Clone GH05505 Report

Search the DGRC for GH05505

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:55
Well:5
Vector:pOT2
Associated Gene/TranscriptCG42511-RA
Protein status:GH05505.pep: gold
Preliminary Size:3120
Sequenced Size:2839

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8135 2001-01-01 Release 2 assignment
CG8135 2002-06-07 Blastp of sequenced clone
CG8135 2003-01-01 Sim4 clustering to Release 3
CG8135 2008-04-29 Release 5.5 accounting
CG8135 2008-08-15 Release 5.9 accounting
CG8135 2008-12-18 5.12 accounting

Clone Sequence Records

GH05505.complete Sequence

2839 bp (2839 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119474.1

> GH05505.complete
CCACGCACACGTTCACACTTTTTGATAAAGTCGATTGATTTGATTGACCG
AGAAAAAAAAACAAATAAACACAACGAAGGTGAACTGGTACCGGCGTAGT
GAAGATACCACCAACGCCAGCTCCCAACACATCCCGGCCACGCCCCCCGA
CCGCCCGCGGAGCTCCAAAGGATGTCCTCAGTGGAGGCCGAGGTGCTGCA
GAAAATCGATCTGATTGAGCCCACAACCGGAAAATTGTTTTTCGAGCACA
AAACGGAGCTGCTTTTCTGCCGGCCACATCTGATGCCGCTAAAGACGCAG
GCGCTGGAACGCCTGGAGGAAATGCATCGGGACACCGCTCGCCAATTGCA
GAAGAAGCGCCAGCAGAAGAAGAAGTCCACGGAGCCCACAGGCTCGCTAT
GAACCAGTCCTTAATCGCAGAAATACATTTGTTATAAGCACATACACCCA
CACGCACGCACCACAAATACACAGAATCACAGCAAAGCACAAGAACTGAG
TACACCCGTACCAGGATCGGGATCGGGATAAGCACTAGTCACAATGGCGT
ACCTACTAAGCTTTGGCATCGTGGCCGCCCTATTCCTGGCCAGCATCTCG
CTGTACCGTTACGGAAACATACCACGTCAGCACATCCTGGTCACCCTGTC
CGTGCTGACCGCCTGGTGTTTCTCCTTTCTAATTGTATTCACCATTCCGC
TGGACGTGACATCGACGCTTTACCGGCAGTGCGTGGAGGAGCACCGACCG
ACCCCAGCCCCAAATGTGACCAACACGTCGAGCGCCACGGTGGGTCCGCC
GCCTCAGTGCCAGGAACCGTGGGGCATGGTGCCCGCCTCCGTGTTCCCAA
ACCTCTGGCGCATTATTTACTGGAGCTCACAGTTCCTCACCTGGTTGATT
ATGCCGCTGATGCAGTCGTACCTTAAGGCGGGCGACTTCACCGTCAAGGG
AAAACTTAAATCGGCACTGATAGAGAATGCCATCTACTACGGTTCCTACC
TGTTCATCTGTGGCGTACTACTCATCTATATTGCCGTCAAAGGAGAGTCT
CTGGATTGGCAAAAGCTCAAGGCAATTGCCTCGTCCGCATCGAACACATG
GGGATTGTTTCTGCTCATCCTGTTACTGGGATATGCTCTGGTGGAGGTAC
CTCGATCGTTGTGGAACAACGCCAAGCCGGGATTTGCACTGCAATATGCC
TACTTCAAGGCAGCCAAATTGAGCACTGAGAAGGCCGAGGCTGAGGAGCA
TGTGGATGATATCCTTGAGTCGCTGCAAGGCCTTAGCCGCGTCATACCCA
ACAATCACGAGTTGCGCCCCTGCCTGGAGACCATTCTGCGCAAGGTTCCC
ATTGAGCTGCAAGAGCGAGCGAGTCGAAACTTTGCGCGCACTGGAGGCAG
CGGCATGGGTGCCACGAGTTCCACTATCTTGCCTTCGGAAAAGGCGCTGG
TTCGCATTCATAAGCAAGTAATCAAATCGCTGCAAACATTGCAGCGCACC
GAAGCGCTATGGAGCGTGCAGGTGCAGACAGTGCTGCATCTGGAGGATGT
GGCCAAGAATATACACTCTTCGGACCGGCGCTTCAAATCTGAGTTTCCGC
GCCAGCGCACGCAGCTGGAGAGGATCTGCTACAGCGCCTCGCTGCAGTGG
TACTGGGAGTGCCTGCTAAAGGCTCCGTTCCTCAAGACCATGTGCGTTCT
GACCGCCACCATGTCGGCCATTGTGGTGTGGAGCGAGCTTACCTTCTTCA
GTCGCCACCCTGTGCTTTCCATATTCGCCAACGTTATCTACGTGGCCAAG
GAGAGCTACGACTTCTTTACTATTGAAGTCTTCTCTATGGTTGTTCTATG
CTACTTCTTCTACTGCACTTACTCCACGATCTTGAGGATACGCTTCCTTA
ATCTCTACTACCTGGCACCGCATCACCAGACCAACGAGCACAGTCTGATC
TTCAGCGGCATGCTGCTGTGCCGTCTGACACCACCCATGTGCCTCAACTT
CCTGGGTCTCATCCATATGGACACACACATTATTCCCAACCGCATTATGG
AGACGGTGTACACGCAGATCATGGGCCACATGGATGTTATTGGCATCATC
TCGAACGGCTTCAATATCTACTTCCCAATGTGTATGCTGGCCTTCTGTCT
GGCCACTTGGTTTAGCCTCGGCAGTCGGGCACTGAATGCTCTCGGCTTCC
AGCAGTTCCTGCAAAACGAAACTATTGCTACCGAACTGGTGCAGGAGGGA
AAGGATCTTATAGCGCGGGAAAAGCGCCGCCGCCAGCGTGCCGAGGAGGC
GATGGCCAGACGCCGTGACTTCAACCGAACCGATCAGGTTCTGGGCAGCG
ATTACTTGAGCAAATACCGGAGTGGTGGACCCGGTGGACTAACCAGTAGT
CGCACGCCCGCCGACGGGCTGCTGCGCGATGGCGACGGCAGCTTTGACTA
TGCGGCAGTGGCTTCTTCCTCTGCACTGGGCGTACCGCGATCCCTGTCGG
AGGAGATCAACGACCGTTTCGGTGTGAGCACTCAGGTGCAGGTGGGATTC
CGAGACCCCGACTACGAGGCGGAGACAGATGGTCGAATTGTCGGCCCACC
ACCCCGAGGACTCTTCGACGATGTCTAGACTTTGGATATGGATAACTCTT
TATTTCAATTCGTTACCGAGTATCTCAATATTTCGCTCGCGCTTAAGTAT
TTCCCGATGCCACTGCTGCTGCTGCTGTTCCTTTACACCCATGTAGACCA
TTCAGTTGAATAAACCACTAAAGAGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH05505.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42511-RA 2777 CG42511-RA 2..2777 1..2776 13865 99.9 Plus
CG8135-RA 2777 CG8135-RA 2..2777 1..2776 13865 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5231568..5232894 714..2040 6605 99.8 Plus
chr3R 27901430 chr3R 5232945..5233690 2031..2776 3685 99.6 Plus
chr3R 27901430 chr3R 5230209..5230922 1..714 3555 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:33:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9405735..9407061 714..2040 6620 99.9 Plus
3R 32079331 3R 9407112..9407858 2031..2777 3690 99.6 Plus
3R 32079331 3R 9404376..9405089 1..714 3570 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9146566..9147892 714..2040 6620 99.9 Plus
3R 31820162 3R 9147943..9148689 2031..2777 3690 99.5 Plus
3R 31820162 3R 9145207..9145920 1..714 3570 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:15:00 has no hits.

GH05505.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:16:03 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5230209..5230922 1..714 99 -> Plus
chr3R 5231569..5232894 715..2040 99 -> Plus
chr3R 5232955..5233690 2041..2776 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:18:13 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 1..2085 544..2628 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:27:40 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 1..2085 544..2628 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:49:26 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 1..2085 544..2628 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:12 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 1..2085 544..2628 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:40 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 1..2085 544..2628 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:56:25 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 2..2777 1..2776 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:27:40 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG42511-RA 2..2777 1..2776 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:49:26 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 1..2767 10..2776 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:12 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 2..2777 1..2776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:40 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
CG8135-RA 1..2767 10..2776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:03 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9404376..9405089 1..714 100 -> Plus
3R 9405736..9407061 715..2040 99 -> Plus
3R 9407122..9407857 2041..2776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:03 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9404376..9405089 1..714 100 -> Plus
3R 9405736..9407061 715..2040 99 -> Plus
3R 9407122..9407857 2041..2776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:03 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9404376..9405089 1..714 100 -> Plus
3R 9405736..9407061 715..2040 99 -> Plus
3R 9407122..9407857 2041..2776 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:49:26 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5230098..5230811 1..714 100 -> Plus
arm_3R 5231458..5232783 715..2040 99 -> Plus
arm_3R 5232844..5233579 2041..2776 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:51:32 Download gff for GH05505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9145207..9145920 1..714 100 -> Plus
3R 9146567..9147892 715..2040 99 -> Plus
3R 9147953..9148688 2041..2776 100   Plus

GH05505.pep Sequence

Translation from 171 to 401

> GH05505.pep
MSSVEAEVLQKIDLIEPTTGKLFFEHKTELLFCRPHLMPLKTQALERLEE
MHRDTARQLQKKRQQKKKSTEPTGSL*

GH05505.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17211-PA 83 GF17211-PA 1..82 1..75 310 78 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16754-PA 75 GG16754-PA 1..75 1..76 369 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18431-PA 86 GH18431-PA 14..72 8..66 228 72.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
BBIP1-PA 76 CG42511-PA 1..76 1..76 386 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24008-PA 94 GI24008-PA 1..70 1..66 242 68.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13820-PA 78 GL13820-PA 1..75 1..72 296 81.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26809-PA 78 GA26809-PA 1..75 1..72 296 81.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23970-PA 76 GM23970-PA 1..76 1..76 385 100 Plus
Dsec\GM23802-PA 76 GM23802-PA 1..76 1..76 385 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18613-PA 76 GD18613-PA 1..76 1..76 373 97.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10954-PA 85 GK10954-PA 1..74 1..70 291 78.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25948-PA 75 GE25948-PA 1..75 1..76 365 97.4 Plus

GH05505.hyp Sequence

Translation from 543 to 2627

> GH05505.hyp
MAYLLSFGIVAALFLASISLYRYGNIPRQHILVTLSVLTAWCFSFLIVFT
IPLDVTSTLYRQCVEEHRPTPAPNVTNTSSATVGPPPQCQEPWGMVPASV
FPNLWRIIYWSSQFLTWLIMPLMQSYLKAGDFTVKGKLKSALIENAIYYG
SYLFICGVLLIYIAVKGESLDWQKLKAIASSASNTWGLFLLILLLGYALV
EVPRSLWNNAKPGFALQYAYFKAAKLSTEKAEAEEHVDDILESLQGLSRV
IPNNHELRPCLETILRKVPIELQERASRNFARTGGSGMGATSSTILPSEK
ALVRIHKQVIKSLQTLQRTEALWSVQVQTVLHLEDVAKNIHSSDRRFKSE
FPRQRTQLERICYSASLQWYWECLLKAPFLKTMCVLTATMSAMVVWSELT
FFSRHPVLSIFANVIYVAKESYDFFTIEVFSMVVLCYFFYCTYSTILRIR
FLNLYYLAPHHQTNEHSLIFSGMLLCRLTPPMCLNFLGLIHMDTHIIPNR
IMETVYTQIMGHMDVIGIISNGFNIYFPMCMLAFCLATWFSLGSRALNAL
GFQQFLQNETIATELVQEGKDLIAREKRRRQRAEEAMARRRDFNRTDQVL
GSDYLSKYRSGGPGGLTSSRTPADGLLRDGDGSFDYAAVASSSALGVPRS
LSEEINDRFGVSTQVQVGFRDPDYEAETDGRIVGPPPRGLFDDV*

GH05505.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8135-PA 694 CG8135-PA 1..694 1..694 3612 100 Plus