Clone GH05294 Report

Search the DGRC for GH05294

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:94
Vector:pOT2
Associated Gene/TranscriptrdhB-RA
Protein status:GH05294.pep: gold
Preliminary Size:1126
Sequenced Size:979

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7077 2001-01-01 Release 2 assignment
CG7077 2002-05-17 Blastp of sequenced clone
CG7077 2003-01-01 Sim4 clustering to Release 3
CG7077 2008-04-29 Release 5.5 accounting
CG7077 2008-08-15 Release 5.9 accounting
CG7077 2008-12-18 5.12 accounting

Clone Sequence Records

GH05294.complete Sequence

979 bp (979 high quality bases) assembled on 2002-05-17

GenBank Submission: AY119471

> GH05294.complete
GCAATCGAAGCCATAAGGTTATCTTTGCTTAAACAACATCTTGTCTCTTC
AGATTTAACACATCTCTGATCATGGAAAATAATTTCTACTGGCGCAACAA
GGTGGCGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTA
TAGAACTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTG
GAACTCATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTT
TGCCCGGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTA
ACTGGATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCT
GGCATCCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAA
GGAACTGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGG
CACTGAAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATG
AACAGCGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAG
CGTTTATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGC
GCCAGGAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGC
CCGGGCATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGC
CGAGCTGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATG
CGCTGAACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAG
ATGCGGAAGGTCGATTGAATTTTAGTTTGAATTTCAAGAGAATTACATTT
TACCCAAAACGATATTATTTGTACATTTTGTATATGTTCTTCTATGTAAT
AAGAGAACAAATGTACATATTTTTAAATATAAAAAATTACATTATTGCAT
TTCAAGCAAAAAAAAAAAAAAAAAAAAAA

GH05294.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7077-RA 1031 CG7077-RA 65..1023 1..959 4795 100 Plus
CG7077.a 974 CG7077.a 69..974 52..957 4530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18179535..18179851 641..957 1585 100 Plus
chr3R 27901430 chr3R 18175846..18176058 1..213 1065 100 Plus
chr3R 27901430 chr3R 18176116..18176283 211..378 840 100 Plus
chr3R 27901430 chr3R 18179274..18179414 501..641 705 100 Plus
chr3R 27901430 chr3R 18176335..18176462 378..505 625 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22355948..22356266 641..959 1595 100 Plus
3R 32079331 3R 22352259..22352471 1..213 1065 100 Plus
3R 32079331 3R 22352529..22352696 211..378 840 100 Plus
3R 32079331 3R 22355687..22355827 501..641 705 100 Plus
3R 32079331 3R 22352748..22352875 378..505 640 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22096779..22097097 641..959 1595 100 Plus
3R 31820162 3R 22093090..22093302 1..213 1065 100 Plus
3R 31820162 3R 22093360..22093527 211..378 840 100 Plus
3R 31820162 3R 22096518..22096658 501..641 705 100 Plus
3R 31820162 3R 22093579..22093706 378..505 640 100 Plus
Blast to na_te.dros performed 2019-03-16 23:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 2183..2236 890..944 110 71.4 Plus

GH05294.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:38:53 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18176118..18176283 213..378 100 -> Plus
chr3R 18176336..18176462 379..505 99 -> Plus
chr3R 18179279..18179414 506..641 100 -> Plus
chr3R 18175846..18176057 1..212 100 -> Plus
chr3R 18179536..18179851 642..957 92   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:17:58 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 1..747 72..818 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:53:00 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 1..747 72..818 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:33 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 1..747 72..818 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:35:27 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 1..747 72..818 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:06 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 1..747 72..818 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:05:02 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 17..973 1..957 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:53:00 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 17..973 1..957 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:33 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 15..971 1..957 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:35:27 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 17..973 1..957 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:06 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 15..971 1..957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:53 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22352259..22352470 1..212 100 -> Plus
3R 22352531..22352696 213..378 100 -> Plus
3R 22352749..22352875 379..505 100 -> Plus
3R 22355692..22355827 506..641 100 -> Plus
3R 22355949..22356264 642..957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:53 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22352259..22352470 1..212 100 -> Plus
3R 22352531..22352696 213..378 100 -> Plus
3R 22352749..22352875 379..505 100 -> Plus
3R 22355692..22355827 506..641 100 -> Plus
3R 22355949..22356264 642..957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:53 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22352259..22352470 1..212 100 -> Plus
3R 22352531..22352696 213..378 100 -> Plus
3R 22352749..22352875 379..505 100 -> Plus
3R 22355692..22355827 506..641 100 -> Plus
3R 22355949..22356264 642..957 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:33 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18178253..18178418 213..378 100 -> Plus
arm_3R 18178471..18178597 379..505 100 -> Plus
arm_3R 18181414..18181549 506..641 100 -> Plus
arm_3R 18177981..18178192 1..212 100 -> Plus
arm_3R 18181671..18181986 642..957 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:17:44 Download gff for GH05294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22093090..22093301 1..212 100 -> Plus
3R 22093362..22093527 213..378 100 -> Plus
3R 22093580..22093706 379..505 100 -> Plus
3R 22096523..22096658 506..641 100 -> Plus
3R 22096780..22097095 642..957 100   Plus

GH05294.hyp Sequence

Translation from 71 to 817

> GH05294.hyp
MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR
DQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANF
LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHR
IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTD
FLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQMRKVD*

GH05294.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-PB 248 CG7077-PB 1..248 1..248 1249 100 Plus
rdhB-PA 248 CG7077-PA 1..248 1..248 1249 100 Plus
antdh-PA 250 CG1386-PA 4..246 7..244 469 40.7 Plus
CG9150-PB 251 CG9150-PB 4..247 7..244 455 40.6 Plus
CG8757-PB 252 CG8757-PB 4..246 7..242 439 39.1 Plus

GH05294.pep Sequence

Translation from 71 to 817

> GH05294.pep
MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR
DQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANF
LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHR
IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTD
FLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQMRKVD*

GH05294.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18078-PA 247 GF18078-PA 3..247 4..248 1179 90.6 Plus
Dana\GF10960-PA 252 GF10960-PA 4..246 7..242 491 42.4 Plus
Dana\GF20253-PA 252 GF20253-PA 4..248 7..244 480 42 Plus
Dana\GF22156-PA 248 GF22156-PA 4..244 7..244 471 41.2 Plus
Dana\GF15405-PA 251 GF15405-PA 4..247 7..244 468 40.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11119-PA 248 GG11119-PA 1..248 1..248 1284 97.6 Plus
Dere\GG10137-PA 251 GG10137-PA 4..250 7..247 476 40.9 Plus
Dere\GG13756-PA 252 GG13756-PA 4..246 7..242 470 40.3 Plus
Dere\GG18873-PA 250 GG18873-PA 4..244 7..242 462 38.6 Plus
Dere\GG17505-PA 247 GG17505-PA 4..243 7..244 448 40.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21119-PA 247 GH21119-PA 4..247 5..248 1122 86.5 Plus
Dgri\GH17647-PA 254 GH17647-PA 4..248 7..242 479 39.6 Plus
Dgri\GH18894-PA 249 GH18894-PA 4..248 7..247 471 40 Plus
Dgri\GH12862-PA 247 GH12862-PA 4..243 7..244 467 41 Plus
Dgri\GH12228-PA 247 GH12228-PA 4..241 7..242 463 39.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-PB 248 CG7077-PB 1..248 1..248 1249 100 Plus
rdhB-PA 248 CG7077-PA 1..248 1..248 1249 100 Plus
antdh-PA 250 CG1386-PA 4..246 7..244 469 40.7 Plus
CG9150-PB 251 CG9150-PB 4..247 7..244 455 40.6 Plus
CG8757-PB 252 CG8757-PB 4..246 7..242 439 39.1 Plus
CG40486-PC 247 CG40486-PC 4..243 7..244 438 36.6 Plus
CG40486-PB 247 CG40486-PB 4..243 7..244 438 36.6 Plus
CG9360-PA 251 CG9360-PA 4..245 7..242 431 38 Plus
CG40485-PC 247 CG40485-PC 4..243 7..244 423 38.9 Plus
CG40485-PB 247 CG40485-PB 4..243 7..244 423 38.9 Plus
CG3301-PC 250 CG3301-PC 4..244 7..242 414 37.8 Plus
CG3301-PB 250 CG3301-PB 4..244 7..242 414 37.8 Plus
CG3301-PA 250 CG3301-PA 4..244 7..242 414 37.8 Plus
CG10962-PB 249 CG10962-PB 4..243 7..242 400 41.1 Plus
CG40485-PA 231 CG40485-PA 4..192 7..190 314 37.9 Plus
CG31937-PA 321 CG31937-PA 45..239 8..202 203 30 Plus
firl-PE 318 CG14946-PE 56..244 10..199 183 27.2 Plus
firl-PC 318 CG14946-PC 56..244 10..199 183 27.2 Plus
firl-PD 318 CG14946-PD 56..244 10..199 183 27.2 Plus
CG31549-PB 257 CG31549-PB 4..191 7..200 179 28.1 Plus
CG31549-PA 257 CG31549-PA 4..191 7..200 179 28.1 Plus
CG9265-PD 399 CG9265-PD 88..309 11..236 172 27.7 Plus
CG9265-PC 399 CG9265-PC 88..309 11..236 172 27.7 Plus
CG9265-PB 399 CG9265-PB 88..309 11..236 172 27.7 Plus
CG9265-PA 399 CG9265-PA 88..309 11..236 172 27.7 Plus
Ldsdh1-PA 320 CG2254-PA 59..268 10..221 161 26.8 Plus
Fbp2-PC 256 CG3763-PC 2..191 5..202 150 22.3 Plus
Fbp2-PB 256 CG3763-PB 2..191 5..202 150 22.3 Plus
Fbp2-PA 256 CG3763-PA 2..191 5..202 150 22.3 Plus
CG10425-PA 336 CG10425-PA 39..220 13..193 149 28.6 Plus
CG3699-PA 251 CG3699-PA 5..185 9..200 147 28.9 Plus
Pdh-PD 260 CG4899-PD 3..230 7..246 146 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10473-PA 247 GI10473-PA 3..247 4..248 1153 88.2 Plus
Dmoj\GI14955-PA 247 GI14955-PA 4..243 7..244 502 42.8 Plus
Dmoj\GI16085-PA 260 GI16085-PA 4..254 7..242 472 39 Plus
Dmoj\GI14956-PA 247 GI14956-PA 4..241 7..242 470 41.1 Plus
Dmoj\GI13477-PA 251 GI13477-PA 4..247 7..244 456 41 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24329-PA 247 GL24329-PA 1..247 1..248 1126 86.7 Plus
Dper\GL20303-PA 249 GL20303-PA 4..245 7..244 489 42.4 Plus
Dper\GL19078-PA 251 GL19078-PA 4..247 7..244 471 40.2 Plus
Dper\GL24037-PA 250 GL24037-PA 4..244 7..242 456 40.2 Plus
Dper\GL24036-PA 249 GL24036-PA 4..243 7..242 454 40.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20084-PA 247 GA20084-PA 1..247 1..248 1133 87.1 Plus
Dpse\GA22691-PA 279 GA22691-PA 31..273 7..242 487 42 Plus
Dpse\GA12578-PA 249 GA12578-PA 4..245 7..244 484 42.4 Plus
Dpse\GA21577-PA 251 GA21577-PA 4..247 7..244 469 40.2 Plus
Dpse\GA23088-PA 247 GA23088-PA 4..243 7..244 452 38.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26414-PA 248 GM26414-PA 1..248 1..248 1289 98 Plus
Dsec\GM11256-PA 250 GM11256-PA 4..246 7..244 487 41.2 Plus
Dsec\GM17962-PA 251 GM17962-PA 4..247 7..244 470 41 Plus
Dsec\GM24579-PA 252 GM24579-PA 4..246 7..242 460 39.9 Plus
Dsec\GM13047-PA 251 GM13047-PA 4..247 7..244 446 38.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20935-PA 248 GD20935-PA 1..248 1..248 1297 98.8 Plus
Dsim\GD15999-PA 250 GD15999-PA 4..246 7..244 486 41.2 Plus
Dsim\GD22600-PA 251 GD22600-PA 4..247 7..244 471 41 Plus
Dsim\GD19832-PA 250 GD19832-PA 4..244 7..242 455 39.8 Plus
Dsim\GD15972-PA 251 GD15972-PA 4..247 7..244 445 38.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23155-PA 247 GJ23155-PA 2..247 3..248 1152 87 Plus
Dvir\GJ14440-PA 250 GJ14440-PA 4..244 7..242 479 40.7 Plus
Dvir\GJ18923-PA 247 GJ18923-PA 4..243 7..244 465 41.4 Plus
Dvir\GJ18924-PA 247 GJ18924-PA 4..241 7..242 461 39.8 Plus
Dvir\GJ18619-PA 250 GJ18619-PA 4..244 7..242 460 39.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14250-PA 247 GK14250-PA 3..245 4..246 1152 89.3 Plus
Dwil\GK15026-PA 253 GK15026-PA 4..247 7..242 485 40.2 Plus
Dwil\GK16284-PA 278 GK16284-PA 4..249 7..247 459 39.4 Plus
Dwil\GK14224-PA 250 GK14224-PA 4..244 7..242 456 40.7 Plus
Dwil\GK15390-PA 251 GK15390-PA 4..247 7..244 454 40.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10285-PA 248 GE10285-PA 1..248 1..248 1277 96.8 Plus
Dyak\GE17313-PA 250 GE17313-PA 4..246 7..244 487 40.7 Plus
Dyak\GE18948-PA 251 GE18948-PA 4..250 7..247 475 40.5 Plus
Dyak\GE20052-PA 266 GE20052-PA 18..260 7..242 463 39.5 Plus
Dyak\GE15260-PA 247 GE15260-PA 4..243 7..244 453 38.7 Plus