Clone GH05422 Report

Search the DGRC for GH05422

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:54
Well:22
Vector:pOT2
Associated Gene/TranscriptEogt-RA
Protein status:GH05422.pep: gold
Preliminary Size:2200
Sequenced Size:1844

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9867 2001-01-01 Release 2 assignment
CG9867 2001-09-19 Blastp of sequenced clone
CG9867 2003-01-01 Sim4 clustering to Release 3
CG9867 2008-04-29 Release 5.5 accounting
CG9867 2008-08-15 Release 5.9 accounting
CG9867 2008-12-18 5.12 accounting

Clone Sequence Records

GH05422.complete Sequence

1844 bp (1844 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058292

> GH05422.complete
AACAATTAACATGGACAATAACATTATCCCGCTCATAATCGTCTTCTAGC
CGCTTAAGGCCAGGTGAGATCATCATCATCGCTGGCCGTGAAATGCACCT
GAAGATGCTGCCGTGGAAAGCGTGAGAAGTCGCAGGGAAATCGCTGGAAA
GTCGCACGCAACGAAGTACTTAAGTAGATCAAACGGAACCCAAGATGCCA
ATCCTGCCAATACTCATTGGGATACTACACTTGTCCCTGGCGGAGGACGC
CAAGCACCTCGATGGGTTCTCCCTGCCCAGCCTGCCGTCGGAACACCTCA
TCCGGTACCTGAACACCTTTCCCAAGCTGAAACAACAGCTGCCCACGAAT
CTCACCGGCAAGGGCACCATTTCATCCGCCTGCTGGGGCCACGAGCGGGA
CTGCACGCCAGCTGGCCGCTTCCAGACGCCCCAGTGCCCTGGGGAACATA
CCGGCTGGGCCAGGAGCAAGGAGGCACAGGTTAGGACCTTCTACAACCAG
GCCGACTTCGGGTACATCCAGGAGCAGCTCTCCCAACTGACGCCGCAATG
CGTGCCAACCTATTTGGGCGATTCCTCGCTAGAGTGCACGCACTACCTGC
GCTTTTGTCGTGGGCGGAATCTTCTCTTCGACTTTCGGGGCTTGGAGCAG
CGGGAAGAGCGCATTCGTTACCATATGGATGTGCTGGGACCAGGACAGCT
GCTGGGGCACTGCAAGTTGAATCGGACTCGACTGTCGGGCGAAATGGAGC
ACATTGGATCGGCTCTGCAGTCCTGGGGTCCGGAGTTGCGTAATTTTGAT
GTCTTACCACATCCCGTTCTGGAGAGCGGTCTCTGCGATGTGGTGGTGAA
TACGCCCACTTTCATCATGAAAATCGATGCCACGTACAACATGTATCATC
ATTTCTGCGACTTCTTCAACCTGTATGCCTCGCTCTTTGTCAACCAGTCG
CATCCGGCGGCCTTCAACACGGATGTGCAGATACTTATATGGGAGACCTA
TCCGTACGATTCGCCCTTCAGGGACACATTTAAGGCCTTCTCGCAACGAC
CAGTATGGACACTCAGCGATGTGGAGGGCAAGCGGGTATGCTTCAAGAAC
GTTGTGCTGCCGCTGCTGCCCAGGATGATCTTTGGCTTATTCTACAATAC
ACCCATAATCCAAGGCTGCTCGAATAGTGGACTCTTCCGCGCCTTCTCCG
AGTTCATTCTGCACCGCCTGCAGATTCCCTACAAGCCGCCACAGCAAAAG
ATCAGAATAACATATCTATCGCGTCGCACAAAGTACCGGCAAGTGCTGAA
TGAAGACGAGCTGCTGGCCCCCCTGGAGGCCAACGATAAGTACGATGTAC
AGCGTGTTTCCTATGAAAGGCTCCCCTTTACCAACCAGTTGGCCATCACA
CGGAACACGGACATACTCATCGGCATGCATGGCGCTGGCCTGACGCACTT
GCTCTTCCTGCCCAACTGGGCCTGCATTTTTGAGCTGTACAACTGCGAGG
ATCCGAATTGCTACAAGGACTTGGCTCGCCTACGTGGCGTTCGCTACCGC
ACTTGGGAGCAGCGGGACTTGGTGTACCCACAGGACGAGGGTCATCATCC
CGAGGGCGGCGCACACGCCAAGTTTACCAATTATAGCTTTGATGTGAAGG
AATTTGTGCATCTTGTCGATGGAGCAGCCGAGGAAATTCTTTCCCACAAG
GAATTCCCCCGACGGGCATCAGAAAATCCCTCCAAAACGCAGCGCAACGA
GCTGTAGATTGCCTCAATTGTGATTAAATGCATTTATTTTGCTTTATGCC
AGACCCAAAATAAATCGGTATTATACAAAAAAAAAAAAAAAAAA

GH05422.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9867-RA 1891 CG9867-RA 45..1874 1..1830 9150 100 Plus
CG9867.a 1850 CG9867.a 68..1850 48..1830 8915 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2380841..2381997 1..1157 5710 99.6 Plus
chr2L 23010047 chr2L 2382316..2382774 1368..1826 2220 98.9 Plus
chr2L 23010047 chr2L 2382050..2382262 1158..1370 1050 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:32:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2381140..2382296 1..1157 5785 100 Plus
2L 23513712 2L 2382615..2383077 1368..1830 2315 100 Plus
2L 23513712 2L 2382349..2382561 1158..1370 1065 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2381140..2382296 1..1157 5785 100 Plus
2L 23513712 2L 2382615..2383077 1368..1830 2315 100 Plus
2L 23513712 2L 2382349..2382561 1158..1370 1065 100 Plus
Blast to na_te.dros performed 2019-03-16 05:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7007..7058 136..85 125 71.2 Minus

GH05422.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:19:27 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2380841..2381997 1..1157 99 -> Plus
chr2L 2382050..2382261 1158..1369 99 -> Plus
chr2L 2382318..2382774 1370..1826 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:18:06 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
CG9867-RA 1..1563 195..1757 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:57:03 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
CG9867-RA 1..1563 195..1757 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:22 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
Eogt-RB 1..1563 195..1757 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:26:15 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
CG9867-RA 1..1563 195..1757 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:00:30 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
Eogt-RB 1..1563 195..1757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:43:11 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
CG9867-RA 1..1826 1..1826 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:57:03 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
CG9867-RA 1..1826 1..1826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:22 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
Eogt-RA 44..1869 1..1826 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:26:15 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
CG9867-RA 1..1826 1..1826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:00:30 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
Eogt-RA 44..1869 1..1826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:19:27 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2381140..2382296 1..1157 100 -> Plus
2L 2382349..2382560 1158..1369 100 -> Plus
2L 2382617..2383073 1370..1826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:19:27 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2381140..2382296 1..1157 100 -> Plus
2L 2382349..2382560 1158..1369 100 -> Plus
2L 2382617..2383073 1370..1826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:19:27 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2381140..2382296 1..1157 100 -> Plus
2L 2382349..2382560 1158..1369 100 -> Plus
2L 2382617..2383073 1370..1826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:22 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2381140..2382296 1..1157 100 -> Plus
arm_2L 2382349..2382560 1158..1369 100 -> Plus
arm_2L 2382617..2383073 1370..1826 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:03:25 Download gff for GH05422.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2382349..2382560 1158..1369 100 -> Plus
2L 2382617..2383073 1370..1826 100   Plus
2L 2381140..2382296 1..1157 100 -> Plus

GH05422.hyp Sequence

Translation from 194 to 1756

> GH05422.hyp
MPILPILIGILHLSLAEDAKHLDGFSLPSLPSEHLIRYLNTFPKLKQQLP
TNLTGKGTISSACWGHERDCTPAGRFQTPQCPGEHTGWARSKEAQVRTFY
NQADFGYIQEQLSQLTPQCVPTYLGDSSLECTHYLRFCRGRNLLFDFRGL
EQREERIRYHMDVLGPGQLLGHCKLNRTRLSGEMEHIGSALQSWGPELRN
FDVLPHPVLESGLCDVVVNTPTFIMKIDATYNMYHHFCDFFNLYASLFVN
QSHPAAFNTDVQILIWETYPYDSPFRDTFKAFSQRPVWTLSDVEGKRVCF
KNVVLPLLPRMIFGLFYNTPIIQGCSNSGLFRAFSEFILHRLQIPYKPPQ
QKIRITYLSRRTKYRQVLNEDELLAPLEANDKYDVQRVSYERLPFTNQLA
ITRNTDILIGMHGAGLTHLLFLPNWACIFELYNCEDPNCYKDLARLRGVR
YRTWEQRDLVYPQDEGHHPEGGAHAKFTNYSFDVKEFVHLVDGAAEEILS
HKEFPRRASENPSKTQRNEL*

GH05422.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Eogt-PA 520 CG9867-PA 1..520 1..520 2822 100 Plus
Eogt-PB 520 CG9867-PB 1..520 1..520 2822 100 Plus

GH05422.pep Sequence

Translation from 194 to 1756

> GH05422.pep
MPILPILIGILHLSLAEDAKHLDGFSLPSLPSEHLIRYLNTFPKLKQQLP
TNLTGKGTISSACWGHERDCTPAGRFQTPQCPGEHTGWARSKEAQVRTFY
NQADFGYIQEQLSQLTPQCVPTYLGDSSLECTHYLRFCRGRNLLFDFRGL
EQREERIRYHMDVLGPGQLLGHCKLNRTRLSGEMEHIGSALQSWGPELRN
FDVLPHPVLESGLCDVVVNTPTFIMKIDATYNMYHHFCDFFNLYASLFVN
QSHPAAFNTDVQILIWETYPYDSPFRDTFKAFSQRPVWTLSDVEGKRVCF
KNVVLPLLPRMIFGLFYNTPIIQGCSNSGLFRAFSEFILHRLQIPYKPPQ
QKIRITYLSRRTKYRQVLNEDELLAPLEANDKYDVQRVSYERLPFTNQLA
ITRNTDILIGMHGAGLTHLLFLPNWACIFELYNCEDPNCYKDLARLRGVR
YRTWEQRDLVYPQDEGHHPEGGAHAKFTNYSFDVKEFVHLVDGAAEEILS
HKEFPRRASENPSKTQRNEL*

GH05422.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15506-PA 524 GF15506-PA 1..524 1..520 2426 84.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24854-PA 525 GG24854-PA 1..525 1..520 2693 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10258-PA 520 GH10258-PA 7..511 4..509 2190 79.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Eogt-PA 520 CG9867-PA 1..520 1..520 2822 100 Plus
Eogt-PB 520 CG9867-PB 1..520 1..520 2822 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15496-PA 514 GI15496-PA 1..501 1..504 2177 79.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26553-PA 563 GL26553-PA 21..497 18..497 2276 86.9 Plus
Dper\GL18361-PA 256 GL18361-PA 9..252 244..502 1144 83 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22085-PA 522 GA22085-PA 19..506 16..506 2306 85.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18337-PA 296 GM18337-PA 1..296 225..520 1577 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23152-PA 519 GD23152-PA 1..519 1..520 2756 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17287-PA 526 GJ17287-PA 33..526 25..520 2196 80.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23934-PA 499 GK23934-PA 3..478 26..505 2159 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18152-PA 525 GE18152-PA 1..525 1..520 2695 95.2 Plus