BDGP Sequence Production Resources |
Search the DGRC for GH05406
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 54 |
Well: | 6 |
Vector: | pOT2 |
Associated Gene/Transcript | mRpS30-RA |
Protein status: | GH05406.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1824 |
Gene | Date | Evidence |
---|---|---|
CG8470 | 2002-06-12 | Blastp of sequenced clone |
CG8470 | 2003-01-01 | Sim4 clustering to Release 3 |
mRpS30 | 2008-04-29 | Release 5.5 accounting |
mRpS30 | 2008-08-15 | Release 5.9 accounting |
mRpS30 | 2008-12-18 | 5.12 accounting |
1824 bp (1824 high quality bases) assembled on 2002-06-12
GenBank Submission: AY122095
> GH05406.complete CACACTGCAGCAATGACATAACCTAGTTATTGTCAAAAAACTGAAGTCAA TTCTATTCCTTCGAAAACATAAATCGTAACTTGCGTTAGGTTCGACGGCA TGTTGAAGCTTAACCGTGTTCGCCATCTGCGAACGACGTACAAGCGCTGT TTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGTACGGACGCAGAGCCGGC ATATCCGGAGATTCAGGATCTGTCCTTCAAGGCGCGCAAGCAGAAGGATG CGGCCAACTGGCACGAGGAAATCCGGCAGGTGCCGACGGTGGAGGAGAAG ATGATCAAGATCAATATGCCCCGCTATTACGGCTTCAAGGTGGTCGACTT CAACGACTCGAAAATCCCCTACAATGCACTGCCGCTCACGCAACATTATA CGCGCACAGTGCTCGAGGATTTGCCATCTGAAACGGATAAGAAGGCACAG GCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCGAGCGTGGATGGTCTTTT CAAGGCGGCTCGCGGGGATGTTATTGATGCCCTCGAGTTTGCCCACGACT ACTACAAGCATCTGGAAAAGCAACACAACTCTGCCGAATCGAACCCCGTT GAACGTGAGCGCATCCTAACGCAGATCATTGTAGAACAGCTGAACAGAGC TCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCACCTGGATGAGCTCGATG TCGACTACAATCCACGCCACGAAGCGTTCTGGGCCGTTGGCGGCGTAGAT CCTCCCAAGAACGTGCAGAAATCGAAGAAGGGCCGGGAATGGCAAAAGGA TATGGCAAACGAGAGCGTTGATCGGATGGTTCAGTATACGGGAGCGCCGT ATCTTGCCCTACGCCATCGCAAGCAATTGACGCCGTGGAAAACGGAAGCG GAAAGCGAAAACCTCGAGCTGAGCAAACAGCTGCCCCGTTTCAAGCACGA CCCGCGAACCCTCGGCTACAGCACCAAGCATCAGCACGCCACCAATGTGC CAGGCTATTGGCCCAAAGGAAATGAGAATAACTTCGGCCTGCTCTCATTT CAATCGCGTGCACACCTGCAGATCCGTCCGAAATCGTTCGGCGAGCAGGA TCAGCTGGAGGCATTGCATTCGCTGGCGATTAAATCGTCATACGCCTGGC TTTTGGCCCAGGCGAACTACAATGGCTTCAACACCTACAACGAACTGACC TATCCCATGAACACTCAAACTGTGATCACGAACGGCAGGGAATGGAGCTT TTATGAGTATCAGCTTAATACGCTGCTGCTGCACGGCACAAACGTGGCGG AAAATCCCCGTGTCAACTTCTGTCGCGGTACAAAGCCACTTCCACTGTAC GCCGAGATTTCGGCAAGCGGCAAGTGCGTTGATTTCAACGATAACGCACT GCGGCACCTGCTCAATTTCTATGCCAATGCGCCATCGATTCAGCGGAGCA TTGGGGAGCAGCAGCCGTATGTTGCCTCCGACGTTTCCGCCTATGAGAAC GCCGAACAGCGTGACTTTATCAATAAGACCTTCAAATATTTGGCATCAAA CCGACCGCGACACTTGGAGCTGCCCGAAATCTACCTGTGGGAGAAGCTAT ACAAGATCGATAACAACAATCGTGCCATGGAGGCTAAGAGACGCTTCTTC GAGCTGGACATCAATCCTTGGCAGCGAACGCTGGACACACATGACAAGGA GTATGTTCCACGTGCGGTCCGACCAGACGTCCCTAAGAATAAGAACAGGT TCAAGAAGACGTACTACCCTTAAATGAATAAATATAAAACACTTCCTAAG GTTAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS30-RA | 2124 | mRpS30-RA | 81..1884 | 1..1804 | 9020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15675937..15676493 | 1..557 | 100 | -> | Plus |
chrX | 15676658..15677903 | 558..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 1..1674 | 100..1773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 1..1674 | 100..1773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 1..1674 | 100..1773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 1..1674 | 100..1773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 1..1674 | 100..1773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 3..1805 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 21..1823 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 27..1829 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 3..1805 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS30-RA | 27..1829 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15786073..15786629 | 1..557 | 100 | -> | Plus |
X | 15786794..15788039 | 558..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15786073..15786629 | 1..557 | 100 | -> | Plus |
X | 15786794..15788039 | 558..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15786073..15786629 | 1..557 | 100 | -> | Plus |
X | 15786794..15788039 | 558..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15680106..15680662 | 1..557 | 100 | -> | Plus |
arm_X | 15680827..15682072 | 558..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15794171..15794727 | 1..557 | 100 | -> | Plus |
X | 15794892..15796137 | 558..1803 | 100 | Plus |
Translation from 99 to 1772
> GH05406.pep MLKLNRVRHLRTTYKRCLSGQSQLQLNSTDAEPAYPEIQDLSFKARKQKD AANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLTQHY TRTVLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHD YYKHLEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELD VDYNPRHEAFWAVGGVDPPKNVQKSKKGREWQKDMANESVDRMVQYTGAP YLALRHRKQLTPWKTEAESENLELSKQLPRFKHDPRTLGYSTKHQHATNV PGYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYAW LLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVA ENPRVNFCRGTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRS IGEQQPYVASDVSAYENAEQRDFINKTFKYLASNRPRHLELPEIYLWEKL YKIDNNNRAMEAKRRFFELDINPWQRTLDTHDKEYVPRAVRPDVPKNKNR FKKTYYP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19982-PA | 548 | GF19982-PA | 1..548 | 1..557 | 1741 | 57.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17915-PA | 556 | GG17915-PA | 1..556 | 1..557 | 2726 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12536-PA | 575 | GH12536-PA | 43..575 | 31..557 | 1949 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS30-PB | 557 | CG8470-PB | 1..557 | 1..557 | 2968 | 100 | Plus |
mRpS30-PA | 557 | CG8470-PA | 1..557 | 1..557 | 2968 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11197-PA | 562 | GI11197-PA | 1..562 | 1..557 | 1986 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18060-PA | 456 | GL18060-PA | 1..420 | 1..426 | 1552 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21100-PA | 552 | GA21100-PA | 1..552 | 1..557 | 2033 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22582-PA | 533 | GM22582-PA | 1..533 | 1..557 | 2693 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17243-PA | 557 | GD17243-PA | 1..557 | 1..557 | 2894 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18480-PA | 562 | GJ18480-PA | 1..562 | 1..557 | 2026 | 68.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19783-PA | 561 | GK19783-PA | 1..561 | 1..557 | 1828 | 60.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17223-PA | 553 | GE17223-PA | 1..553 | 1..557 | 2770 | 92.5 | Plus |
Translation from 99 to 1772
> GH05406.hyp MLKLNRVRHLRTTYKRCLSGQSQLQLNSTDAEPAYPEIQDLSFKARKQKD AANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLTQHY TRTVLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHD YYKHLEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELD VDYNPRHEAFWAVGGVDPPKNVQKSKKGREWQKDMANESVDRMVQYTGAP YLALRHRKQLTPWKTEAESENLELSKQLPRFKHDPRTLGYSTKHQHATNV PGYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYAW LLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVA ENPRVNFCRGTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRS IGEQQPYVASDVSAYENAEQRDFINKTFKYLASNRPRHLELPEIYLWEKL YKIDNNNRAMEAKRRFFELDINPWQRTLDTHDKEYVPRAVRPDVPKNKNR FKKTYYP*