BDGP Sequence Production Resources |
Search the DGRC for GH05294
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 52 |
Well: | 94 |
Vector: | pOT2 |
Associated Gene/Transcript | rdhB-RA |
Protein status: | GH05294.pep: gold |
Preliminary Size: | 1126 |
Sequenced Size: | 979 |
Gene | Date | Evidence |
---|---|---|
CG7077 | 2001-01-01 | Release 2 assignment |
CG7077 | 2002-05-17 | Blastp of sequenced clone |
CG7077 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7077 | 2008-04-29 | Release 5.5 accounting |
CG7077 | 2008-08-15 | Release 5.9 accounting |
CG7077 | 2008-12-18 | 5.12 accounting |
979 bp (979 high quality bases) assembled on 2002-05-17
GenBank Submission: AY119471
> GH05294.complete GCAATCGAAGCCATAAGGTTATCTTTGCTTAAACAACATCTTGTCTCTTC AGATTTAACACATCTCTGATCATGGAAAATAATTTCTACTGGCGCAACAA GGTGGCGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTA TAGAACTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTG GAACTCATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTT TGCCCGGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTA ACTGGATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCT GGCATCCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAA GGAACTGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGG CACTGAAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATG AACAGCGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAG CGTTTATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGC GCCAGGAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGC CCGGGCATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGC CGAGCTGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATG CGCTGAACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAG ATGCGGAAGGTCGATTGAATTTTAGTTTGAATTTCAAGAGAATTACATTT TACCCAAAACGATATTATTTGTACATTTTGTATATGTTCTTCTATGTAAT AAGAGAACAAATGTACATATTTTTAAATATAAAAAATTACATTATTGCAT TTCAAGCAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18179535..18179851 | 641..957 | 1585 | 100 | Plus |
chr3R | 27901430 | chr3R | 18175846..18176058 | 1..213 | 1065 | 100 | Plus |
chr3R | 27901430 | chr3R | 18176116..18176283 | 211..378 | 840 | 100 | Plus |
chr3R | 27901430 | chr3R | 18179274..18179414 | 501..641 | 705 | 100 | Plus |
chr3R | 27901430 | chr3R | 18176335..18176462 | 378..505 | 625 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22355948..22356266 | 641..959 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 22352259..22352471 | 1..213 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 22352529..22352696 | 211..378 | 840 | 100 | Plus |
3R | 32079331 | 3R | 22355687..22355827 | 501..641 | 705 | 100 | Plus |
3R | 32079331 | 3R | 22352748..22352875 | 378..505 | 640 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22096779..22097097 | 641..959 | 1595 | 100 | Plus |
3R | 31820162 | 3R | 22093090..22093302 | 1..213 | 1065 | 100 | Plus |
3R | 31820162 | 3R | 22093360..22093527 | 211..378 | 840 | 100 | Plus |
3R | 31820162 | 3R | 22096518..22096658 | 501..641 | 705 | 100 | Plus |
3R | 31820162 | 3R | 22093579..22093706 | 378..505 | 640 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 2183..2236 | 890..944 | 110 | 71.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18176118..18176283 | 213..378 | 100 | -> | Plus |
chr3R | 18176336..18176462 | 379..505 | 99 | -> | Plus |
chr3R | 18179279..18179414 | 506..641 | 100 | -> | Plus |
chr3R | 18175846..18176057 | 1..212 | 100 | -> | Plus |
chr3R | 18179536..18179851 | 642..957 | 92 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7077-RA | 1..747 | 72..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7077-RA | 1..747 | 72..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rdhB-RA | 1..747 | 72..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7077-RA | 1..747 | 72..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rdhB-RA | 1..747 | 72..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7077-RA | 17..973 | 1..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7077-RA | 17..973 | 1..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rdhB-RA | 15..971 | 1..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7077-RA | 17..973 | 1..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rdhB-RA | 15..971 | 1..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22352259..22352470 | 1..212 | 100 | -> | Plus |
3R | 22352531..22352696 | 213..378 | 100 | -> | Plus |
3R | 22352749..22352875 | 379..505 | 100 | -> | Plus |
3R | 22355692..22355827 | 506..641 | 100 | -> | Plus |
3R | 22355949..22356264 | 642..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22352259..22352470 | 1..212 | 100 | -> | Plus |
3R | 22352531..22352696 | 213..378 | 100 | -> | Plus |
3R | 22352749..22352875 | 379..505 | 100 | -> | Plus |
3R | 22355692..22355827 | 506..641 | 100 | -> | Plus |
3R | 22355949..22356264 | 642..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22352259..22352470 | 1..212 | 100 | -> | Plus |
3R | 22352531..22352696 | 213..378 | 100 | -> | Plus |
3R | 22352749..22352875 | 379..505 | 100 | -> | Plus |
3R | 22355692..22355827 | 506..641 | 100 | -> | Plus |
3R | 22355949..22356264 | 642..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18178253..18178418 | 213..378 | 100 | -> | Plus |
arm_3R | 18178471..18178597 | 379..505 | 100 | -> | Plus |
arm_3R | 18181414..18181549 | 506..641 | 100 | -> | Plus |
arm_3R | 18177981..18178192 | 1..212 | 100 | -> | Plus |
arm_3R | 18181671..18181986 | 642..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22093090..22093301 | 1..212 | 100 | -> | Plus |
3R | 22093362..22093527 | 213..378 | 100 | -> | Plus |
3R | 22093580..22093706 | 379..505 | 100 | -> | Plus |
3R | 22096523..22096658 | 506..641 | 100 | -> | Plus |
3R | 22096780..22097095 | 642..957 | 100 | Plus |
Translation from 71 to 817
> GH05294.hyp MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR DQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANF LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHR IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTD FLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQMRKVD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rdhB-PB | 248 | CG7077-PB | 1..248 | 1..248 | 1249 | 100 | Plus |
rdhB-PA | 248 | CG7077-PA | 1..248 | 1..248 | 1249 | 100 | Plus |
antdh-PA | 250 | CG1386-PA | 4..246 | 7..244 | 469 | 40.7 | Plus |
CG9150-PB | 251 | CG9150-PB | 4..247 | 7..244 | 455 | 40.6 | Plus |
CG8757-PB | 252 | CG8757-PB | 4..246 | 7..242 | 439 | 39.1 | Plus |
Translation from 71 to 817
> GH05294.pep MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR DQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANF LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHR IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTD FLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQMRKVD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18078-PA | 247 | GF18078-PA | 3..247 | 4..248 | 1179 | 90.6 | Plus |
Dana\GF10960-PA | 252 | GF10960-PA | 4..246 | 7..242 | 491 | 42.4 | Plus |
Dana\GF20253-PA | 252 | GF20253-PA | 4..248 | 7..244 | 480 | 42 | Plus |
Dana\GF22156-PA | 248 | GF22156-PA | 4..244 | 7..244 | 471 | 41.2 | Plus |
Dana\GF15405-PA | 251 | GF15405-PA | 4..247 | 7..244 | 468 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11119-PA | 248 | GG11119-PA | 1..248 | 1..248 | 1284 | 97.6 | Plus |
Dere\GG10137-PA | 251 | GG10137-PA | 4..250 | 7..247 | 476 | 40.9 | Plus |
Dere\GG13756-PA | 252 | GG13756-PA | 4..246 | 7..242 | 470 | 40.3 | Plus |
Dere\GG18873-PA | 250 | GG18873-PA | 4..244 | 7..242 | 462 | 38.6 | Plus |
Dere\GG17505-PA | 247 | GG17505-PA | 4..243 | 7..244 | 448 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21119-PA | 247 | GH21119-PA | 4..247 | 5..248 | 1122 | 86.5 | Plus |
Dgri\GH17647-PA | 254 | GH17647-PA | 4..248 | 7..242 | 479 | 39.6 | Plus |
Dgri\GH18894-PA | 249 | GH18894-PA | 4..248 | 7..247 | 471 | 40 | Plus |
Dgri\GH12862-PA | 247 | GH12862-PA | 4..243 | 7..244 | 467 | 41 | Plus |
Dgri\GH12228-PA | 247 | GH12228-PA | 4..241 | 7..242 | 463 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rdhB-PB | 248 | CG7077-PB | 1..248 | 1..248 | 1249 | 100 | Plus |
rdhB-PA | 248 | CG7077-PA | 1..248 | 1..248 | 1249 | 100 | Plus |
antdh-PA | 250 | CG1386-PA | 4..246 | 7..244 | 469 | 40.7 | Plus |
CG9150-PB | 251 | CG9150-PB | 4..247 | 7..244 | 455 | 40.6 | Plus |
CG8757-PB | 252 | CG8757-PB | 4..246 | 7..242 | 439 | 39.1 | Plus |
CG40486-PC | 247 | CG40486-PC | 4..243 | 7..244 | 438 | 36.6 | Plus |
CG40486-PB | 247 | CG40486-PB | 4..243 | 7..244 | 438 | 36.6 | Plus |
CG9360-PA | 251 | CG9360-PA | 4..245 | 7..242 | 431 | 38 | Plus |
CG40485-PC | 247 | CG40485-PC | 4..243 | 7..244 | 423 | 38.9 | Plus |
CG40485-PB | 247 | CG40485-PB | 4..243 | 7..244 | 423 | 38.9 | Plus |
CG3301-PC | 250 | CG3301-PC | 4..244 | 7..242 | 414 | 37.8 | Plus |
CG3301-PB | 250 | CG3301-PB | 4..244 | 7..242 | 414 | 37.8 | Plus |
CG3301-PA | 250 | CG3301-PA | 4..244 | 7..242 | 414 | 37.8 | Plus |
CG10962-PB | 249 | CG10962-PB | 4..243 | 7..242 | 400 | 41.1 | Plus |
CG40485-PA | 231 | CG40485-PA | 4..192 | 7..190 | 314 | 37.9 | Plus |
CG31937-PA | 321 | CG31937-PA | 45..239 | 8..202 | 203 | 30 | Plus |
firl-PE | 318 | CG14946-PE | 56..244 | 10..199 | 183 | 27.2 | Plus |
firl-PC | 318 | CG14946-PC | 56..244 | 10..199 | 183 | 27.2 | Plus |
firl-PD | 318 | CG14946-PD | 56..244 | 10..199 | 183 | 27.2 | Plus |
CG31549-PB | 257 | CG31549-PB | 4..191 | 7..200 | 179 | 28.1 | Plus |
CG31549-PA | 257 | CG31549-PA | 4..191 | 7..200 | 179 | 28.1 | Plus |
CG9265-PD | 399 | CG9265-PD | 88..309 | 11..236 | 172 | 27.7 | Plus |
CG9265-PC | 399 | CG9265-PC | 88..309 | 11..236 | 172 | 27.7 | Plus |
CG9265-PB | 399 | CG9265-PB | 88..309 | 11..236 | 172 | 27.7 | Plus |
CG9265-PA | 399 | CG9265-PA | 88..309 | 11..236 | 172 | 27.7 | Plus |
Ldsdh1-PA | 320 | CG2254-PA | 59..268 | 10..221 | 161 | 26.8 | Plus |
Fbp2-PC | 256 | CG3763-PC | 2..191 | 5..202 | 150 | 22.3 | Plus |
Fbp2-PB | 256 | CG3763-PB | 2..191 | 5..202 | 150 | 22.3 | Plus |
Fbp2-PA | 256 | CG3763-PA | 2..191 | 5..202 | 150 | 22.3 | Plus |
CG10425-PA | 336 | CG10425-PA | 39..220 | 13..193 | 149 | 28.6 | Plus |
CG3699-PA | 251 | CG3699-PA | 5..185 | 9..200 | 147 | 28.9 | Plus |
Pdh-PD | 260 | CG4899-PD | 3..230 | 7..246 | 146 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10473-PA | 247 | GI10473-PA | 3..247 | 4..248 | 1153 | 88.2 | Plus |
Dmoj\GI14955-PA | 247 | GI14955-PA | 4..243 | 7..244 | 502 | 42.8 | Plus |
Dmoj\GI16085-PA | 260 | GI16085-PA | 4..254 | 7..242 | 472 | 39 | Plus |
Dmoj\GI14956-PA | 247 | GI14956-PA | 4..241 | 7..242 | 470 | 41.1 | Plus |
Dmoj\GI13477-PA | 251 | GI13477-PA | 4..247 | 7..244 | 456 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24329-PA | 247 | GL24329-PA | 1..247 | 1..248 | 1126 | 86.7 | Plus |
Dper\GL20303-PA | 249 | GL20303-PA | 4..245 | 7..244 | 489 | 42.4 | Plus |
Dper\GL19078-PA | 251 | GL19078-PA | 4..247 | 7..244 | 471 | 40.2 | Plus |
Dper\GL24037-PA | 250 | GL24037-PA | 4..244 | 7..242 | 456 | 40.2 | Plus |
Dper\GL24036-PA | 249 | GL24036-PA | 4..243 | 7..242 | 454 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20084-PA | 247 | GA20084-PA | 1..247 | 1..248 | 1133 | 87.1 | Plus |
Dpse\GA22691-PA | 279 | GA22691-PA | 31..273 | 7..242 | 487 | 42 | Plus |
Dpse\GA12578-PA | 249 | GA12578-PA | 4..245 | 7..244 | 484 | 42.4 | Plus |
Dpse\GA21577-PA | 251 | GA21577-PA | 4..247 | 7..244 | 469 | 40.2 | Plus |
Dpse\GA23088-PA | 247 | GA23088-PA | 4..243 | 7..244 | 452 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26414-PA | 248 | GM26414-PA | 1..248 | 1..248 | 1289 | 98 | Plus |
Dsec\GM11256-PA | 250 | GM11256-PA | 4..246 | 7..244 | 487 | 41.2 | Plus |
Dsec\GM17962-PA | 251 | GM17962-PA | 4..247 | 7..244 | 470 | 41 | Plus |
Dsec\GM24579-PA | 252 | GM24579-PA | 4..246 | 7..242 | 460 | 39.9 | Plus |
Dsec\GM13047-PA | 251 | GM13047-PA | 4..247 | 7..244 | 446 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20935-PA | 248 | GD20935-PA | 1..248 | 1..248 | 1297 | 98.8 | Plus |
Dsim\GD15999-PA | 250 | GD15999-PA | 4..246 | 7..244 | 486 | 41.2 | Plus |
Dsim\GD22600-PA | 251 | GD22600-PA | 4..247 | 7..244 | 471 | 41 | Plus |
Dsim\GD19832-PA | 250 | GD19832-PA | 4..244 | 7..242 | 455 | 39.8 | Plus |
Dsim\GD15972-PA | 251 | GD15972-PA | 4..247 | 7..244 | 445 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23155-PA | 247 | GJ23155-PA | 2..247 | 3..248 | 1152 | 87 | Plus |
Dvir\GJ14440-PA | 250 | GJ14440-PA | 4..244 | 7..242 | 479 | 40.7 | Plus |
Dvir\GJ18923-PA | 247 | GJ18923-PA | 4..243 | 7..244 | 465 | 41.4 | Plus |
Dvir\GJ18924-PA | 247 | GJ18924-PA | 4..241 | 7..242 | 461 | 39.8 | Plus |
Dvir\GJ18619-PA | 250 | GJ18619-PA | 4..244 | 7..242 | 460 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14250-PA | 247 | GK14250-PA | 3..245 | 4..246 | 1152 | 89.3 | Plus |
Dwil\GK15026-PA | 253 | GK15026-PA | 4..247 | 7..242 | 485 | 40.2 | Plus |
Dwil\GK16284-PA | 278 | GK16284-PA | 4..249 | 7..247 | 459 | 39.4 | Plus |
Dwil\GK14224-PA | 250 | GK14224-PA | 4..244 | 7..242 | 456 | 40.7 | Plus |
Dwil\GK15390-PA | 251 | GK15390-PA | 4..247 | 7..244 | 454 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10285-PA | 248 | GE10285-PA | 1..248 | 1..248 | 1277 | 96.8 | Plus |
Dyak\GE17313-PA | 250 | GE17313-PA | 4..246 | 7..244 | 487 | 40.7 | Plus |
Dyak\GE18948-PA | 251 | GE18948-PA | 4..250 | 7..247 | 475 | 40.5 | Plus |
Dyak\GE20052-PA | 266 | GE20052-PA | 18..260 | 7..242 | 463 | 39.5 | Plus |
Dyak\GE15260-PA | 247 | GE15260-PA | 4..243 | 7..244 | 453 | 38.7 | Plus |