BDGP Sequence Production Resources |
Search the DGRC for GH05615
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 56 |
Well: | 15 |
Vector: | pOT2 |
Associated Gene/Transcript | to-RA |
Protein status: | GH05615.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1056 |
Gene | Date | Evidence |
---|---|---|
CG11853 | 2001-01-01 | Release 2 assignment |
CG11853 | 2002-06-12 | Blastp of sequenced clone |
CG11853 | 2003-01-01 | Sim4 clustering to Release 3 |
to | 2008-04-29 | Release 5.5 accounting |
to | 2008-08-15 | Release 5.9 accounting |
to | 2008-12-18 | 5.12 accounting |
1056 bp (1056 high quality bases) assembled on 2002-06-12
GenBank Submission: AY122096
> GH05615.complete ACGTGTTAGCATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCCTTTTGG TCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAGTATGGT GATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGAAAACTC GGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGTTGAAGG TGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTGGGCATA ACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCAAAGGAT CGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACGAAGTGA AAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATCCAGGGC AAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACATGACAAT GGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGGTGAAGA ATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATGAAGCCG GAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAAGGCGCT GGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCATTTACA AGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTACCTGGGC GTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTTTGCGGA TGAATCGTGAGTTAGCTCTTCAAAGTGGGCAGAGTCCACATAAAGATACT AGATCATGTTGTTTGCGTACTGACAGATCTAAGTTTTGAGGCTAGCAATC ATCATTAGGTTTAATGGAGTTCGTGTTTCGCGTTTGAAAGTGAGAACACA AGTAACTACTATTAAGCCATCTCAGCTAAATAATCTGTAAGTGTTGTGTG GCAATAAAAGTTACATATATGTAGTTAGCACATTGTAAATTATTTATAAG TGATACAAAGAATTCTGTAAAATACCATAAAAACATTTAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
to.d | 1291 | to.d | 39..1080 | 1..1042 | 5210 | 100 | Plus |
to-RA | 1291 | to-RA | 39..1080 | 1..1042 | 5210 | 100 | Plus |
to.a | 1179 | to.a | 203..1173 | 72..1042 | 4855 | 100 | Plus |
to.a | 1179 | to.a | 17..87 | 1..71 | 355 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 21063948..21064535 | 452..1038 | 2830 | 99.1 | Plus |
chr3R | 27901430 | chr3R | 21063447..21063688 | 72..313 | 1180 | 99.2 | Plus |
chr3R | 27901430 | chr3R | 21063755..21063898 | 313..456 | 705 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 21063261..21063331 | 1..71 | 355 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25240867..25241457 | 452..1042 | 2955 | 100 | Plus |
3R | 32079331 | 3R | 25240366..25240607 | 72..313 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 25240674..25240817 | 313..456 | 705 | 99.3 | Plus |
3R | 32079331 | 3R | 25240180..25240250 | 1..71 | 355 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24981698..24982288 | 452..1042 | 2955 | 100 | Plus |
3R | 31820162 | 3R | 24981197..24981438 | 72..313 | 1210 | 100 | Plus |
3R | 31820162 | 3R | 24981505..24981648 | 313..456 | 705 | 99.3 | Plus |
3R | 31820162 | 3R | 24981011..24981081 | 1..71 | 355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 21063261..21063331 | 1..71 | 100 | -> | Plus |
chr3R | 21063447..21063687 | 72..312 | 99 | -> | Plus |
chr3R | 21063755..21063894 | 313..452 | 100 | -> | Plus |
chr3R | 21063949..21064535 | 453..1038 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..750 | 11..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..750 | 11..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..750 | 11..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..750 | 11..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..750 | 11..760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..1038 | 1..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..1038 | 1..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..1038 | 1..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..1038 | 1..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
to-RA | 1..1038 | 1..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25240180..25240250 | 1..71 | 100 | -> | Plus |
3R | 25240366..25240606 | 72..312 | 100 | -> | Plus |
3R | 25240674..25240813 | 313..452 | 100 | -> | Plus |
3R | 25240868..25241453 | 453..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25240180..25240250 | 1..71 | 100 | -> | Plus |
3R | 25240366..25240606 | 72..312 | 100 | -> | Plus |
3R | 25240674..25240813 | 313..452 | 100 | -> | Plus |
3R | 25240868..25241453 | 453..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25240180..25240250 | 1..71 | 100 | -> | Plus |
3R | 25240366..25240606 | 72..312 | 100 | -> | Plus |
3R | 25240674..25240813 | 313..452 | 100 | -> | Plus |
3R | 25240868..25241453 | 453..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 21065902..21065972 | 1..71 | 100 | -> | Plus |
arm_3R | 21066088..21066328 | 72..312 | 100 | -> | Plus |
arm_3R | 21066396..21066535 | 313..452 | 100 | -> | Plus |
arm_3R | 21066590..21067175 | 453..1038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24981197..24981437 | 72..312 | 100 | -> | Plus |
3R | 24981505..24981644 | 313..452 | 100 | -> | Plus |
3R | 24981699..24982284 | 453..1038 | 100 | Plus | |
3R | 24981011..24981081 | 1..71 | 100 | -> | Plus |
Translation from 1 to 759
> GH05615.hyp RVSMFAIAFAVVLCLLVSVDAKFPEDPKPCKYGDGECIMKLCNTLFSENS AEGDPGLNLMQLDPLKVDRMVISQGESSSPVGITLTFTDNLLYGIKDQRI VKVKGFGRDLTAKHEVKIVTKTFSLVGPYNIQGKVLILPISGTGQSNMTM VNVRAIVSFSGKPLVKNGETYLDVTDLKITMKPESSHYHFSNLFNGDKAL GDNMNVFLNENSEAIYKETAKAIDRSFGKLYLGVVKGVFSKLPYAKFFAD ES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
to-PB | 249 | CG11853-PB | 1..249 | 4..252 | 1279 | 100 | Plus |
to-PA | 249 | CG11853-PA | 1..249 | 4..252 | 1279 | 100 | Plus |
CG11852-PA | 250 | CG11852-PA | 3..249 | 4..250 | 341 | 30.6 | Plus |
CG11854-PB | 250 | CG11854-PB | 23..248 | 23..248 | 316 | 31.7 | Plus |
CG2650-PA | 260 | CG2650-PA | 7..260 | 3..251 | 298 | 29.8 | Plus |
Translation from 10 to 759
> GH05615.pep MFAIAFAVVLCLLVSVDAKFPEDPKPCKYGDGECIMKLCNTLFSENSAEG DPGLNLMQLDPLKVDRMVISQGESSSPVGITLTFTDNLLYGIKDQRIVKV KGFGRDLTAKHEVKIVTKTFSLVGPYNIQGKVLILPISGTGQSNMTMVNV RAIVSFSGKPLVKNGETYLDVTDLKITMKPESSHYHFSNLFNGDKALGDN MNVFLNENSEAIYKETAKAIDRSFGKLYLGVVKGVFSKLPYAKFFADES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17553-PA | 248 | GF17553-PA | 1..248 | 1..248 | 919 | 68.1 | Plus |
Dana\GF17552-PA | 250 | GF17552-PA | 3..250 | 1..248 | 327 | 30.5 | Plus |
Dana\GF17554-PA | 254 | GF17554-PA | 24..250 | 19..245 | 326 | 32.5 | Plus |
Dana\GF21371-PA | 263 | GF21371-PA | 25..263 | 13..248 | 285 | 27.9 | Plus |
Dana\GF20756-PA | 251 | GF20756-PA | 19..249 | 12..245 | 262 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11379-PA | 248 | GG11379-PA | 1..248 | 1..248 | 1222 | 93.5 | Plus |
Dere\GG11378-PA | 250 | GG11378-PA | 3..249 | 1..247 | 346 | 31.5 | Plus |
Dere\GG11380-PA | 250 | GG11380-PA | 21..249 | 18..246 | 338 | 33.2 | Plus |
Dere\GG11299-PA | 251 | GG11299-PA | 8..249 | 1..245 | 278 | 28.6 | Plus |
Dere\GG18615-PA | 260 | GG18615-PA | 8..260 | 2..248 | 258 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17381-PA | 246 | GH17381-PA | 1..246 | 1..247 | 735 | 55.5 | Plus |
Dgri\GH14735-PA | 237 | GH14735-PA | 1..237 | 1..247 | 608 | 45.3 | Plus |
Dgri\GH17380-PA | 248 | GH17380-PA | 18..248 | 18..248 | 301 | 29.7 | Plus |
Dgri\GH18827-PA | 250 | GH18827-PA | 6..248 | 7..245 | 283 | 29.3 | Plus |
Dgri\GH17382-PA | 259 | GH17382-PA | 23..252 | 18..247 | 280 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
to-PB | 249 | CG11853-PB | 1..249 | 1..249 | 1279 | 100 | Plus |
to-PA | 249 | CG11853-PA | 1..249 | 1..249 | 1279 | 100 | Plus |
CG11852-PA | 250 | CG11852-PA | 3..249 | 1..247 | 341 | 30.6 | Plus |
CG11854-PB | 250 | CG11854-PB | 23..248 | 20..245 | 316 | 31.7 | Plus |
CG2650-PA | 260 | CG2650-PA | 8..260 | 1..248 | 294 | 29.5 | Plus |
CG13618-PA | 252 | CG13618-PA | 9..250 | 1..245 | 281 | 29 | Plus |
CG14457-PB | 271 | CG14457-PB | 16..255 | 11..248 | 225 | 26.5 | Plus |
CG10407-PB | 259 | CG10407-PB | 65..253 | 49..241 | 224 | 27.5 | Plus |
CG10407-PA | 259 | CG10407-PA | 65..253 | 49..241 | 224 | 27.5 | Plus |
CG14457-PC | 270 | CG14457-PC | 16..254 | 11..248 | 222 | 26.6 | Plus |
CG17279-PD | 245 | CG17279-PD | 1..245 | 1..247 | 215 | 26.1 | Plus |
CG10407-PC | 263 | CG10407-PC | 65..257 | 49..241 | 210 | 26.9 | Plus |
CG10264-PA | 270 | CG10264-PA | 35..264 | 16..240 | 195 | 24.6 | Plus |
CG7079-PB | 255 | CG7079-PB | 21..248 | 19..245 | 181 | 23.5 | Plus |
CG7079-PA | 255 | CG7079-PA | 21..248 | 19..245 | 181 | 23.5 | Plus |
CG1124-PA | 246 | CG1124-PA | 4..246 | 3..247 | 179 | 24.7 | Plus |
CG14661-PB | 246 | CG14661-PB | 6..244 | 4..245 | 177 | 23.7 | Plus |
CG14661-PA | 246 | CG14661-PA | 6..244 | 4..245 | 177 | 23.7 | Plus |
CG14457-PA | 144 | CG14457-PA | 3..128 | 122..248 | 175 | 30.7 | Plus |
CG31189-PB | 258 | CG31189-PB | 13..248 | 11..245 | 174 | 22.8 | Plus |
CG31207-PA | 258 | CG31207-PA | 5..247 | 4..245 | 169 | 22 | Plus |
CG17189-PC | 271 | CG17189-PC | 69..255 | 59..248 | 166 | 23.6 | Plus |
CG17189-PB | 271 | CG17189-PB | 69..255 | 59..248 | 166 | 23.6 | Plus |
CG14259-PA | 289 | CG14259-PA | 86..271 | 60..248 | 156 | 24.2 | Plus |
CG14258-PA | 258 | CG14258-PA | 10..256 | 7..247 | 154 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23925-PA | 241 | GI23925-PA | 1..241 | 1..247 | 674 | 51.8 | Plus |
Dmoj\GI23924-PA | 255 | GI23924-PA | 2..255 | 1..248 | 352 | 31.4 | Plus |
Dmoj\GI23926-PA | 238 | GI23926-PA | 8..237 | 18..247 | 327 | 31.8 | Plus |
Dmoj\GI10085-PA | 254 | GI10085-PA | 16..252 | 4..245 | 280 | 29.3 | Plus |
Dmoj\GI16254-PA | 228 | GI16254-PA | 2..228 | 25..248 | 245 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11988-PA | 251 | GL11988-PA | 1..248 | 1..248 | 796 | 57.7 | Plus |
Dper\GL11987-PA | 250 | GL11987-PA | 8..249 | 5..247 | 335 | 31.1 | Plus |
Dper\GL11989-PA | 256 | GL11989-PA | 27..254 | 18..245 | 330 | 31.4 | Plus |
Dper\GL21869-PA | 240 | GL21869-PA | 46..238 | 49..245 | 267 | 30.7 | Plus |
Dper\GL18241-PA | 270 | GL18241-PA | 1..258 | 4..249 | 256 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11237-PA | 251 | GA11237-PA | 1..248 | 1..248 | 796 | 57.7 | Plus |
Dpse\GA11236-PA | 250 | GA11236-PA | 8..249 | 5..247 | 335 | 31.1 | Plus |
Dpse\GA11238-PA | 256 | GA11238-PA | 27..254 | 18..245 | 329 | 31.4 | Plus |
Dpse\GA12411-PA | 253 | GA12411-PA | 10..251 | 1..245 | 274 | 28.6 | Plus |
Dpse\GA15409-PA | 268 | GA15409-PA | 1..256 | 4..249 | 269 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17822-PA | 249 | GM17822-PA | 1..249 | 1..249 | 1305 | 99.6 | Plus |
Dsec\GM17820-PA | 250 | GM17820-PA | 3..249 | 1..247 | 334 | 29.8 | Plus |
Dsec\GM17823-PA | 246 | GM17823-PA | 21..244 | 18..245 | 305 | 31.4 | Plus |
Dsec\GM18865-PA | 260 | GM18865-PA | 8..260 | 1..248 | 291 | 29.1 | Plus |
Dsec\GM26607-PA | 119 | GM26607-PA | 1..117 | 128..245 | 226 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21190-PA | 241 | GD21190-PA | 1..241 | 1..249 | 1222 | 95.2 | Plus |
Dsim\GD21189-PA | 250 | GD21189-PA | 3..249 | 1..247 | 337 | 30.2 | Plus |
Dsim\GD21191-PA | 250 | GD21191-PA | 21..248 | 18..245 | 328 | 32.9 | Plus |
Dsim\GD24605-PA | 260 | GD24605-PA | 8..260 | 1..248 | 287 | 28.3 | Plus |
Dsim\GD15043-PA | 271 | GD15043-PA | 6..255 | 1..248 | 229 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24018-PA | 246 | GJ24018-PA | 1..246 | 1..247 | 747 | 55.5 | Plus |
Dvir\GJ24019-PA | 245 | GJ24019-PA | 1..245 | 1..247 | 667 | 51.6 | Plus |
Dvir\GJ24020-PA | 255 | GJ24020-PA | 27..254 | 20..247 | 343 | 31.2 | Plus |
Dvir\GJ24016-PA | 251 | GJ24016-PA | 13..251 | 10..248 | 324 | 30.8 | Plus |
Dvir\GJ23820-PA | 254 | GJ23820-PA | 15..252 | 3..245 | 288 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13451-PA | 244 | GK13451-PA | 11..242 | 8..240 | 527 | 49.4 | Plus |
Dwil\GK13452-PA | 254 | GK13452-PA | 6..253 | 3..247 | 362 | 32.9 | Plus |
Dwil\GK13450-PA | 250 | GK13450-PA | 8..249 | 5..247 | 338 | 31.6 | Plus |
Dwil\GK19974-PA | 256 | GK19974-PA | 12..256 | 8..247 | 240 | 27.6 | Plus |
Dwil\GK16767-PA | 272 | GK16767-PA | 7..256 | 2..247 | 231 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\to-PA | 248 | GE23576-PA | 1..248 | 1..248 | 1239 | 94.8 | Plus |
Dyak\GE23575-PA | 251 | GE23575-PA | 4..250 | 1..247 | 343 | 30.2 | Plus |
Dyak\GE23577-PA | 250 | GE23577-PA | 21..248 | 18..245 | 335 | 32.9 | Plus |
Dyak\GE23494-PA | 251 | GE23494-PA | 8..249 | 1..245 | 277 | 28.6 | Plus |
Dyak\GE16930-PA | 260 | GE16930-PA | 29..260 | 20..248 | 254 | 27.5 | Plus |