Clone GH05248 Report

Search the DGRC for GH05248

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:48
Vector:pOT2
Associated Gene/TranscriptCG4342-RA
Protein status:GH05248.pep: validated full length
Preliminary Size:3245
Sequenced Size:3280

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4342 2001-01-01 Release 2 assignment
CG4342 2002-06-22 Blastp of sequenced clone
CG4342 2003-01-01 Sim4 clustering to Release 3
CG4342 2008-04-29 Release 5.5 accounting
CG4342 2008-08-15 Release 5.9 accounting
mun 2008-12-18 5.12 accounting

Clone Sequence Records

GH05248.complete Sequence

3280 bp (3280 high quality bases) assembled on 2002-06-22

GenBank Submission: AY128415

> GH05248.complete
GGACGCGGCGGCAGTGTAGATTTCGATGATCCAGTAATTTTCGTCGACCC
AAGGGAAACAACAGAATTTGTGGGCATCAGCATCACGGAGCCGGTAACCA
CAACAACCACAACAATGGCCACCACGACAACAACACAGCCGCCAAGAAAC
TGCGTTGTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGCAG
CAGCAAGCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTGCA
GCTGCGGCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCATTC
GCCCCCTGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCCTA
CCAGGCGTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTGCA
TGAAACCGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGCTG
CTCGGATACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAACCT
GGGGGTGCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATACA
TCGATAATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGGAG
AACATCATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGATAT
TGAGCTGCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGACCA
TCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGACTG
CTGAGCATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGCAC
AAGTGCGGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATGCG
ACCGGCTGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCTGG
ACAACGCTGCGTATGAGTGATGTGGCGACATGACAGCCGCATAGCTGAAG
GATTAGAGCCAGGACAATTGCATAACTGTACGTAGTAGATATTTGTAGGG
TGGGATAAACAGTGGGAAATGCGCCAGGCAAAATGCGATACACGATACAC
GAAACGATAGCGATTACCACAAACTATAAAGATATGGTGCATACTCTTAG
GCGCCGCACATGGCATAGCGTATTCATAATGTGTTGTATACATCTAGTGG
TTAGTTCTGTGTTTAGCTGCGATTTTCGTGAAGCTTTGTTGTTGATCTTT
AACGATGTTGCTGTCTCTTTTGATACGTACATACATATTTGAAGCATTAC
GGGATATACATACAAAGAAAACTTGTAGGAAATATGCCTACAACTCATCT
AGTTTAATCTATAATTTAATGTGAAAGGAAACTGCTGTCTACATAATAAT
ATTGTTAGCCGATAACAGAGGCACACTCGATAGTTGGATTTGATGAGACG
TGTACATAGAAGGCATATTCATTAAGTACTATCCGTAGCTAGAGTTTTAT
ACGGTAAACAATAATAAGAACTCCTGTCCGTCTGTCCATTCGCCATTATC
GCACCCAAACACACACCTTGCATCGCTCTTATTGTTTGCTCTTTGAGCTC
TATGAAGTTCTTAGCCGCCTCAATTAAAAAGAATTATTAACCGCCTTAAC
AGTGCTTACTTTGTTAAAGGATGTGAGTGCCTCTTCTGGATATGCCAGTT
CTCTTTTGATTTTTAATTACAATTTAATGTGGCATGGCATCCGCCTTTCC
GCTTTTCCATCTGCCGGGCAGACAAATAATAGTCAGGCGTGCGAATGAAC
TCATTTAACGCATTCACATTCACATTCGCATTCGCGGCTGAGCGTGCAAA
ACGTTATTGTTAATTTATTTCATAGTTTTCCGTTTCGTTTGGAGGTGCGA
AAACAATTACGGTTTCATTATCAATTATGCGTTATGCATTTCGATTGTTG
CCACAATTTCACCGGGGCGGCTTTCATCGTGACCTCGCCTCGTTTCAACA
GGTTTCATTGCTTACCCCGGAATCCAGAATCCTGAATCCTGAATCCTGAT
TACCGTTTCAGTTCGCTGTACATACTCTTACCACTTTGAACTCAATTTAC
GTAATTAAATACTAACAGTACATATCAATATGAACACCTAAACGAGTTTT
ACACGGAAAGCGAAATTCTTACAATGTCCCTCGATTGCTCGAATCTTTTG
TACATAGTTCTTTATACCACTATACTATTCATAATATTTACAACGATATA
CAAGAAACAAAAACACTTGGCTAAACCAAACCCTATGAAATATAATATAA
ATACTTGATTCGCGTTAAAACAGCAAAGATGAACTGTATATCTAACGAAA
CTTCAGTTAAGCCTTAAATAAAGTATGCAAGAGCAAGGAAATAGCTATTG
TAAATAGGAATATTATAAACACCTGAGTGAATGGAATATCTTTGAATAAA
AGTCGAGTGTTTGACTTAAAGACTCACGCACTACTCACTTTGAGTCTAAG
CTTGACCATTTGAAGGAAAACTTGTGGCAGTGTGAAATGTGCGCATATTG
AAAATGGTCACAATCATGAAAAAATGTCTTCCTTAATGCATATACTCGGC
TATATGTATTATGTTTATACACATTAATATATATATATATATATACATTC
TAACGAATACCTATACGATATCTGGCAAACCCCTAGCCTGTGCTTCAGTT
AGACAAAAGATAATGTAATATAGACACCAAGGGCTAAACCGTATCACTAT
CAAATATCCTTGCAATTATAACACCGTTAACAAAAATTAAATCTAACCGC
AACATATCTAAGTCAAATATACCCCTAAATAAATAAATAAATATATATAT
ATATACATATAAATAATTATACATATGCGTAAAGTTATAAACGTTAGAGA
GCATTGAAAACTACTTTAATAGTCTCTAGAGAAAGCATCGCTTTAACCTA
AAAGTATATAGGCAGCATCAGCAGAAAAGTGTAAAGTTTATTGGAAACCT
GCTTCTAGCTAAATATTAGACGAATTTAAGGCTATCCAATCCAAATACTA
ACTTATCGGAGCAGCTCGTAGGTCGCTAGGAATAGGGAAAATTAGTAGAA
TTGTTGGGGCATTGGATTTCAGTTCATTTGCTATCCTATCCGTATCGTTT
GATGGCCCACGAATGAAGCAACTAAGTCGTTATAGTTTCGGATTATATCG
GTGGCAGGTCGACAGTATTGTTTCATCTCATCTCCTCACTTTTTGGGGTG
CGGACAAAGCGTAGCTACAATGTAAAGTACCGTTAAAGTAAACTGATAAA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH05248.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
mun-RC 5129 mun-RC 1879..5129 1..3251 16255 100 Plus
mun.a 4626 mun.a 1376..4626 1..3251 16255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16202921..16205493 3251..671 12460 99 Minus
chr3R 27901430 chr3R 16207041..16207266 436..211 1115 99.6 Minus
chr3R 27901430 chr3R 16209584..16209729 146..1 730 100 Minus
chr3R 27901430 chr3R 16206101..16206231 561..431 655 100 Minus
chr3R 27901430 chr3R 16205894..16206009 673..558 565 99.1 Minus
chr3R 27901430 chr3R 16207737..16207801 210..146 325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20378991..20381576 3256..671 12930 100 Minus
3R 32079331 3R 20383108..20383333 436..211 1130 100 Minus
3R 32079331 3R 20385651..20385796 146..1 730 100 Minus
3R 32079331 3R 20382168..20382298 561..431 655 100 Minus
3R 32079331 3R 20381961..20382076 673..558 580 100 Minus
3R 32079331 3R 20383804..20383868 210..146 325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20119822..20122407 3256..671 12930 100 Minus
3R 31820162 3R 20123939..20124164 436..211 1130 100 Minus
3R 31820162 3R 20126482..20126627 146..1 730 100 Minus
3R 31820162 3R 20122999..20123129 561..431 655 100 Minus
3R 31820162 3R 20122792..20122907 673..558 580 100 Minus
3R 31820162 3R 20124635..20124699 210..146 325 100 Minus
Blast to na_te.dros performed 2019-03-15 12:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 1544..1588 1308..1350 130 80 Plus
Doc2-element 4789 Doc2-element DOC2 4789bp 544..586 92..134 125 76.7 Plus
roo 9092 roo DM_ROO 9092bp 8248..8294 2276..2231 124 76.6 Minus

GH05248.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:04:17 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16209585..16209729 1..145 100   Minus
chr3R 16202921..16205491 673..3251 94 <- Minus
chr3R 16205895..16206005 562..672 99 <- Minus
chr3R 16206101..16206228 434..561 100 <- Minus
chr3R 16207044..16207266 211..433 99 <- Minus
chr3R 16207737..16207801 146..210 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:17:48 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
mun-RB 1417..2349 1..933 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:19:42 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
mun-RC 1837..2769 1..933 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:36:53 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RL 2707..3654 1..948 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:45 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
CG4342-RA 1..819 115..933 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:50:47 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RL 2707..3654 1..948 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:45:11 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
mun-RB 1417..4667 1..3251 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:19:42 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
mun-RC 1837..5087 1..3251 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:36:53 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RH 3985..7235 1..3251 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:45 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
CG4342-RA 1..3251 1..3251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:47 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RH 3985..7235 1..3251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:04:17 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20381962..20382072 562..672 100 <- Minus
3R 20382168..20382295 434..561 100 <- Minus
3R 20383111..20383333 211..433 100 <- Minus
3R 20383804..20383868 146..210 100 <- Minus
3R 20385652..20385796 1..145 100   Minus
3R 20378996..20381574 673..3251 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:04:17 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20381962..20382072 562..672 100 <- Minus
3R 20382168..20382295 434..561 100 <- Minus
3R 20383111..20383333 211..433 100 <- Minus
3R 20383804..20383868 146..210 100 <- Minus
3R 20385652..20385796 1..145 100   Minus
3R 20378996..20381574 673..3251 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:04:17 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20381962..20382072 562..672 100 <- Minus
3R 20382168..20382295 434..561 100 <- Minus
3R 20383111..20383333 211..433 100 <- Minus
3R 20383804..20383868 146..210 100 <- Minus
3R 20385652..20385796 1..145 100   Minus
3R 20378996..20381574 673..3251 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:36:53 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16204718..16207296 673..3251 100 <- Minus
arm_3R 16207684..16207794 562..672 100 <- Minus
arm_3R 16207890..16208017 434..561 100 <- Minus
arm_3R 16208833..16209055 211..433 100 <- Minus
arm_3R 16209526..16209590 146..210 100 <- Minus
arm_3R 16211374..16211518 1..145 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:06 Download gff for GH05248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20119827..20122405 673..3251 100 <- Minus
3R 20122793..20122903 562..672 100 <- Minus
3R 20122999..20123126 434..561 100 <- Minus
3R 20123942..20124164 211..433 100 <- Minus
3R 20124635..20124699 146..210 100 <- Minus
3R 20126483..20126627 1..145 100   Minus

GH05248.hyp Sequence

Translation from 1 to 932

> GH05248.hyp
GRGGSVDFDDPVIFVDPRETTEFVGISITEPVTTTTTTMATTTTTQPPRN
CVVQRPRQSDQLIREGSSKRIYSLDDVECSELCSCGESLILTCHALCVPF
APCRTALAFYSHASPAYQAFRGRCLCYSGRFICMKPPLGEYILPGGIFLL
LGYSAADEALLRPHTNLGVQDAVRALQQYVTTYIDNQTQCTLTLFNMTEE
NIIIAARLPHDGKLKDIELLRKEKDECTAILKTISHQINSEHSELQSHRL
LSIFKMSEVEVVWPESTSAAARSGHGPGQFAGCDRLLYAAMLALAYLSSW
TTLRMSDVAT*

GH05248.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-PF 864 CG43224-PF 555..864 1..310 1623 100 Plus
Gfrl-PM 1042 CG43224-PM 733..1042 1..310 1623 100 Plus
Gfrl-PH 1101 CG43224-PH 792..1101 1..310 1623 100 Plus
Gfrl-PI 1168 CG43224-PI 859..1168 1..310 1623 100 Plus
Gfrl-PJ 1212 CG43224-PJ 903..1212 1..310 1623 100 Plus

GH05248.pep Sequence

Translation from 114 to 932

> GH05248.pep
MATTTTTQPPRNCVVQRPRQSDQLIREGSSKRIYSLDDVECSELCSCGES
LILTCHALCVPFAPCRTALAFYSHASPAYQAFRGRCLCYSGRFICMKPPL
GEYILPGGIFLLLGYSAADEALLRPHTNLGVQDAVRALQQYVTTYIDNQT
QCTLTLFNMTEENIIIAARLPHDGKLKDIELLRKEKDECTAILKTISHQI
NSEHSELQSHRLLSIFKMSEVEVVWPESTSAAARSGHGPGQFAGCDRLLY
AAMLALAYLSSWTTLRMSDVAT*

GH05248.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23212-PA 276 GF23212-PA 1..276 1..272 1378 93.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15512-PA 272 GG15512-PA 1..272 1..272 1432 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14175-PA 274 GH14175-PA 1..235 1..236 1203 94.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-PJ 1212 CG43224-PJ 941..1212 1..272 1426 100 Plus
Gfrl-PI 1168 CG43224-PI 897..1168 1..272 1426 100 Plus
Gfrl-PH 1101 CG43224-PH 830..1101 1..272 1426 100 Plus
Gfrl-PG 1212 CG43224-PG 941..1212 1..272 1426 100 Plus
Gfrl-PF 864 CG43224-PF 593..864 1..272 1426 100 Plus
Gfrl-PE 1279 CG43224-PE 1008..1279 1..272 1426 100 Plus
Gfrl-PN 1212 CG43224-PN 941..1212 1..272 1426 100 Plus
Gfrl-PL 1217 CG43224-PL 941..1212 1..272 1426 100 Plus
Gfrl-PM 1042 CG43224-PM 771..1042 1..272 1426 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10547-PA 265 GI10547-PA 1..235 1..236 1193 93.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24096-PA 277 GL24096-PA 1..268 1..271 1260 90 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30155-PA 1338 GA30155-PA 1069..1328 8..270 1221 90.5 Plus
Dpse\GA30155-PB 1183 GA30155-PB 1022..1173 116..270 639 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23197-PA 386 GM23197-PA 115..386 1..272 1455 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20071-PA 386 GD20071-PA 115..386 1..272 1457 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24201-PA 271 GJ24201-PA 1..235 1..236 1202 94.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22736-PA 266 GK22736-PA 1..227 1..227 1162 93.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25079-PA 464 GE25079-PA 193..464 1..272 1450 98.9 Plus