Clone GH05665 Report

Search the DGRC for GH05665

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:56
Well:65
Vector:pOT2
Associated Gene/TranscriptCG9356-RA
Protein status:GH05665.pep: gold
Preliminary Size:1300
Sequenced Size:1543

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9356 2001-01-01 Release 2 assignment
CG9356 2002-05-17 Blastp of sequenced clone
CG9356 2003-01-01 Sim4 clustering to Release 3
CG9356 2008-04-29 Release 5.5 accounting
CG9356 2008-08-15 Release 5.9 accounting
CG9356 2008-12-18 5.12 accounting

Clone Sequence Records

GH05665.complete Sequence

1543 bp (1543 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118742

> GH05665.complete
TTGGCAGCCCTTGGTCAATGTTTTTGTTTTGCTGGCACAGCAAAAGAAAT
TCTTAAATTAGGAAAATTTTATTTGGCCTGGCCAAGATTGCCCAGAAATG
GAAGCGAATGAAAGTGCGATGCCAGGAACGGACAAATCCCAAGCTTGTCG
CACCAGCGGCGATGGCATGGAGCAACCGGAAAACAGTGGAGCGGCCAAAA
CAGAGAGCGAAATCCCAGCGAGTGCTGATGTGGACAACAAGGTAAAGAGG
CCACAATTATCGCGAAAAGACAGCTCCGTTGTCCAGGAGGCCGTCATGGG
CAGGAAGACATCAACTAGTAGCGGCCACTCCTCAAATTTGCCCCTTCCTG
GCTTGCATACCCTGTACAGACGACCCGAGAACGTCACCCGGAGTTTGGCG
CCCGTTGTGCCCAAGGGGGAGCTGGTCCAGATGCGGCCAAGACTGGTCAC
CAGCGCGGACTCGCTGCCCGAACATAAGAAGACCAAGGCGCCCAAATTCG
TGCCCTACGAACCATATCCGGGTGCCGTGAATCCCATGATCTCTGAGCCA
ACGAATAAACACAAAATCCATCGGGATAAGAACAACCTGGACATTGCGGT
GCTGGTGGATCAGGTGTCCACGCTGCGCACACAGGAATTGGAGACTGAGA
CAACGGATATTAAAGAAACAGACACAGCCAGTAGCCATGAGGTAAACTCA
CTTAAAGAGGAGCTGGCCAAGATGCGCGATGAACGCAATTACTTTCAAGC
CCAGTATAAGTTCCAAACGCAGGTGAATAGCGAGCTGAAGAGCCTGCTGG
TGGCCTCCGTGGGCGAGGATCTGCAGACACGGGTTAATCTCCTCACCGAG
GACAAACTACAGCTGGCCAGAGCTCTATTGGACACTGCCAACAATTTGAC
CACCCACACCGAGCAGATTGAGTTCCTGGCCGGCCAGTGTGAGGTCTGGC
GGTCCAAATTCCTCGCCAGCAGCGTTATGGTTGAGGAGTTAGCCCGCTGG
AAAGCCGATCTCACGCAGAAGAATCAGCTATTGAACGAGTCAACGAAGCA
ACTGCTTCATGCCACCCATCAGATCCGCGAAATTCAGCTAGATATGCTTA
AGCAACTGAAGTTCCTGGCCAAGATTCGTTTCCTCAACCTGCCCGCCACC
GATGTAATCAGCCTAAGTGCCGAAAACCTTAACATTCTCCAACGCATGGT
CCTGCACACTGGCGTGGGCATTCCCGAGGAGACACTAAAGTTGTCCAGCG
CCAGCACAAGTCCACTTTGTGAGGCGGAGAAGTACGCGGTTAGGGCCTTG
GAATTCATTAGTCAGCCCCTGATGGCCACCGATGAAGCCATACGAGCACT
TTTCGACCAGGCCCAGCGACCCCACTACGTGCAATCACCTGCATCCGAAG
TAACTCCTGCCTGCGATAATCAGCAGCTAGATAAAATGCAATAGTTTTTC
GACAGAAATCAATGTTATATGTGTGTGTAGGCCTAATAAATTTTATATAC
AATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH05665.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1662 CG9356-RB 121..1627 1..1507 7535 100 Plus
CG9356-RA 1578 CG9356-RA 75..1578 1..1504 7520 100 Plus
CG8132-RA 1167 CG8132-RA 1110..1167 1507..1450 290 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5228675..5229969 1295..1 6430 99.8 Minus
chr3R 27901430 chr3R 5228397..5228607 1504..1294 1055 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:33:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9402842..9404136 1295..1 6475 100 Minus
3R 32079331 3R 9402561..9402774 1507..1294 1070 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9143673..9144967 1295..1 6475 100 Minus
3R 31820162 3R 9143392..9143605 1507..1294 1070 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:33:24 has no hits.

GH05665.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:34:36 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5228397..5228606 1295..1504 100 <- Minus
chr3R 5228676..5229969 1..1294 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:18:41 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 1..1347 98..1444 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:35 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 1..1347 98..1444 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:53:52 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 1..1347 98..1444 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:12 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 1..1347 98..1444 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:28 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 1..1347 98..1444 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:38 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 1..1504 1..1504 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:35 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 1..1504 1..1504 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:53:52 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 75..1578 1..1504 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:12 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 1..1504 1..1504 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:28 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 75..1578 1..1504 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:36 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9402564..9402773 1295..1504 100 <- Minus
3R 9402843..9404136 1..1294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:36 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9402564..9402773 1295..1504 100 <- Minus
3R 9402843..9404136 1..1294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:36 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9402564..9402773 1295..1504 100 <- Minus
3R 9402843..9404136 1..1294 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:53:52 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5228286..5228495 1295..1504 100 <- Minus
arm_3R 5228565..5229858 1..1294 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:29 Download gff for GH05665.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9143395..9143604 1295..1504 100 <- Minus
3R 9143674..9144967 1..1294 100   Minus

GH05665.pep Sequence

Translation from 97 to 1443

> GH05665.pep
MEANESAMPGTDKSQACRTSGDGMEQPENSGAAKTESEIPASADVDNKVK
RPQLSRKDSSVVQEAVMGRKTSTSSGHSSNLPLPGLHTLYRRPENVTRSL
APVVPKGELVQMRPRLVTSADSLPEHKKTKAPKFVPYEPYPGAVNPMISE
PTNKHKIHRDKNNLDIAVLVDQVSTLRTQELETETTDIKETDTASSHEVN
SLKEELAKMRDERNYFQAQYKFQTQVNSELKSLLVASVGEDLQTRVNLLT
EDKLQLARALLDTANNLTTHTEQIEFLAGQCEVWRSKFLASSVMVEELAR
WKADLTQKNQLLNESTKQLLHATHQIREIQLDMLKQLKFLAKIRFLNLPA
TDVISLSAENLNILQRMVLHTGVGIPEETLKLSSASTSPLCEAEKYAVRA
LEFISQPLMATDEAIRALFDQAQRPHYVQSPASEVTPACDNQQLDKMQ*

GH05665.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17767-PA 447 GF17767-PA 1..437 1..435 1918 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17376-PA 445 GG17376-PA 1..444 1..446 2210 94.4 Plus
Dere\GG17377-PA 175 GG17377-PA 1..164 24..237 436 50.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19143-PA 447 GH19143-PA 11..434 12..430 1601 76.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-PB 448 CG9356-PB 1..448 1..448 2258 100 Plus
CG9356-PA 448 CG9356-PA 1..448 1..448 2258 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23601-PA 448 GI23601-PA 10..438 10..433 1692 75.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13672-PA 431 GL13672-PA 10..431 12..448 1815 80.7 Plus
Dper\GL16461-PA 351 GL16461-PA 21..333 30..381 806 54.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21725-PA 431 GA21725-PA 10..431 12..448 1811 80.7 Plus
Dpse\GA27732-PA 177 GA27732-PA 27..159 229..381 566 79.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26263-PA 447 GM26263-PA 1..447 1..448 2229 94.6 Plus
Dsec\GM16568-PA 447 GM16568-PA 1..447 1..448 2225 94.4 Plus
Dsec\GM16569-PA 89 GM16569-PA 17..82 174..239 251 78.8 Plus
Dsec\GM23906-PA 70 GM23906-PA 23..70 400..448 216 87.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20800-PA 443 GD20800-PA 1..442 1..443 2243 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23575-PA 449 GJ23575-PA 11..448 12..445 1680 76.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12135-PA 443 GK12135-PA 4..429 12..431 1618 74.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24781-PA 445 GE24781-PA 1..444 1..446 2202 93.9 Plus

GH05665.hyp Sequence

Translation from 97 to 1443

> GH05665.hyp
MEANESAMPGTDKSQACRTSGDGMEQPENSGAAKTESEIPASADVDNKVK
RPQLSRKDSSVVQEAVMGRKTSTSSGHSSNLPLPGLHTLYRRPENVTRSL
APVVPKGELVQMRPRLVTSADSLPEHKKTKAPKFVPYEPYPGAVNPMISE
PTNKHKIHRDKNNLDIAVLVDQVSTLRTQELETETTDIKETDTASSHEVN
SLKEELAKMRDERNYFQAQYKFQTQVNSELKSLLVASVGEDLQTRVNLLT
EDKLQLARALLDTANNLTTHTEQIEFLAGQCEVWRSKFLASSVMVEELAR
WKADLTQKNQLLNESTKQLLHATHQIREIQLDMLKQLKFLAKIRFLNLPA
TDVISLSAENLNILQRMVLHTGVGIPEETLKLSSASTSPLCEAEKYAVRA
LEFISQPLMATDEAIRALFDQAQRPHYVQSPASEVTPACDNQQLDKMQ*

GH05665.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-PB 448 CG9356-PB 1..448 1..448 2258 100 Plus
CG9356-PA 448 CG9356-PA 1..448 1..448 2258 100 Plus