GH05530.complete Sequence
424 bp (424 high quality bases) assembled on 2002-05-18
GenBank Submission: AY118741
> GH05530.complete
ACACCTTTGAAAATAGTTTGTGTCTTACGTTTTCCGGTACCTATTTTGTT
GTTTCTAAGATCCTATTTCTGTAAATAGGCCAAATTCCACTTAGCTGCCC
TTTTAGAAGGAAATTAGGATACCCTGAACGCTTTTCCCCAAGACAAAATA
AAATCATCATGTGCTGCGGACCCTGTGGACCTCGCTGCTGCGATCCGTGC
GGCGGATGCTACAACTGCTGCGTGGAACTCTGCTGTGTACCCTGCACCCC
AGCCTACATCCAGTGCTCATTTATGCCCTGCGGACCAAGAGGCTGTTGCT
GAAGTGGGGATGTGCCAGGTGCCGAAACACGTTCAACCATATTGTACCTG
AAACACTCGTAGATACCCAACATGTCCCAATAAACGAATTTTATAAATGT
TAAAAAAAAAAAAAAAAAAAAAAA
GH05530.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17567-RA | 613 | CG17567-RA | 192..594 | 1..403 | 2015 | 100 | Plus |
CG17567-RC | 424 | CG17567-RC | 18..424 | 1..403 | 1950 | 99 | Plus |
CG17567-RD | 411 | CG17567-RD | 103..411 | 95..403 | 1545 | 100 | Plus |
CG17567-RD | 411 | CG17567-RD | 18..102 | 1..85 | 425 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 19181678..19181923 | 401..156 | 1215 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 19182097..19182181 | 85..1 | 425 | 100 | Minus |
chr2L | 23010047 | chr2L | 19181977..19182050 | 155..82 | 355 | 98.6 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:33:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19183091..19183338 | 403..156 | 1240 | 100 | Minus |
2L | 23513712 | 2L | 19183512..19183596 | 85..1 | 425 | 100 | Minus |
2L | 23513712 | 2L | 19183392..19183465 | 155..82 | 355 | 98.6 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19183091..19183338 | 403..156 | 1240 | 100 | Minus |
2L | 23513712 | 2L | 19183512..19183596 | 85..1 | 425 | 100 | Minus |
2L | 23513712 | 2L | 19183392..19183465 | 155..82 | 355 | 98.6 | Minus |
Blast to na_te.dros performed on 2019-03-15 15:26:08 has no hits.
GH05530.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:26:51 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 19181678..19181923 | 156..401 | 99 | <- | Minus |
chr2L | 19181977..19182046 | 86..155 | 100 | <- | Minus |
chr2L | 19182097..19182181 | 1..85 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:18:15 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RC | 1..196 | 206..401 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:14:41 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RC | 1..196 | 206..401 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:18:53 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RC | 1..196 | 206..401 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:06:57 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46059-RA | 1..144 | 159..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:46:23 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RA | 18..418 | 1..401 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:14:41 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RA | 18..418 | 1..401 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:18:53 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RA | 18..418 | 1..401 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:06:57 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46059-RA | 5..405 | 1..401 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:51 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19183392..19183461 | 86..155 | 100 | <- | Minus |
2L | 19183512..19183596 | 1..85 | 100 | | Minus |
2L | 19183093..19183338 | 156..401 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:51 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19183392..19183461 | 86..155 | 100 | <- | Minus |
2L | 19183512..19183596 | 1..85 | 100 | | Minus |
2L | 19183093..19183338 | 156..401 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:51 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19183392..19183461 | 86..155 | 100 | <- | Minus |
2L | 19183512..19183596 | 1..85 | 100 | | Minus |
2L | 19183093..19183338 | 156..401 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:29:18 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183093..19183338 | 156..401 | 100 | <- | Minus |
arm_2L | 19183392..19183461 | 86..155 | 100 | <- | Minus |
arm_2L | 19183512..19183596 | 1..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:29:18 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183093..19183338 | 156..401 | 100 | <- | Minus |
arm_2L | 19183392..19183461 | 86..155 | 100 | <- | Minus |
arm_2L | 19183512..19183596 | 1..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:29:18 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183093..19183338 | 156..401 | 100 | <- | Minus |
arm_2L | 19183392..19183461 | 86..155 | 100 | <- | Minus |
arm_2L | 19183512..19183596 | 1..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:16:40 Download gff for
GH05530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19183093..19183338 | 156..401 | 100 | <- | Minus |
2L | 19183392..19183461 | 86..155 | 100 | <- | Minus |
2L | 19183512..19183596 | 1..85 | 100 | | Minus |
GH05530.hyp Sequence
Translation from 205 to 400
> GH05530.hyp
MLQLLRGTLLCTLHPSLHPVLIYALRTKRLLLKWGCARCRNTFNHIVPET
LVDTQHVPINEFYKC
Sequence GH05530.hyp has no blast hits.
GH05530.pep Sequence
Translation from 205 to 402
> GH05530.pep
MLQLLRGTLLCTLHPSLHPVLIYALRTKRLLLKWGCARCRNTFNHIVPET
LVDTQHVPINEFYKC*
GH05530.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM17023-PA | 65 | GM17023-PA | 1..65 | 1..65 | 286 | 87.7 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE12663-PA | 57 | GE12663-PA | 1..54 | 1..54 | 195 | 72.2 | Plus |