gff for GH05104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23854874..23856978 1..2105 100   Minus

GH05104.hyp Sequence

Translation from 2 to 1711

> GH05104.hyp
QHGSDNRRLHGEDNTEYASERVKMSQTLDDLLLRQEHARQLRQATRSKFR
RINSLDLIPEHPSQSEEEEDKESQTAHKHFVTLRRQRTADGNLLRHQFQT
QSPPQPNLGTRVLLFGPQLLMRLVLTILRYVLYIPLSIAAPSFWLSALLW
IFWKLLRVPIALVKWLLSGEEELGAVQRQKTILLSCGSTIQTLHLARNFY
GSGARVVVFEFEGLFGLARFSTAVDKFYVVPRPTASNPDQYIAALCHIVK
KERPSVYIPVCATSPAYYDSLARPHLEVLGCASFIPGVQETLQLDDCLQL
FQRCEQQQMALPAHVVLTAPRQLQQIYESGFVGSYRNILMAAGMQGVLER
HKYILPNRRAELKLNQHDISERQPWLVVRDQPGYHHYVTCTTVKDSRVVA
NVSCRVEHHTKNLIPVPRDDEAQIELWLRSFFAKVRFQRPINGHISFRLV
KSPAHGGQFVPLGTRLGVALPYICHNRSHAQLLCRAMKCIHRRGLPEDEL
PNWSWSALERTTSTTALDKREALFAYWDPLPYCAYYHFQLPLKNVKLFLQ
RRNRSATKTLSPRITVPVH*

GH05104.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13607-PC 546 CG13607-PC 1..546 24..569 2876 100 Plus
CG13607-PA 546 CG13607-PA 1..546 24..569 2876 100 Plus

GH05104.pep Sequence

Translation from 71 to 1711

> GH05104.pep
MSQTLDDLLLRQEHARQLRQATRSKFRRINSLDLIPEHPSQSEEEEDKES
QTAHKHFVTLRRQRTADGNLLRHQFQTQSPPQPNLGTRVLLFGPQLLMRL
VLTILRYVLYIPLSIAAPSFWLSALLWIFWKLLRVPIALVKWLLSGEEEL
GAVQRQKTILLSCGSTIQTLHLARNFYGSGARVVVFEFEGLFGLARFSTA
VDKFYVVPRPTASNPDQYIAALCHIVKKERPSVYIPVCATSPAYYDSLAR
PHLEVLGCASFIPGVQETLQLDDCLQLFQRCEQQQMALPAHVVLTAPRQL
QQIYESGFVGSYRNILMAAGMQGVLERHKYILPNRRAELKLNQHDISERQ
PWLVVRDQPGYHHYVTCTTVKDSRVVANVSCRVEHHTKNLIPVPRDDEAQ
IELWLRSFFAKVRFQRPINGHISFRLVKSPAHGGQFVPLGTRLGVALPYI
CHNRSHAQLLCRAMKCIHRRGLPEDELPNWSWSALERTTSTTALDKREAL
FAYWDPLPYCAYYHFQLPLKNVKLFLQRRNRSATKTLSPRITVPVH*

GH05104.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18897-PA 545 GF18897-PA 1..545 1..546 2736 94.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12375-PA 546 GG12375-PA 1..546 1..546 2880 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19095-PA 554 GH19095-PA 1..554 1..546 2215 77.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13607-PC 546 CG13607-PC 1..546 1..546 2876 100 Plus
CG13607-PA 546 CG13607-PA 1..546 1..546 2876 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23431-PA 555 GI23431-PA 1..555 1..546 2213 79 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20611-PA 390 GL20611-PA 195..390 353..546 963 89.8 Plus
Dper\GL20609-PA 154 GL20609-PA 1..149 1..141 474 73.2 Plus
Dper\GL20611-PA 390 GL20611-PA 1..30 168..197 155 96.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12400-PA 552 GA12400-PA 1..552 1..546 2496 86.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23513-PA 546 GM23513-PA 1..546 1..546 2895 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18323-PA 546 GD18323-PA 1..546 1..546 2898 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14534-PA 566 GJ14534-PA 1..566 1..546 2226 76.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11935-PA 549 GK11935-PA 1..549 1..546 2483 84.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10829-PA 547 GE10829-PA 1..547 1..546 2876 98.5 Plus