Clone GH05218 Report

Search the DGRC for GH05218

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:18
Vector:pOT2
Associated Gene/TranscriptCG9629-RA
Protein status:GH05218.pep: gold
Preliminary Size:2200
Sequenced Size:2066

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9629 2001-01-01 Release 2 assignment
CG9629 2001-10-10 Blastp of sequenced clone
CG9629 2003-01-01 Sim4 clustering to Release 3
CG9629 2008-04-29 Release 5.5 accounting
CG9629 2008-08-15 Release 5.9 accounting
CG9629 2008-12-18 5.12 accounting

Clone Sequence Records

GH05218.complete Sequence

2066 bp (2066 high quality bases) assembled on 2001-10-10

GenBank Submission: AY089492

> GH05218.complete
TCAGTCGTTCCATCGATCCGGACACCTACCAACATGTTGGCACAATTGAG
AAATATTTCGAAGCTGGCGCTGCCGCGCCGCCTCGTTACCCAAACCGCCA
GCTACTCATCGTCCTCGTCATATCTCATTGACCAGCCGGAGTACAGTTTC
CTGAAAGAATTGGGACTGGAGCGCGACAATCCAGGTGTTTATTCGGGTCA
GTGGCAGGGTCGTGGGCCATCCGTTACCAGCTACGATCCCGGAACTGGTC
AACCGATTGCCAAAGTGCGTCAGGGAAATGTCCAGGAGCTCGAGCATACC
ATCGGGCTGGCGGTGGAAGCCTACAAGCAGTGGCGACAGGTTCCAGCTCC
CGTTCGCGGCGAAATAGTGCGCCAAATCGGCGATGAGCTGAGAAAGTACA
AGGAACCACTGGGAAAGCTCGTCTCCCTGGAGGTGGGCAAAATCTACAGC
GAGGGACAGGGCGAGGTTCAGGAGTTCATAGATATCTGCGACTATGCGGT
TGGCCTCTCAAGGATTTACTCCGGCCAGCTGATCAACTCGGAGCGTGCGG
ATCATTCGATTCTGGAGGCCTGGCGTCCGCTGGGAGTGGTGGGCGTTATT
TCGGCCTACAATTTTCCCAATGCTGTGTTCGGCTGGAATGCTGCCATCGC
CCTAACCACCGGCAACAGTGTGCTGTGGAAAGGAGCTCCCAGCACTCCCT
TGGTCTCGGTGGCGACCACAAAAATTGTGGCTGAAGTGCTGCGTAGGAAC
AATCTGCCGCCGGTGGTGACCCTCTGCCAAGGAGGAACCGATGTTGGTCA
GACCTTGGTGGCTGATAAGAGAGTTAACCTCGTTTCCTTCACCGGCAGCT
GCCAAACTGGTCGGGATGTGGGTGTTGAAGTGCAGCGCAGATTCGGCAAG
GTGATCCTCGAGCTAGGCGGCAATAATGCCCTAATCATCGATGAATCTGC
CAACGTGAAGATGGCCCTGGACGCCGCACTTTTCGGCTGCATTGGCACCA
GTGGTCAAAGATGCACCACCACCAGGAGGATTATTGTCCACGAAAAGCTG
CACGATCAGTTCGTAAAGGAGCTGGTTGGTAAATATAAGCAGCTAATTTC
CAAGATTGGACACCAGCTCGAAGCTCAAACTCTGGTGGGTCCCGTGCACA
CGCAACAAAACGTGGAGAACTACAAGGCGGCCATCGCGGAAGCGAAATCC
TTAGGAGGAACGGTGGCCTTCGGAGGTAATGTCATCCAGCGGGATGGTTT
TTACGTAGAGCCCACAGTGATCACTGGATTGCCGCACGATGCCAGCGTTG
TCCATCGCGAAACCTTTGCACCAATTGTGTACATCCTCAAAGCCAAAAAC
GTGGACCAGGCCATCGAATGGAACAATGAGGTGGAACAGGGCTTATCCTC
TGCCATTTTCACGGAGAACATCGGGCAGGCGTTCAAGTGGATTGGAGCCA
AGGGTTCCGATTGCGGTATAGTTAACATCAACACCACCACCAACGGCGCC
GAGATTGGTGGAGCTTTCGGAGGCGAAAAAGCCACTGGAGGAGGTCGCGA
GTCCGGATCCGATGCCTGGAAGCAGTATTGCAAGCGGGCCACCATTACAG
TCAATCACTCCGGAGAATTGGCCTGCGCCCAGGGTGTTGTCTTCAATGTG
GAGTAGAAAACACATACGATCAATTTTAATGTGCTACAATTTACAATACT
ATTACATATAATGTCCAAAACTAAATGCAACTGATATAATTCTTCCTATT
CCGTGCCGATTTCAAAGCGCCAGAAGTCCACCTCAATATCCTTCGACTTC
TGCTTGTGAAACTTGTAGCTGGCGTCGATGTTGTACCGGAGTTCGGCGAC
CACTGAGCCGCGGGCGCCCCATTCCAGTGCCTTTTTCTGAATGTACGACC
TGCGAACAATTAAAATCGATATTTAAATTGGCTTTGATGTACTATTCCAC
AGTTGTTTAGGCTTGGCTATTCTTCCATAAAAAACAGGAAGGGGTCGAAT
AATAAGATACCCTTTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

GH05218.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9629-RA 2110 CG9629-RA 90..2110 1..2021 10105 100 Plus
nc_13463.a 548 nc_13463.a 298..548 1899..1649 1255 100 Minus
CG9666-RB 1030 CG9666-RB 785..1030 1900..1655 1230 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19255939..19257926 2020..33 9850 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19266470..19268460 2023..33 9955 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19259570..19261560 2023..33 9955 100 Minus
3L 28103327 3L 19261949..19261980 32..1 160 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:27:24 has no hits.

GH05218.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:28:29 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19255939..19257926 33..2020 99 <- Minus
chr3L 19258315..19258346 1..32 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:17:35 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 1..1623 34..1656 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:45 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 1..1623 34..1656 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:45:22 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 1..1623 34..1656 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:53 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 1..1623 34..1656 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:46:18 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 1..1623 34..1656 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:35 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 30..2049 1..2020 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:45 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 30..2049 1..2020 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:45:22 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 34..2053 1..2020 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:53 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 30..2049 1..2020 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:46:18 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9629-RA 34..2053 1..2020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:28:29 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19266473..19268460 33..2020 100 <- Minus
3L 19268849..19268880 1..32 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:28:29 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19266473..19268460 33..2020 100 <- Minus
3L 19268849..19268880 1..32 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:28:29 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19266473..19268460 33..2020 100 <- Minus
3L 19268849..19268880 1..32 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:45:22 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19259573..19261560 33..2020 100 <- Minus
arm_3L 19261949..19261980 1..32 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:04 Download gff for GH05218.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19259573..19261560 33..2020 100 <- Minus
3L 19261949..19261980 1..32 100   Minus

GH05218.hyp Sequence

Translation from 1 to 1655

> GH05218.hyp
SVVPSIRTPTNMLAQLRNISKLALPRRLVTQTASYSSSSSYLIDQPEYSF
LKELGLERDNPGVYSGQWQGRGPSVTSYDPGTGQPIAKVRQGNVQELEHT
IGLAVEAYKQWRQVPAPVRGEIVRQIGDELRKYKEPLGKLVSLEVGKIYS
EGQGEVQEFIDICDYAVGLSRIYSGQLINSERADHSILEAWRPLGVVGVI
SAYNFPNAVFGWNAAIALTTGNSVLWKGAPSTPLVSVATTKIVAEVLRRN
NLPPVVTLCQGGTDVGQTLVADKRVNLVSFTGSCQTGRDVGVEVQRRFGK
VILELGGNNALIIDESANVKMALDAALFGCIGTSGQRCTTTRRIIVHEKL
HDQFVKELVGKYKQLISKIGHQLEAQTLVGPVHTQQNVENYKAAIAEAKS
LGGTVAFGGNVIQRDGFYVEPTVITGLPHDASVVHRETFAPIVYILKAKN
VDQAIEWNNEVEQGLSSAIFTENIGQAFKWIGAKGSDCGIVNINTTTNGA
EIGGAFGGEKATGGGRESGSDAWKQYCKRATITVNHSGELACAQGVVFNV
E*

GH05218.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9629-PA 540 CG9629-PA 1..540 12..551 2786 100 Plus
Ssadh-PE 509 CG4685-PE 51..495 79..526 478 26.8 Plus
Ssadh-PD 509 CG4685-PD 51..495 79..526 478 26.8 Plus
Ssadh-PC 509 CG4685-PC 51..495 79..526 478 26.8 Plus
Ssadh-PB 509 CG4685-PB 51..495 79..526 478 26.8 Plus

GH05218.pep Sequence

Translation from 33 to 1655

> GH05218.pep
MLAQLRNISKLALPRRLVTQTASYSSSSSYLIDQPEYSFLKELGLERDNP
GVYSGQWQGRGPSVTSYDPGTGQPIAKVRQGNVQELEHTIGLAVEAYKQW
RQVPAPVRGEIVRQIGDELRKYKEPLGKLVSLEVGKIYSEGQGEVQEFID
ICDYAVGLSRIYSGQLINSERADHSILEAWRPLGVVGVISAYNFPNAVFG
WNAAIALTTGNSVLWKGAPSTPLVSVATTKIVAEVLRRNNLPPVVTLCQG
GTDVGQTLVADKRVNLVSFTGSCQTGRDVGVEVQRRFGKVILELGGNNAL
IIDESANVKMALDAALFGCIGTSGQRCTTTRRIIVHEKLHDQFVKELVGK
YKQLISKIGHQLEAQTLVGPVHTQQNVENYKAAIAEAKSLGGTVAFGGNV
IQRDGFYVEPTVITGLPHDASVVHRETFAPIVYILKAKNVDQAIEWNNEV
EQGLSSAIFTENIGQAFKWIGAKGSDCGIVNINTTTNGAEIGGAFGGEKA
TGGGRESGSDAWKQYCKRATITVNHSGELACAQGVVFNVE*

GH05218.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10773-PA 537 GF10773-PA 1..537 1..540 2648 93.1 Plus
Dana\GF17265-PA 507 GF17265-PA 49..493 68..515 474 28.8 Plus
Dana\GF14331-PA 913 GF14331-PA 454..913 68..525 465 27.5 Plus
Dana\GF22728-PA 520 GF22728-PA 54..513 61..523 454 28.5 Plus
Dana\GF22966-PA 485 GF22966-PA 25..482 61..523 422 28.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13416-PA 540 GG13416-PA 1..540 1..540 2802 98 Plus
Dere\GG12233-PA 509 GG12233-PA 51..495 68..515 472 27.7 Plus
Dere\GG21301-PA 913 GG21301-PA 454..913 68..525 464 27.1 Plus
Dere\GG25345-PA 520 GG25345-PA 61..513 68..523 443 27.9 Plus
Dere\GG12158-PA 485 GG12158-PA 25..482 61..523 441 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14418-PA 540 GH14418-PA 1..540 1..540 2495 86.3 Plus
Dgri\GH13227-PA 518 GH13227-PA 33..511 49..523 496 27.8 Plus
Dgri\GH18609-PA 501 GH18609-PA 43..487 68..515 490 28.9 Plus
Dgri\GH13324-PA 521 GH13324-PA 55..514 61..523 462 28.1 Plus
Dgri\GH13317-PA 913 GH13317-PA 454..913 68..525 453 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9629-PA 540 CG9629-PA 1..540 1..540 2786 100 Plus
Ssadh-PE 509 CG4685-PE 51..495 68..515 478 26.8 Plus
Ssadh-PD 509 CG4685-PD 51..495 68..515 478 26.8 Plus
Ssadh-PC 509 CG4685-PC 51..495 68..515 478 26.8 Plus
Ssadh-PB 509 CG4685-PB 51..495 68..515 478 26.8 Plus
Ssadh-PA 509 CG4685-PA 51..495 68..515 478 26.8 Plus
Aldh-PB 520 CG3752-PB 54..513 61..523 455 28.7 Plus
Aldh-PA 520 CG3752-PA 54..513 61..523 455 28.7 Plus
CG8665-PA 913 CG8665-PA 454..913 68..525 454 27.1 Plus
CG31075-PA 485 CG31075-PA 25..482 61..523 453 27.7 Plus
CG31075-PB 508 CG31075-PB 48..505 61..523 453 27.7 Plus
CG17896-PA 511 CG17896-PA 37..490 67..522 355 24.4 Plus
CG17896-PB 520 CG17896-PB 46..499 67..522 355 24.4 Plus
Aldh-III-PR 497 CG11140-PR 104..422 182..515 253 26.9 Plus
Aldh-III-PM 498 CG11140-PM 104..422 182..515 253 26.9 Plus
Aldh-III-PL 498 CG11140-PL 104..422 182..515 253 26.9 Plus
Aldh-III-PK 498 CG11140-PK 104..422 182..515 253 26.9 Plus
Aldh-III-PI 498 CG11140-PI 104..422 182..515 253 26.9 Plus
Aldh-III-PP 563 CG11140-PP 170..488 182..515 253 26.9 Plus
Aldh-III-PN 563 CG11140-PN 169..487 182..515 253 26.9 Plus
Aldh-III-PE 497 CG11140-PE 104..422 182..515 248 26.1 Plus
Aldh-III-PS 498 CG11140-PS 104..422 182..515 248 26.1 Plus
Aldh-III-PU 501 CG11140-PU 104..422 182..515 248 26.1 Plus
Aldh-III-PO 563 CG11140-PO 169..487 182..515 248 26.1 Plus
Aldh-III-PQ 564 CG11140-PQ 170..488 182..515 248 26.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13547-PA 539 GI13547-PA 1..539 1..540 2484 86.1 Plus
Dmoj\GI18107-PA 499 GI18107-PA 21..492 51..523 496 28.5 Plus
Dmoj\GI10356-PA 489 GI10356-PA 31..475 68..515 495 29.3 Plus
Dmoj\GI18106-PA 510 GI18106-PA 27..503 46..523 495 28.4 Plus
Dmoj\GI17663-PA 519 GI17663-PA 53..512 61..523 471 28.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20912-PA 537 GL20912-PA 1..537 1..540 2550 88.9 Plus
Dper\GL26144-PA 520 GL26144-PA 12..513 17..523 484 27 Plus
Dper\GL21675-PA 489 GL21675-PA 15..475 54..515 472 29.1 Plus
Dper\GL26664-PA 913 GL26664-PA 454..913 68..525 469 27.1 Plus
Dper\GL23630-PA 485 GL23630-PA 25..482 61..523 453 27.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21924-PA 537 GA21924-PA 1..537 1..540 2556 88.9 Plus
Dpse\GA25309-PA 520 GA25309-PA 12..513 17..523 491 27 Plus
Dpse\GA18355-PA 505 GA18355-PA 28..491 51..515 474 28.9 Plus
Dpse\GA21245-PA 913 GA21245-PA 454..913 68..525 470 27.1 Plus
Dpse\GA22496-PA 485 GA22496-PA 25..482 61..523 452 27.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14883-PA 540 GM14883-PA 1..540 1..540 2821 98.7 Plus
Dsec\GM10233-PA 509 GM10233-PA 51..495 68..515 476 27.9 Plus
Dsec\GM23412-PA 913 GM23412-PA 454..913 68..525 459 26.9 Plus
Dsec\GM17439-PA 520 GM17439-PA 61..513 68..523 450 28.1 Plus
Dsec\GM10152-PA 485 GM10152-PA 25..482 61..523 442 27.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12292-PA 540 GD12292-PA 1..540 1..540 2809 98.1 Plus
Dsim\GD18186-PA 509 GD18186-PA 51..495 68..515 472 27.7 Plus
Dsim\GD24321-PA 913 GD24321-PA 454..913 68..525 463 27.3 Plus
Dsim\GD18107-PA 485 GD18107-PA 25..482 61..523 436 27.5 Plus
Dsim\GD23600-PA 538 GD23600-PA 83..531 69..523 430 28.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11906-PA 542 GJ11906-PA 1..542 1..540 2503 86.4 Plus
Dvir\GJ17859-PA 519 GJ17859-PA 53..512 61..523 482 28.9 Plus
Dvir\GJ10208-PA 501 GJ10208-PA 43..487 68..515 480 28.6 Plus
Dvir\GJ16294-PA 527 GJ16294-PA 43..514 51..523 480 27.6 Plus
Dvir\GJ17852-PA 913 GJ17852-PA 454..913 68..525 469 27.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19673-PA 538 GK19673-PA 1..538 1..540 2437 83.7 Plus
Dwil\GK18799-PA 169 GK18799-PA 1..159 247..403 636 76.1 Plus
Dwil\GK24201-PA 521 GK24201-PA 55..514 61..523 501 30.3 Plus
Dwil\GK14395-PA 504 GK14395-PA 25..490 49..515 483 28.3 Plus
Dwil\GK18741-PA 918 GK18741-PA 452..918 61..525 466 27.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22513-PA 540 GE22513-PA 1..540 1..540 2800 98 Plus
Dyak\GE22917-PA 540 GE22917-PA 1..540 1..540 2799 97.8 Plus
Dyak\GE10681-PA 509 GE10681-PA 51..495 68..515 470 28.1 Plus
Dyak\GE12917-PA 913 GE12917-PA 454..913 68..525 453 26.9 Plus
Dyak\GE18837-PA 520 GE18837-PA 11..513 17..523 452 27.4 Plus