Clone GH05617 Report

Search the DGRC for GH05617

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:56
Well:17
Vector:pOT2
Associated Gene/TranscriptCG5783-RA
Protein status:GH05617.pep: gold
Preliminary Size:1079
Sequenced Size:971

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5783 2002-01-01 Sim4 clustering to Release 2
CG5783 2003-01-01 Sim4 clustering to Release 3
CG5783 2005-01-26 Blastp of sequenced clone
CG5783 2008-04-29 Release 5.5 accounting
CG5783 2008-08-15 Release 5.9 accounting
CG5783 2008-12-18 5.12 accounting

Clone Sequence Records

GH05617.complete Sequence

971 bp (971 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021439

> GH05617.complete
CGCTCGAAGGGGAAGATTGTTTCGCTCGACCAATATGGGTACTCGATTAG
AAGTTATTGGGCTGAAAGATATCCAGGAGTTCCAACAGCTCTACAAGCAA
AACTGGCCAAAATATTGCCAGGAATACTACTGCCTTGATAACTTTGTGGA
ATTTCTGAAAAAACAGCCCCATATGAGGAATATTAAGATGTACACATTGG
ATGCAAAACAAGCCAGAGATGAAGGTCTTTTTGTTATAGTGGATCGCTAT
CAACTATTCGTAGGTTGCTTGAACAACACGAACGGCCTTGTTGGAAAAGC
TCTGGATTTACTGGACTGGTCGTCGGGTTTGAAATGCAGTTCTATACCCT
CCAGACACATTGGTGCCCTGGATAGTCTGGTGGAGTCCAAAAAGTTGAAT
CTGGTGTACAGGGACTGCACGAATTTGTTTTTTATGAAAGCCAACGACGC
TCTCAAGCTGAAAGTCGAACCTCCATCTGGATTTGTTTTAAAGTCGTTGA
GTGTGGCAGATGCTCCATTGGTTAACGCAGAGTGGCCCAATCATCATGAG
GGATCTTTGTTCTTCGTAGAAAGGCAGATTCGCCTGTGCGTCAGTGTTGG
ATTGTACCAGGAAGACACCCAGGAACTAGTTGCCTGGTGCATTAGGTTAC
AAGGCGGCTACTTGGGCGCCCTGCAAGTCAAAGATACACACAAGCGACGC
GGATTTGGCAGTGTGGTGACTAGGGAAATAGCATACCGCCTAGCCGTCCA
AGGTCACGATGTAATGGCTCTCGTGGGCCCCTCGAATAAGCCGTCATCGG
AGATGTTCAGCAAACTGGGATTCCAGGTCATCGATCAATGCTACTGGCTA
AGGACGGAACCCACCGGTGGGCAGTTCACATGGCCCGAGGGCGAGTAATT
GGTGTTTAAATGTCTGTATTAAAATATTACGACTTTCGGTTGTATATGAA
TACAAAAAAAAAAAAAAAAAA

GH05617.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 1017 CG5783-RA 65..1017 1..953 4765 100 Plus
CG7200-RA 1652 CG7200-RA 1519..1652 955..822 670 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18155500..18155810 643..953 1555 100 Plus
chr2L 23010047 chr2L 18154691..18154932 1..242 1210 100 Plus
chr2L 23010047 chr2L 18154989..18155216 241..468 1140 100 Plus
chr2L 23010047 chr2L 18155273..18155451 469..647 895 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:33:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18156852..18157164 643..955 1565 100 Plus
2L 23513712 2L 18156043..18156284 1..242 1210 100 Plus
2L 23513712 2L 18156341..18156568 241..468 1140 100 Plus
2L 23513712 2L 18156625..18156803 469..647 895 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18156852..18157164 643..955 1565 100 Plus
2L 23513712 2L 18156043..18156284 1..242 1210 100 Plus
2L 23513712 2L 18156341..18156568 241..468 1140 100 Plus
2L 23513712 2L 18156625..18156803 469..647 895 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:27:12 has no hits.

GH05617.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:28:11 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18155503..18155810 646..953 100   Plus
chr2L 18154691..18154931 1..241 100 -> Plus
chr2L 18154990..18155216 242..468 100 -> Plus
chr2L 18155273..18155449 469..645 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:18:37 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..864 35..898 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:46:25 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..864 35..898 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:52:52 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..864 35..898 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:27:26 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..864 35..898 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:53 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..864 35..898 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:55:28 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..953 1..953 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:46:25 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..953 1..953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:52:52 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..953 1..953 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:27:27 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..953 1..953 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:53 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..953 1..953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:11 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18156043..18156283 1..241 100 -> Plus
2L 18156342..18156568 242..468 100 -> Plus
2L 18156625..18156801 469..645 100 -> Plus
2L 18156855..18157162 646..953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:11 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18156043..18156283 1..241 100 -> Plus
2L 18156342..18156568 242..468 100 -> Plus
2L 18156625..18156801 469..645 100 -> Plus
2L 18156855..18157162 646..953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:11 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18156043..18156283 1..241 100 -> Plus
2L 18156342..18156568 242..468 100 -> Plus
2L 18156625..18156801 469..645 100 -> Plus
2L 18156855..18157162 646..953 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:52:52 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18156043..18156283 1..241 100 -> Plus
arm_2L 18156342..18156568 242..468 100 -> Plus
arm_2L 18156625..18156801 469..645 100 -> Plus
arm_2L 18156855..18157162 646..953 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:00:28 Download gff for GH05617.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18156043..18156283 1..241 100 -> Plus
2L 18156342..18156568 242..468 100 -> Plus
2L 18156625..18156801 469..645 100 -> Plus
2L 18156855..18157162 646..953 100   Plus

GH05617.hyp Sequence

Translation from 1 to 897

> GH05617.hyp
ARRGRLFRSTNMGTRLEVIGLKDIQEFQQLYKQNWPKYCQEYYCLDNFVE
FLKKQPHMRNIKMYTLDAKQARDEGLFVIVDRYQLFVGCLNNTNGLVGKA
LDLLDWSSGLKCSSIPSRHIGALDSLVESKKLNLVYRDCTNLFFMKANDA
LKLKVEPPSGFVLKSLSVADAPLVNAEWPNHHEGSLFFVERQIRLCVSVG
LYQEDTQELVAWCIRLQGGYLGALQVKDTHKRRGFGSVVTREIAYRLAVQ
GHDVMALVGPSNKPSSEMFSKLGFQVIDQCYWLRTEPTGGQFTWPEGE*

GH05617.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-PA 287 CG5783-PA 1..287 12..298 1529 100 Plus
CG17681-PA 293 CG17681-PA 4..290 12..295 474 35.1 Plus
CG15155-PA 258 CG15155-PA 3..256 15..290 467 36.2 Plus
CG15155-PB 257 CG15155-PB 3..255 15..290 451 35.8 Plus
CG12560-PB 278 CG12560-PB 30..276 40..282 302 31.3 Plus

GH05617.pep Sequence

Translation from 34 to 897

> GH05617.pep
MGTRLEVIGLKDIQEFQQLYKQNWPKYCQEYYCLDNFVEFLKKQPHMRNI
KMYTLDAKQARDEGLFVIVDRYQLFVGCLNNTNGLVGKALDLLDWSSGLK
CSSIPSRHIGALDSLVESKKLNLVYRDCTNLFFMKANDALKLKVEPPSGF
VLKSLSVADAPLVNAEWPNHHEGSLFFVERQIRLCVSVGLYQEDTQELVA
WCIRLQGGYLGALQVKDTHKRRGFGSVVTREIAYRLAVQGHDVMALVGPS
NKPSSEMFSKLGFQVIDQCYWLRTEPTGGQFTWPEGE*

GH05617.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14492-PA 284 GF14492-PA 2..284 4..287 1174 74.6 Plus
Dana\GF14491-PA 271 GF14491-PA 2..271 3..287 587 40.4 Plus
Dana\GF14490-PA 293 GF14490-PA 9..293 6..287 505 36 Plus
Dana\GF15332-PA 277 GF15332-PA 30..275 29..271 313 31.9 Plus
Dana\GF19707-PA 212 GF19707-PA 52..208 115..271 189 32.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21112-PA 287 GG21112-PA 1..287 1..287 1406 88.2 Plus
Dere\GG21109-PA 293 GG21109-PA 4..293 1..287 477 35.7 Plus
Dere\GG21111-PA 257 GG21111-PA 3..256 4..279 449 32.7 Plus
Dere\GG23486-PA 281 GG23486-PA 9..280 18..275 308 28.4 Plus
Dere\GG23485-PA 101 GG23485-PA 5..89 186..271 178 39.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11205-PA 288 GH11205-PA 1..288 1..287 995 59.7 Plus
Dgri\GH11204-PA 290 GH11204-PA 4..290 2..287 731 47.7 Plus
Dgri\GH11202-PA 292 GH11202-PA 13..292 12..287 469 36.3 Plus
Dgri\GH11463-PA 280 GH11463-PA 36..277 31..271 347 35 Plus
Dgri\GH11464-PA 279 GH11464-PA 20..277 14..271 339 33.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-PA 287 CG5783-PA 1..287 1..287 1529 100 Plus
CG17681-PA 293 CG17681-PA 4..290 1..284 474 35.1 Plus
CG15155-PA 258 CG15155-PA 3..256 4..279 467 36.2 Plus
CG15155-PB 257 CG15155-PB 3..255 4..279 451 35.8 Plus
CG12560-PB 278 CG12560-PB 30..276 29..271 302 31.3 Plus
CG12560-PC 272 CG12560-PC 30..270 29..271 282 30.5 Plus
Glyat-PA 278 CG34010-PA 45..271 49..271 199 26.9 Plus
CG14615-PB 304 CG14615-PB 115..301 92..276 193 27.5 Plus
CG14615-PA 304 CG14615-PA 115..301 92..276 193 27.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18127-PA 287 GI18127-PA 1..287 1..287 992 61 Plus
Dmoj\GI18126-PA 285 GI18126-PA 2..285 4..287 774 47.9 Plus
Dmoj\GI18125-PA 292 GI18125-PA 8..292 7..287 492 38 Plus
Dmoj\GI16891-PA 265 GI16891-PA 21..263 18..271 312 33.5 Plus
Dmoj\GI16884-PA 213 GI16884-PA 92..204 155..268 192 36.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18697-PA 287 GL18697-PA 1..287 1..287 1209 73.9 Plus
Dper\GL18696-PA 286 GL18696-PA 4..286 5..287 689 48.6 Plus
Dper\GL18695-PA 293 GL18695-PA 9..293 6..287 515 38.5 Plus
Dper\GL18506-PA 274 GL18506-PA 29..272 31..271 305 33.2 Plus
Dper\GL18505-PA 138 GL18505-PA 7..126 150..271 206 36.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19124-PA 287 GA19124-PA 1..287 1..287 1191 72.8 Plus
Dpse\GA25759-PA 285 GA25759-PA 4..285 5..287 762 51.9 Plus
Dpse\GA14610-PA 293 GA14610-PA 9..293 6..287 511 38.1 Plus
Dpse\GA25663-PA 286 GA25663-PA 161..284 147..271 273 48 Plus
Dpse\GA13114-PA 305 GA13114-PA 118..304 93..277 193 28 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17269-PA 287 GM17269-PA 1..287 1..287 1480 94.8 Plus
Dsec\GM17267-PA 291 GM17267-PA 10..291 9..287 473 35.7 Plus
Dsec\GM17268-PA 258 GM17268-PA 4..256 5..279 453 34.9 Plus
Dsec\GM13211-PA 277 GM13211-PA 30..275 29..271 295 31.2 Plus
Dsec\GM13208-PA 161 GM13208-PA 39..154 155..271 190 34.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24134-PA 287 GD24134-PA 1..287 1..287 1476 94.8 Plus
Dsim\GD24132-PA 395 GD24132-PA 4..276 1..271 447 34.3 Plus
Dsim\GD24133-PA 250 GD24133-PA 4..248 5..279 444 34.9 Plus
Dsim\GD22448-PA 278 GD22448-PA 30..276 29..271 301 31.6 Plus
Dsim\GD22447-PA 103 GD22447-PA 12..96 186..271 177 39.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17752-PA 287 GJ17752-PA 1..287 1..287 1019 65.2 Plus
Dvir\GJ17751-PA 285 GJ17751-PA 2..285 4..287 803 50.4 Plus
Dvir\GJ17749-PA 292 GJ17749-PA 1..289 1..284 500 40.2 Plus
Dvir\GJ17205-PA 281 GJ17205-PA 126..279 119..271 303 42.6 Plus
Dvir\GJ17204-PA 352 GJ17204-PA 205..346 129..271 212 32.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15541-PA 288 GK15541-PA 1..288 1..287 1056 65.6 Plus
Dwil\GK15540-PA 235 GK15540-PA 4..232 5..254 528 42.1 Plus
Dwil\GK15539-PA 289 GK15539-PA 9..289 6..287 511 36.7 Plus
Dwil\GK15128-PA 339 GK15128-PA 212..335 147..271 250 40.8 Plus
Dwil\GK16280-PA 302 GK16280-PA 115..302 93..278 163 25.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13184-PA 287 GE13184-PA 1..287 1..287 1388 89.2 Plus
Dyak\GE13183-PA 279 GE13183-PA 3..277 4..279 582 40.6 Plus
Dyak\GE13182-PA 293 GE13182-PA 4..293 1..287 490 35.4 Plus
Dyak\GE11237-PA 278 GE11237-PA 30..276 29..271 289 29.2 Plus
Dyak\GE11235-PA 264 GE11235-PA 30..262 29..271 270 31.8 Plus