Clone GH05377 Report

Search the DGRC for GH05377

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:53
Well:77
Vector:pOT2
Associated Gene/TranscriptCG2246-RD
Protein status:GH05377.pep: gold
Preliminary Size:1599
Sequenced Size:1447

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2246 2001-01-01 Release 2 assignment
CG2246 2001-07-04 Blastp of sequenced clone
CG2246 2003-01-01 Sim4 clustering to Release 3
CG2246 2008-04-29 Release 5.5 accounting
CG2246 2008-08-15 Release 5.9 accounting
CG2246 2008-12-18 5.12 accounting

Clone Sequence Records

GH05377.complete Sequence

1447 bp (1447 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047540

> GH05377.complete
AAGCAACGTCTGGCTGCCTATTTTTTTTATTGATTTCATTCCTATTCCGG
ATCCGATTCCGTGTTAATTGAAAACGTTAATCAGTCGCCCGCTAGTTGTG
CTCTTATCAACACTTTTCGCGCGTGTTTTCCTGCATTAGGCAGCGTACGG
CCACCAAAGCGTTGCAGGAGCGACATGGATAACACCTCCACCTCGGACAT
TGTCATCATCAATGGCAACTCGCATCCGGATCTGGCCAATATGGTGGCCG
AGCGTATGGGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGTCCAAT
AGGGAGACTATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGACATCTA
CATCATCCAAACGGGCACAAAGGATGCCAACAATAATATCATGGAGCTTC
TGATTATGGCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCGTGGGA
GTGATTCCATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAGCGCGG
CTGCATTGTGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGGCCTGA
CGCACATCATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCTTCTTT
GACATACCCGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAATATAT
TCAAGAGAGCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCGCAATC
CGGGCGTGGCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTCTTGGC
CTGGCCGTCATCCATGGCGAACAGAAGGAAACGGATGCCGATGAGGTCGA
CGGTCGGTACTCCCCTCCACCGACCAGAAACTCTACTCCACAACACGCCC
CAACCAGCAGCGCCCGCCAGCGAACCACCTCGGTTTCGGTGGGTGTTCCG
GAGCACATTGTCAAGGTCAAGCCACCGCTGACCATTGTGGGAGATGTCAG
TGGACGCATCGCCATCATGGTGGATGACCTGATCGACGATGTGCAGGCCT
TCGTGGCCGCCGCTGAGATGCTGAAGGAGAACGGTGCCTGCAAGATATAC
GTGCTGGCCACGCATGGTCTGCTTAGCTCAGATGCACCGCGTCAGCTGGA
CGAGTCGCCCATCGATGAGATCGTTGTAACCAATACCATTCCACACGAGA
TCCAAAAGCTGCAGTGCCATAAGATCAAGACGATCGACATCTCCATTCTG
ATCGCTGAGGCCATTCGCCGCATTCACAACAAGGAGTCCATGTCCTATCT
GTTCCGCAACGTAACGCTGGAGGACTAGGGGACCCACTCACTCATATAAC
CACTCACAAGTCACAAAAATAGTGTTGCAACCGACCCGTTTTGGGTCGTT
TTTTGTTTGTTTATCGCTTTTAGACATCAATTCAACGAGCGCCCAGCGCA
CGTTTGCTCAAATAAAATTGATTGATCCCAAAAAAAAAAAAAAAAAA

GH05377.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2246-RD 1782 CG2246-RD 95..1524 1..1430 7150 100 Plus
CG2246-RF 1907 CG2246-RF 433..1729 134..1430 6485 100 Plus
CG2246-RE 1632 CG2246-RE 48..874 1..827 4135 100 Plus
CG2246-RE 1632 CG2246-RE 930..1534 826..1430 3025 100 Plus
CG2246-RF 1907 CG2246-RF 95..228 1..134 670 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26415637..26415948 1429..1118 1560 100 Minus
chr3R 27901430 chr3R 26417564..26417852 660..372 1445 100 Minus
chr3R 27901430 chr3R 26417912..26418149 372..135 1160 99.2 Minus
chr3R 27901430 chr3R 26417342..26417508 827..661 835 100 Minus
chr3R 27901430 chr3R 26416015..26416162 1119..972 740 100 Minus
chr3R 27901430 chr3R 26416230..26416377 973..826 725 99.3 Minus
chr3R 27901430 chr3R 26422650..26422781 134..1 575 97 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30593110..30593422 1430..1118 1565 100 Minus
3R 32079331 3R 30595040..30595328 660..372 1445 100 Minus
3R 32079331 3R 30595389..30595626 372..135 1190 100 Minus
3R 32079331 3R 30594818..30594984 827..661 835 100 Minus
3R 32079331 3R 30593489..30593636 1119..972 740 100 Minus
3R 32079331 3R 30593704..30593851 973..826 740 100 Minus
3R 32079331 3R 30600124..30600257 134..1 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30333941..30334253 1430..1118 1565 100 Minus
3R 31820162 3R 30335871..30336159 660..372 1445 100 Minus
3R 31820162 3R 30336220..30336457 372..135 1190 100 Minus
3R 31820162 3R 30335649..30335815 827..661 835 100 Minus
3R 31820162 3R 30334535..30334682 973..826 740 100 Minus
3R 31820162 3R 30334320..30334467 1119..972 740 100 Minus
3R 31820162 3R 30340955..30341088 134..1 670 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:32:55 has no hits.

GH05377.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:33:49 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26415637..26415946 1120..1429 100 <- Minus
chr3R 26416015..26416161 973..1119 100 <- Minus
chr3R 26416231..26416375 828..972 99 <- Minus
chr3R 26417342..26417508 661..827 100 <- Minus
chr3R 26417564..26417852 372..660 100 <- Minus
chr3R 26417913..26418149 135..371 99 <- Minus
chr3R 26422650..26422781 1..134 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:18:03 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 21..1164 135..1278 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:37 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RI 15..706 135..827 99 -> Plus
CG2246-RI 765..1215 828..1278 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:57:16 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 21..1164 135..1278 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:03 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 21..1164 135..1278 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:20 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 21..1164 135..1278 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:07 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RD 48..1476 1..1429 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:37 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RD 48..1476 1..1429 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:57:16 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RD 67..1495 1..1429 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:03 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RD 48..1476 1..1429 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:20 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RD 67..1495 1..1429 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:49 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30593111..30593420 1120..1429 100 <- Minus
3R 30593489..30593635 973..1119 100 <- Minus
3R 30593705..30593849 828..972 100 <- Minus
3R 30594818..30594984 661..827 100 <- Minus
3R 30595040..30595328 372..660 100 <- Minus
3R 30595390..30595626 135..371 100 <- Minus
3R 30600124..30600257 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:49 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30593111..30593420 1120..1429 100 <- Minus
3R 30593489..30593635 973..1119 100 <- Minus
3R 30593705..30593849 828..972 100 <- Minus
3R 30594818..30594984 661..827 100 <- Minus
3R 30595040..30595328 372..660 100 <- Minus
3R 30595390..30595626 135..371 100 <- Minus
3R 30600124..30600257 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:49 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30593111..30593420 1120..1429 100 <- Minus
3R 30593489..30593635 973..1119 100 <- Minus
3R 30593705..30593849 828..972 100 <- Minus
3R 30594818..30594984 661..827 100 <- Minus
3R 30595040..30595328 372..660 100 <- Minus
3R 30595390..30595626 135..371 100 <- Minus
3R 30600124..30600257 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:57:16 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26418833..26419142 1120..1429 100 <- Minus
arm_3R 26419211..26419357 973..1119 100 <- Minus
arm_3R 26419427..26419571 828..972 100 <- Minus
arm_3R 26420540..26420706 661..827 100 <- Minus
arm_3R 26420762..26421050 372..660 100 <- Minus
arm_3R 26421112..26421348 135..371 100 <- Minus
arm_3R 26425846..26425979 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:04 Download gff for GH05377.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30340955..30341088 1..134 100   Minus
3R 30333942..30334251 1120..1429 100 <- Minus
3R 30334320..30334466 973..1119 100 <- Minus
3R 30334536..30334680 828..972 100 <- Minus
3R 30335649..30335815 661..827 100 <- Minus
3R 30335871..30336159 372..660 100 <- Minus
3R 30336221..30336457 135..371 100 <- Minus

GH05377.pep Sequence

Translation from 174 to 1277

> GH05377.pep
MDNTSTSDIVIINGNSHPDLANMVAERMGIKNGGCSVFHKSNRETIVEIS
DSVRGKDIYIIQTGTKDANNNIMELLIMAYACKTSSARSIVGVIPYLPYS
KQCKMRKRGCIVSKLLAKMMCTSGLTHIITMDLHQKEIQGFFDIPVDNLR
ASPFLLQYIQESIPDYRNSVIVARNPGVAKKANSYAERLRLGLAVIHGEQ
KETDADEVDGRYSPPPTRNSTPQHAPTSSARQRTTSVSVGVPEHIVKVKP
PLTIVGDVSGRIAIMVDDLIDDVQAFVAAAEMLKENGACKIYVLATHGLL
SSDAPRQLDESPIDEIVVTNTIPHEIQKLQCHKIKTIDISILIAEAIRRI
HNKESMSYLFRNVTLED*

GH05377.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23320-PA 406 GF23320-PA 21..406 1..367 1868 92 Plus
Dana\GF24649-PA 388 GF24649-PA 50..386 8..363 726 40.8 Plus
Dana\GF15832-PA 323 GF15832-PA 4..305 9..352 477 33 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11922-PA 406 GG11922-PA 21..406 1..367 1920 95.1 Plus
Dere\GG14016-PA 388 GG14016-PA 50..386 8..363 725 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14115-PA 406 GH14115-PA 21..406 1..367 1819 90.7 Plus
Dgri\GH15140-PA 388 GH15140-PA 50..386 8..363 727 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2246-PG 387 CG2246-PG 21..387 1..367 1870 100 Plus
CG2246-PM 367 CG2246-PM 1..367 1..367 1870 100 Plus
CG2246-PL 367 CG2246-PL 1..367 1..367 1870 100 Plus
CG2246-PK 367 CG2246-PK 1..367 1..367 1870 100 Plus
CG2246-PJ 385 CG2246-PJ 19..385 1..367 1870 100 Plus
CG2246-PB 387 CG2246-PB 21..387 1..367 1870 100 Plus
CG2246-PF 367 CG2246-PF 1..367 1..367 1870 100 Plus
CG2246-PD 367 CG2246-PD 1..367 1..367 1870 100 Plus
CG2246-PI 404 CG2246-PI 19..404 1..367 1840 95.1 Plus
CG2246-PH 406 CG2246-PH 21..406 1..367 1840 95.1 Plus
CG2246-PC 386 CG2246-PC 1..386 1..367 1840 95.1 Plus
CG2246-PA 406 CG2246-PA 21..406 1..367 1840 95.1 Plus
CG2246-PE 386 CG2246-PE 1..386 1..367 1840 95.1 Plus
CG2246-PO 377 CG2246-PO 21..377 1..367 1793 97.3 Plus
CG2246-PP 356 CG2246-PP 1..356 1..367 1788 97 Plus
CG2246-PN 376 CG2246-PN 21..376 1..367 1788 97 Plus
CG6767-PH 350 CG6767-PH 35..348 8..363 716 43.4 Plus
CG6767-PA 350 CG6767-PA 35..348 8..363 716 43.4 Plus
CG6767-PC 354 CG6767-PC 35..352 8..363 712 42.9 Plus
CG6767-PJ 354 CG6767-PJ 35..352 8..363 712 42.9 Plus
CG6767-PF 369 CG6767-PF 50..367 8..363 712 42.9 Plus
CG6767-PD 373 CG6767-PD 50..371 8..363 708 42.5 Plus
CG6767-PG 373 CG6767-PG 35..371 8..363 697 40.8 Plus
CG6767-PI 373 CG6767-PI 35..371 8..363 697 40.8 Plus
CG6767-PB 388 CG6767-PB 50..386 8..363 697 40.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10642-PA 405 GI10642-PA 21..405 1..367 1836 91.5 Plus
Dmoj\GI12077-PA 388 GI12077-PA 50..386 8..363 726 40.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14002-PA 274 GL14002-PA 21..237 1..217 1141 97.2 Plus
Dper\GL20451-PA 101 GL20451-PA 1..101 267..367 508 97 Plus
Dper\GL14515-PA 101 GL14515-PA 1..101 267..367 508 97 Plus
Dper\GL19127-PA 369 GL19127-PA 4..313 9..360 478 33.1 Plus
Dper\GL12852-PA 213 GL12852-PA 50..211 8..144 319 42 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26930-PB 368 GA26930-PB 1..368 1..367 1877 96.2 Plus
Dpse\GA26930-PC 387 GA26930-PC 1..387 1..367 1846 91.5 Plus
Dpse\GA26930-PA 407 GA26930-PA 21..407 1..367 1846 91.5 Plus
Dpse\GA19849-PA 387 GA19849-PA 50..385 8..363 727 40.9 Plus
Dpse\GA27810-PA 369 GA27810-PA 4..315 9..362 484 33.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12142-PA 406 GM12142-PA 21..406 1..367 1920 95.1 Plus
Dsec\GM24850-PA 388 GM24850-PA 50..386 8..363 726 40.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12902-PA 388 GD12902-PA 50..386 8..363 726 40.8 Plus
Dsim\GD15073-PA 103 GD15073-PA 1..103 265..367 539 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22998-PA 405 GJ22998-PA 21..405 1..367 1829 91.2 Plus
Dvir\GJ13347-PA 371 GJ13347-PA 40..369 8..363 692 39.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13119-PA 405 GK13119-PA 21..405 1..367 1840 91.2 Plus
Dwil\GK17570-PA 388 GK17570-PA 50..386 8..363 725 40.8 Plus
Dwil\GK18441-PA 310 GK18441-PA 4..296 8..342 568 36.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23373-PA 406 GE23373-PA 21..406 1..367 1920 95.1 Plus
Dyak\GE21218-PA 388 GE21218-PA 50..386 8..363 726 40.8 Plus

GH05377.hyp Sequence

Translation from 174 to 1277

> GH05377.hyp
MDNTSTSDIVIINGNSHPDLANMVAERMGIKNGGCSVFHKSNRETIVEIS
DSVRGKDIYIIQTGTKDANNNIMELLIMAYACKTSSARSIVGVIPYLPYS
KQCKMRKRGCIVSKLLAKMMCTSGLTHIITMDLHQKEIQGFFDIPVDNLR
ASPFLLQYIQESIPDYRNSVIVARNPGVAKKANSYAERLRLGLAVIHGEQ
KETDADEVDGRYSPPPTRNSTPQHAPTSSARQRTTSVSVGVPEHIVKVKP
PLTIVGDVSGRIAIMVDDLIDDVQAFVAAAEMLKENGACKIYVLATHGLL
SSDAPRQLDESPIDEIVVTNTIPHEIQKLQCHKIKTIDISILIAEAIRRI
HNKESMSYLFRNVTLED*

GH05377.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2246-PM 367 CG2246-PM 1..367 1..367 1870 100 Plus
CG2246-PL 367 CG2246-PL 1..367 1..367 1870 100 Plus
CG2246-PK 367 CG2246-PK 1..367 1..367 1870 100 Plus
CG2246-PF 367 CG2246-PF 1..367 1..367 1870 100 Plus
CG2246-PD 367 CG2246-PD 1..367 1..367 1870 100 Plus