Clone GH05406 Report

Search the DGRC for GH05406

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:54
Well:6
Vector:pOT2
Associated Gene/TranscriptmRpS30-RA
Protein status:GH05406.pep: gold
Preliminary Size:1300
Sequenced Size:1824

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8470 2002-06-12 Blastp of sequenced clone
CG8470 2003-01-01 Sim4 clustering to Release 3
mRpS30 2008-04-29 Release 5.5 accounting
mRpS30 2008-08-15 Release 5.9 accounting
mRpS30 2008-12-18 5.12 accounting

Clone Sequence Records

GH05406.complete Sequence

1824 bp (1824 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122095

> GH05406.complete
CACACTGCAGCAATGACATAACCTAGTTATTGTCAAAAAACTGAAGTCAA
TTCTATTCCTTCGAAAACATAAATCGTAACTTGCGTTAGGTTCGACGGCA
TGTTGAAGCTTAACCGTGTTCGCCATCTGCGAACGACGTACAAGCGCTGT
TTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGTACGGACGCAGAGCCGGC
ATATCCGGAGATTCAGGATCTGTCCTTCAAGGCGCGCAAGCAGAAGGATG
CGGCCAACTGGCACGAGGAAATCCGGCAGGTGCCGACGGTGGAGGAGAAG
ATGATCAAGATCAATATGCCCCGCTATTACGGCTTCAAGGTGGTCGACTT
CAACGACTCGAAAATCCCCTACAATGCACTGCCGCTCACGCAACATTATA
CGCGCACAGTGCTCGAGGATTTGCCATCTGAAACGGATAAGAAGGCACAG
GCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCGAGCGTGGATGGTCTTTT
CAAGGCGGCTCGCGGGGATGTTATTGATGCCCTCGAGTTTGCCCACGACT
ACTACAAGCATCTGGAAAAGCAACACAACTCTGCCGAATCGAACCCCGTT
GAACGTGAGCGCATCCTAACGCAGATCATTGTAGAACAGCTGAACAGAGC
TCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCACCTGGATGAGCTCGATG
TCGACTACAATCCACGCCACGAAGCGTTCTGGGCCGTTGGCGGCGTAGAT
CCTCCCAAGAACGTGCAGAAATCGAAGAAGGGCCGGGAATGGCAAAAGGA
TATGGCAAACGAGAGCGTTGATCGGATGGTTCAGTATACGGGAGCGCCGT
ATCTTGCCCTACGCCATCGCAAGCAATTGACGCCGTGGAAAACGGAAGCG
GAAAGCGAAAACCTCGAGCTGAGCAAACAGCTGCCCCGTTTCAAGCACGA
CCCGCGAACCCTCGGCTACAGCACCAAGCATCAGCACGCCACCAATGTGC
CAGGCTATTGGCCCAAAGGAAATGAGAATAACTTCGGCCTGCTCTCATTT
CAATCGCGTGCACACCTGCAGATCCGTCCGAAATCGTTCGGCGAGCAGGA
TCAGCTGGAGGCATTGCATTCGCTGGCGATTAAATCGTCATACGCCTGGC
TTTTGGCCCAGGCGAACTACAATGGCTTCAACACCTACAACGAACTGACC
TATCCCATGAACACTCAAACTGTGATCACGAACGGCAGGGAATGGAGCTT
TTATGAGTATCAGCTTAATACGCTGCTGCTGCACGGCACAAACGTGGCGG
AAAATCCCCGTGTCAACTTCTGTCGCGGTACAAAGCCACTTCCACTGTAC
GCCGAGATTTCGGCAAGCGGCAAGTGCGTTGATTTCAACGATAACGCACT
GCGGCACCTGCTCAATTTCTATGCCAATGCGCCATCGATTCAGCGGAGCA
TTGGGGAGCAGCAGCCGTATGTTGCCTCCGACGTTTCCGCCTATGAGAAC
GCCGAACAGCGTGACTTTATCAATAAGACCTTCAAATATTTGGCATCAAA
CCGACCGCGACACTTGGAGCTGCCCGAAATCTACCTGTGGGAGAAGCTAT
ACAAGATCGATAACAACAATCGTGCCATGGAGGCTAAGAGACGCTTCTTC
GAGCTGGACATCAATCCTTGGCAGCGAACGCTGGACACACATGACAAGGA
GTATGTTCCACGTGCGGTCCGACCAGACGTCCCTAAGAATAAGAACAGGT
TCAAGAAGACGTACTACCCTTAAATGAATAAATATAAAACACTTCCTAAG
GTTAAAAAAAAAAAAAAAAAAAAA

GH05406.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS30-RA 2124 mRpS30-RA 81..1884 1..1804 9020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15676658..15677903 558..1803 6230 100 Plus
chrX 22417052 chrX 15675937..15676494 1..558 2790 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15786794..15788040 558..1804 6235 100 Plus
X 23542271 X 15786073..15786630 1..558 2790 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15794892..15796138 558..1804 6235 100 Plus
X 23527363 X 15794171..15794728 1..558 2790 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:46:57 has no hits.

GH05406.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:48:06 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15675937..15676493 1..557 100 -> Plus
chrX 15676658..15677903 558..1803 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:18:05 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 1..1674 100..1773 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:39 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 1..1674 100..1773 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:02:34 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 1..1674 100..1773 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:20 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 1..1674 100..1773 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:22 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 1..1674 100..1773 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:50:49 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 3..1805 1..1803 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:39 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 21..1823 1..1803 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:02:34 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 27..1829 1..1803 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:20 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 3..1805 1..1803 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:22 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 27..1829 1..1803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:06 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
X 15786073..15786629 1..557 100 -> Plus
X 15786794..15788039 558..1803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:06 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
X 15786073..15786629 1..557 100 -> Plus
X 15786794..15788039 558..1803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:06 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
X 15786073..15786629 1..557 100 -> Plus
X 15786794..15788039 558..1803 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:02:34 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15680106..15680662 1..557 100 -> Plus
arm_X 15680827..15682072 558..1803 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:16 Download gff for GH05406.complete
Subject Subject Range Query Range Percent Splice Strand
X 15794171..15794727 1..557 100 -> Plus
X 15794892..15796137 558..1803 100   Plus

GH05406.pep Sequence

Translation from 99 to 1772

> GH05406.pep
MLKLNRVRHLRTTYKRCLSGQSQLQLNSTDAEPAYPEIQDLSFKARKQKD
AANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLTQHY
TRTVLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHD
YYKHLEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELD
VDYNPRHEAFWAVGGVDPPKNVQKSKKGREWQKDMANESVDRMVQYTGAP
YLALRHRKQLTPWKTEAESENLELSKQLPRFKHDPRTLGYSTKHQHATNV
PGYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYAW
LLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVA
ENPRVNFCRGTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRS
IGEQQPYVASDVSAYENAEQRDFINKTFKYLASNRPRHLELPEIYLWEKL
YKIDNNNRAMEAKRRFFELDINPWQRTLDTHDKEYVPRAVRPDVPKNKNR
FKKTYYP*

GH05406.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19982-PA 548 GF19982-PA 1..548 1..557 1741 57.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17915-PA 556 GG17915-PA 1..556 1..557 2726 91.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12536-PA 575 GH12536-PA 43..575 31..557 1949 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS30-PB 557 CG8470-PB 1..557 1..557 2968 100 Plus
mRpS30-PA 557 CG8470-PA 1..557 1..557 2968 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11197-PA 562 GI11197-PA 1..562 1..557 1986 66.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18060-PA 456 GL18060-PA 1..420 1..426 1552 68.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21100-PA 552 GA21100-PA 1..552 1..557 2033 68.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22582-PA 533 GM22582-PA 1..533 1..557 2693 90.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17243-PA 557 GD17243-PA 1..557 1..557 2894 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18480-PA 562 GJ18480-PA 1..562 1..557 2026 68.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19783-PA 561 GK19783-PA 1..561 1..557 1828 60.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17223-PA 553 GE17223-PA 1..553 1..557 2770 92.5 Plus

GH05406.hyp Sequence

Translation from 99 to 1772

> GH05406.hyp
MLKLNRVRHLRTTYKRCLSGQSQLQLNSTDAEPAYPEIQDLSFKARKQKD
AANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLTQHY
TRTVLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHD
YYKHLEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELD
VDYNPRHEAFWAVGGVDPPKNVQKSKKGREWQKDMANESVDRMVQYTGAP
YLALRHRKQLTPWKTEAESENLELSKQLPRFKHDPRTLGYSTKHQHATNV
PGYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYAW
LLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVA
ENPRVNFCRGTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRS
IGEQQPYVASDVSAYENAEQRDFINKTFKYLASNRPRHLELPEIYLWEKL
YKIDNNNRAMEAKRRFFELDINPWQRTLDTHDKEYVPRAVRPDVPKNKNR
FKKTYYP*

GH05406.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS30-PB 557 CG8470-PB 1..557 1..557 2968 100 Plus
mRpS30-PA 557 CG8470-PA 1..557 1..557 2968 100 Plus