Clone GH05455 Report

Search the DGRC for GH05455

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:54
Well:55
Vector:pOT2
Associated Gene/TranscriptPif1A-RI
Protein status:GH05455.pep: gold
Preliminary Size:3310
Sequenced Size:3271

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9808 2001-01-01 Release 2 assignment
CG11773 2001-01-01 Release 2 assignment
CG32940 2002-06-07 Blastp of sequenced clone
Pif1A 2008-04-29 Release 5.5 accounting
Pif1A 2008-08-15 Release 5.9 accounting
Pif1B 2008-08-15 Release 5.9 accounting
Pif1A 2008-12-18 5.12 accounting
Pif1B 2008-12-18 5.12 accounting

Clone Sequence Records

GH05455.complete Sequence

3271 bp (3271 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119473

> GH05455.complete
TCATTACTCTTATTTAAACATTGTTAATATTTTGAGCAAAGAAATCGCTA
AAATTCAAGTTTTATTTTGTTCCCGTACATACAGAACCGGACGGAAACTC
CCAAAAGGCACAATTCAACCCACAGTCACAGTCACAGTCACAGCCACAGT
CAAAGTCACAACCACAGGATCGTAGCCACAGTTCAGCCGTATAGCAACTG
TGCCACGCCCACAGCCCCGCCCACGCCAAGCAAGAGGCACTGCAACCAGG
TGAGCTCGTGGCAGAGCAGCAGCCTCAGCGAGAGCGGAGTGTTCGTAGAG
TGCGATCTGCTTTCGAATCCCAATCCCATTGGCCACCCGCATCTGCAGTT
CTATCAGGAGAGATTGGAGCAGTTGGAGGGCAAGCTGCTGATCTACGAGA
GCAGCGGCGAGACCCAGGCACGGCACTTGGCCCAGAGACTGCAGCGGGAA
CTGCAGCTGGAGAAGGATCTCAAAGAGCTTGCGGACCGAGTGGAATTGCT
AATCGAGCAAAACGCCCAGTTGGAGGAGGCCAAGTGCGAGTTTGAGGAGG
CCGAGAACGATACACGACTCCATTTGCAGCGTAACGAGGTGGAACTTGAA
ATTCTTCGCCAGCGCAACGTGGAGTTGGAATTCGGCAAGGAAGCACTAGG
CGCCAAGTATCAGGATTGCAGGGCGGAGGTACTAATCCTTCGAGAGGATC
TAGCGGCAGCTGAAACCCAACTGGAGCATCTGCAGGCCGAAAGGAAGCAA
GCCAGAAAGGAGCTTCAGGATCTGAGAAGATCGCTTCCATTACTCCTAAT
CTTCCGCTTGTTATCACTAGCCAAAATGGGCAACGAGGAATCCTCCCCGG
GAGGCAGCCCCCGCCTCTCCTCGGGCTACACTTCTTCTATACACCAGGAT
CGAGATTTCAGTGCCAAGATCCAAACAACGGAGTTTGACCTCGGTCAAGC
GGGATTTACCGATTCCGGCGAGGAACGGGAGATCGTTTACCTAAAGGAAG
AGGTCAAGAGTCTGCGTAGCCAACTGAAAGAGCTAAATGCCCGGCACTAC
GAAGCCATGGAAACAGCAGACTCACACTGGGTAGATCTGGAGCAGCAGTA
CAAGGAGCGCGAGGAGGCCCAACAGGCCAAGGAGGCCAGTCTCAAGCAGA
AGATAGCCCAACTGCAAGATTGCCTCCGGGAGGATTCCCGAGCGGCGACC
GAAAAGATCCAGCAGCTGGAGGAGGGGGAACTGTCATTGAAGTCCTGCCT
GGTCCGCATGACCAAGGAGCATCGCGACCTGCTCACCGAGAATCGCACTC
TGCAGTGCAGCTTGGAGAGTCTAATGGCCAAAATGGAAAAGGAGGCGGAA
CACAAGATGCCCCTAACAGAGGCTCTAGAAAACGAGAGGCGCAAAACCCA
GGCACTGATGGATGACCTTATCTTTGCCAAGAAGGTGCAGCAGAACACCG
AGGATCAGTTGAGGCAGGAGACGGATGCTTTGCGCACCCAGATCTTCAAC
ATCAAAAAGGATTACCTGCACATCGAGGTCACAAATGGCGAGCTGAAAGA
GGAGGTGGGCACGCTGGAGAACAAAATCCGCCAGATGGAGAACCAAATGA
GGGATTCGGAGGAGCGGGCGCGCTGCCTGGAGGACGAGCTGCGAACCAAG
GACGAACAATGCCAGCTCTTGGAACGCAAACTGGGCGTTATGCCCGAGGG
CTACAGCCTGGCCGATGAACTCCATGATAGTCCTGCGAAGCGGGCCAAGA
AGGATGAGGTACCGAGCCTCCAGGCTGCCAGCCAGGGACTGGGCGTGGCC
CTACTCGATCTCGAGGGTCGTGATTTTGGTCTACCACTGCACAAGGACTT
CCAAGCAATTGCCTGCAGTGTAAAGCAACTGGCGGATACCCTTCTCTCAC
AGAGTCCGTCCGAGGTGAGTCTCCAAAGCAAAGAGCCCGCCAAGCCAGCT
GGTTCGGAACCCGAAGGCTCCAGTTGGGCTACGGTCCAGGATGCCTCCTC
AGAAAAAATACCTGAGACAGGACTATCAACTGTGACTAGTCTAGAATGCC
AGGGAAATCAAGAAACTCAAGATAATCAGGTCATTCAAGAAAATCCGGGA
AGTCTAGAAAGTCAAGTCGATTCAGAATATCTGGAAAGTCAAGAAAGAAA
TCTCGTTAGCAGCAAGAAATCTAGTTATGTTAGTGTCGTGACATCCTCAT
GCCGGTCAATAGTACGGGAATTAGCTGGGGGATCTGCCCAAAAATCTGAA
CTACACCTTGGTGAATCAGACAGCAGGGCGAATCCGCAGATAATTCGACC
AACAGATGAGCAAGAGAAGAAGATCACCGCGGTGCCCTATTCCATGAGAC
AGATGTTCAACGAGGTTTGTTCTGTGGATCAGCAGCACGAACCCGAGCTC
AAAAAGAAAAGCAAAAAGCGAGCAAAGAATAAGAAGGAGAAGCATCCAAG
ACCAAACAGTCACCAGCGAAAAATACAGCGTTTCCTCTTCCGTCACATTT
ACCGTCCACGTACGCTCAATCGAACTCTGGGTTTCCCTCTTCAAAAGAGC
CTCTCCTGCAGTAGTTTCCACTCTCTGTTGTCAGTTCACTCGGTTCACTC
GGCCAGATCCGGAATTTCCCTGCACTCCCTTCACGCTGAAGTTGTTAATC
TTAATTGGGAATCTCTGGCCAGCGTGTCATTTGTACAAACGGACGAGGTG
AAAACCCTGGAGGAGGAGGTTCAGGTCACGACACAGTGCAATGAAAAGGA
GATGCAAGTTCAACCAGAGACGATTGAGTGTGGAACACAGGTCGATGTGG
GTGTGGAGCAACGACTGCTCCTGATGCCTCTGAGAACCAGGTGCTTCGTG
GATTTGATTCAGGGCGCCGTGGACGGATACCTCGATGTTGCCGCATTCCG
GACCCGTCTTCTTCACTTATGGGAGGGCGGAGAGGATTTCCGTGAGCATC
TTGAATTTTTGCAAGACATGTGGATTGAAAAGAGTACTCAGAAGACGCAG
GAGAGCTATGAAGGATTTGTGGCTGCTCTGGACTGTGTCCATAACCTAAA
GTTGGCCCTTAAGCCTGCATCTTCGGCGCTTTTGCAACAAATCGAGCAGC
GAATCCACACAAGACTTCTGCTCTTCCATAACCACAAGGCGGAATCGGAG
TTCTGCTGCACTGTCTACATTCCCGTGGAGAGGAGCAATTCCACCTTGTT
CAGAGCTAAGAAATAGAGCTTTATTTCTATGTAAATACACCAAACATAAA
TGTAAAAAAAAAAAAAAAAAA

GH05455.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pif1A-RC 5633 Pif1A-RC 2462..5633 82..3253 15860 100 Plus
Pif1A-RB 4196 Pif1A-RB 1025..4196 82..3253 15860 100 Plus
Pif1B-RA 6324 Pif1B-RA 1025..2857 82..1914 9165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4608414..4610229 1816..1 9050 99.9 Minus
chr3R 27901430 chr3R 4606920..4608359 3253..1814 7200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:33:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8782441..8784256 1816..1 9080 100 Minus
3R 32079331 3R 8780944..8782386 3256..1814 7215 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8523272..8525087 1816..1 9080 100 Minus
3R 31820162 3R 8521775..8523217 3256..1814 7215 100 Minus
Blast to na_te.dros performed 2019-03-16 20:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1863..1917 2061..2115 140 72.7 Plus

GH05455.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:13:05 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4606920..4608357 1816..3253 100 <- Minus
chr3R 4608415..4610229 1..1815 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:18:12 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RB 789..3927 74..3216 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:29:18 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RB 789..3927 74..3216 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:24 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RI 1..2391 826..3216 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:19:35 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RB 789..3927 74..3216 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:28 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RI 1..2391 826..3216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:58:34 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RB 1021..4196 74..3253 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:29:18 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RB 1021..4196 74..3253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:24 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RI 1..3253 1..3253 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:19:36 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RB 1021..4196 74..3253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:28 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RI 1..3253 1..3253 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:05 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8780947..8782384 1816..3253 100 <- Minus
3R 8782442..8784256 1..1815 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:05 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8780947..8782384 1816..3253 100 <- Minus
3R 8782442..8784256 1..1815 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:05 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8780947..8782384 1816..3253 100 <- Minus
3R 8782442..8784256 1..1815 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:24 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4606669..4608106 1816..3253 100 <- Minus
arm_3R 4608164..4609978 1..1815 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:12 Download gff for GH05455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8521778..8523215 1816..3253 100 <- Minus
3R 8523273..8525087 1..1815 100   Minus

GH05455.pep Sequence

Translation from 825 to 3215

> GH05455.pep
MGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEE
REIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQ
AKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHR
DLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIF
AKKVQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENK
IRQMENQMRDSEERARCLEDELRTKDEQCQLLERKLGVMPEGYSLADELH
DSPAKRAKKDEVPSLQAASQGLGVALLDLEGRDFGLPLHKDFQAIACSVK
QLADTLLSQSPSEVSLQSKEPAKPAGSEPEGSSWATVQDASSEKIPETGL
STVTSLECQGNQETQDNQVIQENPGSLESQVDSEYLESQERNLVSSKKSS
YVSVVTSSCRSIVRELAGGSAQKSELHLGESDSRANPQIIRPTDEQEKKI
TAVPYSMRQMFNEVCSVDQQHEPELKKKSKKRAKNKKEKHPRPNSHQRKI
QRFLFRHIYRPRTLNRTLGFPLQKSLSCSSFHSLLSVHSVHSARSGISLH
SLHAEVVNLNWESLASVSFVQTDEVKTLEEEVQVTTQCNEKEMQVQPETI
ECGTQVDVGVEQRLLLMPLRTRCFVDLIQGAVDGYLDVAAFRTRLLHLWE
GGEDFREHLEFLQDMWIEKSTQKTQESYEGFVAALDCVHNLKLALKPASS
ALLQQIEQRIHTRLLLFHNHKAESEFCCTVYIPVERSNSTLFRAKK*

GH05455.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16831-PA 1277 GF16831-PA 497..1272 1..792 2262 58.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17419-PA 1298 GG17419-PA 511..1298 1..796 3340 81.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19335-PA 1396 GH19335-PA 519..927 1..394 1110 57 Plus
Dgri\GH19335-PA 1396 GH19335-PA 1163..1391 575..792 464 43.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pif1A-PI 796 CG42599-PI 1..796 1..796 4054 100 Plus
Pif1A-PJ 1264 CG42599-PJ 898..1260 1..363 1832 100 Plus
Pif1A-PA 879 CG33719-PA 513..875 1..363 1832 100 Plus
Pif1A-PH 1264 CG42599-PH 898..1260 1..363 1832 100 Plus
Pif1A-PG 1226 CG42599-PG 860..1222 1..363 1832 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23945-PA 1266 GI23945-PA 561..1262 46..792 1410 45.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12124-PA 1177 GL12124-PA 447..803 1..370 1078 60.7 Plus
Dper\GL12124-PA 1177 GL12124-PA 934..1137 550..772 389 40 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30020-PA 1605 GA30020-PA 871..1222 1..365 1086 61.8 Plus
Dpse\GA30020-PC 1570 GA30020-PC 836..1187 1..365 1085 61.8 Plus
Dpse\GA30020-PD 1182 GA30020-PD 448..799 1..365 1083 61.8 Plus
Dpse\GA30020-PB 1215 GA30020-PB 481..832 1..365 1083 61.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26309-PA 762 GM26309-PA 1..762 32..796 3638 93.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20841-PA 731 GD20841-PA 521..723 1..203 1014 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23734-PA 1317 GJ23734-PA 524..881 1..361 1085 61.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11260-PA 1252 GK11260-PA 531..1247 45..792 1659 49.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24821-PA 1304 GE24821-PA 507..1304 1..796 3351 83.4 Plus

GH05455.hyp Sequence

Translation from 825 to 3215

> GH05455.hyp
MGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEE
REIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQ
AKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHR
DLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIF
AKKVQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENK
IRQMENQMRDSEERARCLEDELRTKDEQCQLLERKLGVMPEGYSLADELH
DSPAKRAKKDEVPSLQAASQGLGVALLDLEGRDFGLPLHKDFQAIACSVK
QLADTLLSQSPSEVSLQSKEPAKPAGSEPEGSSWATVQDASSEKIPETGL
STVTSLECQGNQETQDNQVIQENPGSLESQVDSEYLESQERNLVSSKKSS
YVSVVTSSCRSIVRELAGGSAQKSELHLGESDSRANPQIIRPTDEQEKKI
TAVPYSMRQMFNEVCSVDQQHEPELKKKSKKRAKNKKEKHPRPNSHQRKI
QRFLFRHIYRPRTLNRTLGFPLQKSLSCSSFHSLLSVHSVHSARSGISLH
SLHAEVVNLNWESLASVSFVQTDEVKTLEEEVQVTTQCNEKEMQVQPETI
ECGTQVDVGVEQRLLLMPLRTRCFVDLIQGAVDGYLDVAAFRTRLLHLWE
GGEDFREHLEFLQDMWIEKSTQKTQESYEGFVAALDCVHNLKLALKPASS
ALLQQIEQRIHTRLLLFHNHKAESEFCCTVYIPVERSNSTLFRAKK*

GH05455.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pif1A-PI 796 CG42599-PI 1..796 1..796 4054 100 Plus
Pif1A-PA 879 CG33719-PA 513..875 1..363 1832 100 Plus
Pif1A-PG 1226 CG42599-PG 860..1222 1..363 1832 100 Plus
Pif1A-PH 1264 CG42599-PH 898..1260 1..363 1832 100 Plus