BDGP Sequence Production Resources |
Search the DGRC for GH05248
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 52 |
Well: | 48 |
Vector: | pOT2 |
Associated Gene/Transcript | CG4342-RA |
Protein status: | GH05248.pep: validated full length |
Preliminary Size: | 3245 |
Sequenced Size: | 3280 |
Gene | Date | Evidence |
---|---|---|
CG4342 | 2001-01-01 | Release 2 assignment |
CG4342 | 2002-06-22 | Blastp of sequenced clone |
CG4342 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4342 | 2008-04-29 | Release 5.5 accounting |
CG4342 | 2008-08-15 | Release 5.9 accounting |
mun | 2008-12-18 | 5.12 accounting |
3280 bp (3280 high quality bases) assembled on 2002-06-22
GenBank Submission: AY128415
> GH05248.complete GGACGCGGCGGCAGTGTAGATTTCGATGATCCAGTAATTTTCGTCGACCC AAGGGAAACAACAGAATTTGTGGGCATCAGCATCACGGAGCCGGTAACCA CAACAACCACAACAATGGCCACCACGACAACAACACAGCCGCCAAGAAAC TGCGTTGTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGCAG CAGCAAGCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTGCA GCTGCGGCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCATTC GCCCCCTGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCCTA CCAGGCGTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTGCA TGAAACCGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGCTG CTCGGATACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAACCT GGGGGTGCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATACA TCGATAATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGGAG AACATCATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGATAT TGAGCTGCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGACCA TCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGACTG CTGAGCATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGCAC AAGTGCGGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATGCG ACCGGCTGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCTGG ACAACGCTGCGTATGAGTGATGTGGCGACATGACAGCCGCATAGCTGAAG GATTAGAGCCAGGACAATTGCATAACTGTACGTAGTAGATATTTGTAGGG TGGGATAAACAGTGGGAAATGCGCCAGGCAAAATGCGATACACGATACAC GAAACGATAGCGATTACCACAAACTATAAAGATATGGTGCATACTCTTAG GCGCCGCACATGGCATAGCGTATTCATAATGTGTTGTATACATCTAGTGG TTAGTTCTGTGTTTAGCTGCGATTTTCGTGAAGCTTTGTTGTTGATCTTT AACGATGTTGCTGTCTCTTTTGATACGTACATACATATTTGAAGCATTAC GGGATATACATACAAAGAAAACTTGTAGGAAATATGCCTACAACTCATCT AGTTTAATCTATAATTTAATGTGAAAGGAAACTGCTGTCTACATAATAAT ATTGTTAGCCGATAACAGAGGCACACTCGATAGTTGGATTTGATGAGACG TGTACATAGAAGGCATATTCATTAAGTACTATCCGTAGCTAGAGTTTTAT ACGGTAAACAATAATAAGAACTCCTGTCCGTCTGTCCATTCGCCATTATC GCACCCAAACACACACCTTGCATCGCTCTTATTGTTTGCTCTTTGAGCTC TATGAAGTTCTTAGCCGCCTCAATTAAAAAGAATTATTAACCGCCTTAAC AGTGCTTACTTTGTTAAAGGATGTGAGTGCCTCTTCTGGATATGCCAGTT CTCTTTTGATTTTTAATTACAATTTAATGTGGCATGGCATCCGCCTTTCC GCTTTTCCATCTGCCGGGCAGACAAATAATAGTCAGGCGTGCGAATGAAC TCATTTAACGCATTCACATTCACATTCGCATTCGCGGCTGAGCGTGCAAA ACGTTATTGTTAATTTATTTCATAGTTTTCCGTTTCGTTTGGAGGTGCGA AAACAATTACGGTTTCATTATCAATTATGCGTTATGCATTTCGATTGTTG CCACAATTTCACCGGGGCGGCTTTCATCGTGACCTCGCCTCGTTTCAACA GGTTTCATTGCTTACCCCGGAATCCAGAATCCTGAATCCTGAATCCTGAT TACCGTTTCAGTTCGCTGTACATACTCTTACCACTTTGAACTCAATTTAC GTAATTAAATACTAACAGTACATATCAATATGAACACCTAAACGAGTTTT ACACGGAAAGCGAAATTCTTACAATGTCCCTCGATTGCTCGAATCTTTTG TACATAGTTCTTTATACCACTATACTATTCATAATATTTACAACGATATA CAAGAAACAAAAACACTTGGCTAAACCAAACCCTATGAAATATAATATAA ATACTTGATTCGCGTTAAAACAGCAAAGATGAACTGTATATCTAACGAAA CTTCAGTTAAGCCTTAAATAAAGTATGCAAGAGCAAGGAAATAGCTATTG TAAATAGGAATATTATAAACACCTGAGTGAATGGAATATCTTTGAATAAA AGTCGAGTGTTTGACTTAAAGACTCACGCACTACTCACTTTGAGTCTAAG CTTGACCATTTGAAGGAAAACTTGTGGCAGTGTGAAATGTGCGCATATTG AAAATGGTCACAATCATGAAAAAATGTCTTCCTTAATGCATATACTCGGC TATATGTATTATGTTTATACACATTAATATATATATATATATATACATTC TAACGAATACCTATACGATATCTGGCAAACCCCTAGCCTGTGCTTCAGTT AGACAAAAGATAATGTAATATAGACACCAAGGGCTAAACCGTATCACTAT CAAATATCCTTGCAATTATAACACCGTTAACAAAAATTAAATCTAACCGC AACATATCTAAGTCAAATATACCCCTAAATAAATAAATAAATATATATAT ATATACATATAAATAATTATACATATGCGTAAAGTTATAAACGTTAGAGA GCATTGAAAACTACTTTAATAGTCTCTAGAGAAAGCATCGCTTTAACCTA AAAGTATATAGGCAGCATCAGCAGAAAAGTGTAAAGTTTATTGGAAACCT GCTTCTAGCTAAATATTAGACGAATTTAAGGCTATCCAATCCAAATACTA ACTTATCGGAGCAGCTCGTAGGTCGCTAGGAATAGGGAAAATTAGTAGAA TTGTTGGGGCATTGGATTTCAGTTCATTTGCTATCCTATCCGTATCGTTT GATGGCCCACGAATGAAGCAACTAAGTCGTTATAGTTTCGGATTATATCG GTGGCAGGTCGACAGTATTGTTTCATCTCATCTCCTCACTTTTTGGGGTG CGGACAAAGCGTAGCTACAATGTAAAGTACCGTTAAAGTAAACTGATAAA TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16202921..16205493 | 3251..671 | 12460 | 99 | Minus |
chr3R | 27901430 | chr3R | 16207041..16207266 | 436..211 | 1115 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 16209584..16209729 | 146..1 | 730 | 100 | Minus |
chr3R | 27901430 | chr3R | 16206101..16206231 | 561..431 | 655 | 100 | Minus |
chr3R | 27901430 | chr3R | 16205894..16206009 | 673..558 | 565 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 16207737..16207801 | 210..146 | 325 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 20378991..20381576 | 3256..671 | 12930 | 100 | Minus |
3R | 32079331 | 3R | 20383108..20383333 | 436..211 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 20385651..20385796 | 146..1 | 730 | 100 | Minus |
3R | 32079331 | 3R | 20382168..20382298 | 561..431 | 655 | 100 | Minus |
3R | 32079331 | 3R | 20381961..20382076 | 673..558 | 580 | 100 | Minus |
3R | 32079331 | 3R | 20383804..20383868 | 210..146 | 325 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20119822..20122407 | 3256..671 | 12930 | 100 | Minus |
3R | 31820162 | 3R | 20123939..20124164 | 436..211 | 1130 | 100 | Minus |
3R | 31820162 | 3R | 20126482..20126627 | 146..1 | 730 | 100 | Minus |
3R | 31820162 | 3R | 20122999..20123129 | 561..431 | 655 | 100 | Minus |
3R | 31820162 | 3R | 20122792..20122907 | 673..558 | 580 | 100 | Minus |
3R | 31820162 | 3R | 20124635..20124699 | 210..146 | 325 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
transib2 | 2844 | transib2 TRANSIB2 2844bp | 1544..1588 | 1308..1350 | 130 | 80 | Plus |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 544..586 | 92..134 | 125 | 76.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 8248..8294 | 2276..2231 | 124 | 76.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16209585..16209729 | 1..145 | 100 | Minus | |
chr3R | 16202921..16205491 | 673..3251 | 94 | <- | Minus |
chr3R | 16205895..16206005 | 562..672 | 99 | <- | Minus |
chr3R | 16206101..16206228 | 434..561 | 100 | <- | Minus |
chr3R | 16207044..16207266 | 211..433 | 99 | <- | Minus |
chr3R | 16207737..16207801 | 146..210 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mun-RB | 1417..2349 | 1..933 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mun-RC | 1837..2769 | 1..933 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfrl-RL | 2707..3654 | 1..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4342-RA | 1..819 | 115..933 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfrl-RL | 2707..3654 | 1..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mun-RB | 1417..4667 | 1..3251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mun-RC | 1837..5087 | 1..3251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfrl-RH | 3985..7235 | 1..3251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4342-RA | 1..3251 | 1..3251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfrl-RH | 3985..7235 | 1..3251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20381962..20382072 | 562..672 | 100 | <- | Minus |
3R | 20382168..20382295 | 434..561 | 100 | <- | Minus |
3R | 20383111..20383333 | 211..433 | 100 | <- | Minus |
3R | 20383804..20383868 | 146..210 | 100 | <- | Minus |
3R | 20385652..20385796 | 1..145 | 100 | Minus | |
3R | 20378996..20381574 | 673..3251 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20381962..20382072 | 562..672 | 100 | <- | Minus |
3R | 20382168..20382295 | 434..561 | 100 | <- | Minus |
3R | 20383111..20383333 | 211..433 | 100 | <- | Minus |
3R | 20383804..20383868 | 146..210 | 100 | <- | Minus |
3R | 20385652..20385796 | 1..145 | 100 | Minus | |
3R | 20378996..20381574 | 673..3251 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20381962..20382072 | 562..672 | 100 | <- | Minus |
3R | 20382168..20382295 | 434..561 | 100 | <- | Minus |
3R | 20383111..20383333 | 211..433 | 100 | <- | Minus |
3R | 20383804..20383868 | 146..210 | 100 | <- | Minus |
3R | 20385652..20385796 | 1..145 | 100 | Minus | |
3R | 20378996..20381574 | 673..3251 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16204718..16207296 | 673..3251 | 100 | <- | Minus |
arm_3R | 16207684..16207794 | 562..672 | 100 | <- | Minus |
arm_3R | 16207890..16208017 | 434..561 | 100 | <- | Minus |
arm_3R | 16208833..16209055 | 211..433 | 100 | <- | Minus |
arm_3R | 16209526..16209590 | 146..210 | 100 | <- | Minus |
arm_3R | 16211374..16211518 | 1..145 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20119827..20122405 | 673..3251 | 100 | <- | Minus |
3R | 20122793..20122903 | 562..672 | 100 | <- | Minus |
3R | 20122999..20123126 | 434..561 | 100 | <- | Minus |
3R | 20123942..20124164 | 211..433 | 100 | <- | Minus |
3R | 20124635..20124699 | 146..210 | 100 | <- | Minus |
3R | 20126483..20126627 | 1..145 | 100 | Minus |
Translation from 1 to 932
> GH05248.hyp GRGGSVDFDDPVIFVDPRETTEFVGISITEPVTTTTTTMATTTTTQPPRN CVVQRPRQSDQLIREGSSKRIYSLDDVECSELCSCGESLILTCHALCVPF APCRTALAFYSHASPAYQAFRGRCLCYSGRFICMKPPLGEYILPGGIFLL LGYSAADEALLRPHTNLGVQDAVRALQQYVTTYIDNQTQCTLTLFNMTEE NIIIAARLPHDGKLKDIELLRKEKDECTAILKTISHQINSEHSELQSHRL LSIFKMSEVEVVWPESTSAAARSGHGPGQFAGCDRLLYAAMLALAYLSSW TTLRMSDVAT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gfrl-PF | 864 | CG43224-PF | 555..864 | 1..310 | 1623 | 100 | Plus |
Gfrl-PM | 1042 | CG43224-PM | 733..1042 | 1..310 | 1623 | 100 | Plus |
Gfrl-PH | 1101 | CG43224-PH | 792..1101 | 1..310 | 1623 | 100 | Plus |
Gfrl-PI | 1168 | CG43224-PI | 859..1168 | 1..310 | 1623 | 100 | Plus |
Gfrl-PJ | 1212 | CG43224-PJ | 903..1212 | 1..310 | 1623 | 100 | Plus |
Translation from 114 to 932
> GH05248.pep MATTTTTQPPRNCVVQRPRQSDQLIREGSSKRIYSLDDVECSELCSCGES LILTCHALCVPFAPCRTALAFYSHASPAYQAFRGRCLCYSGRFICMKPPL GEYILPGGIFLLLGYSAADEALLRPHTNLGVQDAVRALQQYVTTYIDNQT QCTLTLFNMTEENIIIAARLPHDGKLKDIELLRKEKDECTAILKTISHQI NSEHSELQSHRLLSIFKMSEVEVVWPESTSAAARSGHGPGQFAGCDRLLY AAMLALAYLSSWTTLRMSDVAT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23212-PA | 276 | GF23212-PA | 1..276 | 1..272 | 1378 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15512-PA | 272 | GG15512-PA | 1..272 | 1..272 | 1432 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14175-PA | 274 | GH14175-PA | 1..235 | 1..236 | 1203 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gfrl-PJ | 1212 | CG43224-PJ | 941..1212 | 1..272 | 1426 | 100 | Plus |
Gfrl-PI | 1168 | CG43224-PI | 897..1168 | 1..272 | 1426 | 100 | Plus |
Gfrl-PH | 1101 | CG43224-PH | 830..1101 | 1..272 | 1426 | 100 | Plus |
Gfrl-PG | 1212 | CG43224-PG | 941..1212 | 1..272 | 1426 | 100 | Plus |
Gfrl-PF | 864 | CG43224-PF | 593..864 | 1..272 | 1426 | 100 | Plus |
Gfrl-PE | 1279 | CG43224-PE | 1008..1279 | 1..272 | 1426 | 100 | Plus |
Gfrl-PN | 1212 | CG43224-PN | 941..1212 | 1..272 | 1426 | 100 | Plus |
Gfrl-PL | 1217 | CG43224-PL | 941..1212 | 1..272 | 1426 | 100 | Plus |
Gfrl-PM | 1042 | CG43224-PM | 771..1042 | 1..272 | 1426 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10547-PA | 265 | GI10547-PA | 1..235 | 1..236 | 1193 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24096-PA | 277 | GL24096-PA | 1..268 | 1..271 | 1260 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30155-PA | 1338 | GA30155-PA | 1069..1328 | 8..270 | 1221 | 90.5 | Plus |
Dpse\GA30155-PB | 1183 | GA30155-PB | 1022..1173 | 116..270 | 639 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23197-PA | 386 | GM23197-PA | 115..386 | 1..272 | 1455 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20071-PA | 386 | GD20071-PA | 115..386 | 1..272 | 1457 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24201-PA | 271 | GJ24201-PA | 1..235 | 1..236 | 1202 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22736-PA | 266 | GK22736-PA | 1..227 | 1..227 | 1162 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25079-PA | 464 | GE25079-PA | 193..464 | 1..272 | 1450 | 98.9 | Plus |