Clone GH05885 Report

Search the DGRC for GH05885

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:58
Well:85
Vector:pOT2
Associated Gene/Transcriptmkg-p-RA
Protein status:GH05885.pep: gold
Preliminary Size:2224
Sequenced Size:2215

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7163 2001-09-19 Blastp of sequenced clone
mkg-p 2008-04-29 Release 5.5 accounting
mkg-p 2008-08-15 Release 5.9 accounting
mkg-p 2008-12-18 5.12 accounting

Clone Sequence Records

GH05885.complete Sequence

2215 bp (2215 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058296

> GH05885.complete
ATAAACCTGGCCGTTAAGCAGTAATTAAAACGATTTTTTACAGAAATGCC
GGCCCCTGCCTCGGAATCAACTTCTCCGCCTGGGGATGGTGACGGTAATC
TTGTGCTTTGCATGGTATGCGCTGCTCCCTTCCGGAGTATGCAGGATTGC
CTTGCCCACGAGCTGATCAAGCACGCCAGCAAGCCACAAAAGCAACTGCG
ACAGCGATTGAACGCCATTACCAAGCTATTTAACAGCGCACAAAGCCAAT
CCGAGCGTCAAGAGCTGCGGGAGGCTCTCGAATGGTCCGAGTCCGGCGGG
CACTTGTGCACCGTATTGAATTTCTTTGCTTGTGATCTCGAAAATATGAA
AACCTGCTTCGGGCACGTCCGGAACTGCATAGAGAAGGAGATGAGGGGCA
GGGTTAGGGTGTTCCCCTTTGGTTCACTGGTTACGGGTTTAGCACTGAAG
GAGAGCGACATCGATTTGTTTCTGGAGCCCAACGGCAACCAGCCACCATT
GTTCCATAATCAGCTATACAACAAGACCTCACACTTTTTACGAAGATCCA
AATGCTTTGCGGATGTCTTCACCATTCGTCATGCCAGCGTGCCCATCATT
AGATGTAAGCATCAGCTCACCGGACTCAACATAGACATCAATATGTCAAA
TCCGAATAGCATATATAACTCCCGATTTGTGGGCGAACTGATGTTTCGCA
ATGAGCGGATACGCGAGCTCTGCCTGTTTTTGAAAATTTGGGCCAAGAAG
CTAAAATTGATTAGTCATGGCGGCATGACAAGCTATTGCTTAATATCCTT
GATCATCGTTAACTTGCAAGTGAATCGACTAGTGCCCTCCGTCAAAGAGC
TCCAGTCACTCTGTCCACCGGTTATTTTGTCGGGCGTTAACTATGCCTAC
AGCCTGGACCTAACGCCGCCGATCCCAGCACGGCTCACCACGCTGGATTT
ACTTAAAAACTTCTTCATATACTACTGCACTGTCAACTTTGACAAAAGTG
TATTGAGTCCGTTTCTGGGCGGCTGTGTGGACAAGGAGACAACACTGGGC
ATGCCGGGAGGTTTTCCCGAGTACGATGAGCAACAAAAGCTCGTGCATGA
TGCAATAGGTGCGCCGCCAGACGCTTTCCAGCTGGATAGGGCCATGTGCG
TACAGGATCCCTTCGAGCTCAGTCGCAACGTGGCCAAATCAGTGTCCATT
TCAAATTTATGTTACTTTAGACAATGCCTAGTCCTGGCAGCTCAAGCGTG
CAGCGATCAGGAACTAACTTCGCAACCAGAGAAGCTATACGACTACCTAT
TATTTGGCCTGGCGGATAAGTTAGTAGCCGACAAAATAGTGGCAGATAAA
AGATCAGAAAGGGCTACGCCGCGAAAGCAACAAAAAATTGAAAACGCCCA
TGTGCAACCGCCAATCGTCGATGAGACACAAGAAACAAAAGTCGCCGAAG
TCGGAGTTTGTGGGACACCGCCCTTAGTGCGATCACACGTCATCACGCCC
ACCACAAACGATGTCAAATGCCTGCGCTCCATTGTGCTGGTCAAGAACAC
GGAGAACGATCAGAGCATATATTACTACTGGTTGATCTGCTACGTGGACA
CTATAAAGGATGTGCTAACTCAACTGTATGCTTTGAATGTGGAACTTAAA
GAATCGAAGGAGCCGAAACACTACAAGTGGCTAATCAGCATTTCTTACGA
CACTTGGACAGGACGCTCTTTCCAACGTGGCGCCGGTCAATCTTTCTTCG
CCCACCAGTTGCAGCAGACGATTGAGTTTACGAAGACGAGAATGGGAAAT
CCGCAGTACGCAGTCAATTTGCGCGGCTATTTCACGCTGCAGGCCAGCGA
GGATTACAAAGAGTTGCGCCTGGATGTGCAGCCTCTTCAAGGAGATCTCC
TCGGACTGCAGCGCAATAGTCCGCTAACAAGGCTTTTTAAGGCGTTTAAG
AATCTCCTGGGCAACTATAGTTTCAAAGAGAAGGTCAGCACCTGGAAGTT
TTGCGCCACAACTGACCAAATATGAATATCAACATGTCATGCTTTATGTA
CATACTTTTTGAATTCAATGGCAAATTGAAAACACACCTTAATGACATTA
TTAACATTATTTTATTTGAATGTACAATATCACTATAGGCTAAACTAATA
CCTTAAATTATAAGTGTAACGACGACTAATCATATGTAAAGTTGACTAAA
AAAAAAAAAAAAAAA

GH05885.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
mkg-p-RB 2198 mkg-p-RB 4..2198 1..2195 10975 100 Plus
mkg-p-RA 2211 mkg-p-RA 60..2211 44..2195 10760 100 Plus
CG33057-RA 3106 CG33057-RA 1222..2971 451..2200 8750 100 Plus
CG33057-RA 3106 CG33057-RA 720..1170 1..451 2255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8394322..8396065 2197..451 8610 99.7 Minus
chr3L 24539361 chr3L 8396117..8396567 451..1 2180 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:33:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8402302..8404051 2200..451 8750 100 Minus
3L 28110227 3L 8404103..8404553 451..1 2255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8395402..8397151 2200..451 8750 100 Minus
3L 28103327 3L 8397203..8397653 451..1 2255 100 Minus
Blast to na_te.dros performed 2019-03-15 17:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3051..3165 2058..2169 135 60 Plus

GH05885.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:40:51 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8394322..8396064 452..2197 99 <- Minus
chr3L 8396117..8396567 1..451 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:19:25 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 1..1980 46..2025 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:51 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 1..1980 46..2025 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:17 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RA 1..1980 46..2025 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:05 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 1..1980 46..2025 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:11 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RA 1..1980 46..2025 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:36 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 4..2198 1..2195 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:51 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 4..2198 1..2195 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:17 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 4..2200 1..2197 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:05 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 4..2198 1..2195 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:11 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 4..2200 1..2197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:51 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8402305..8404050 452..2197 100 <- Minus
3L 8404103..8404553 1..451 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:51 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8402305..8404050 452..2197 100 <- Minus
3L 8404103..8404553 1..451 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:51 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8402305..8404050 452..2197 100 <- Minus
3L 8404103..8404553 1..451 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:17 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8395405..8397150 452..2197 100 <- Minus
arm_3L 8397203..8397653 1..451 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:19 Download gff for GH05885.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8397203..8397653 1..451 100   Minus
3L 8395405..8397150 452..2197 100 <- Minus

GH05885.hyp Sequence

Translation from 45 to 2024

> GH05885.hyp
MPAPASESTSPPGDGDGNLVLCMVCAAPFRSMQDCLAHELIKHASKPQKQ
LRQRLNAITKLFNSAQSQSERQELREALEWSESGGHLCTVLNFFACDLEN
MKTCFGHVRNCIEKEMRGRVRVFPFGSLVTGLALKESDIDLFLEPNGNQP
PLFHNQLYNKTSHFLRRSKCFADVFTIRHASVPIIRCKHQLTGLNIDINM
SNPNSIYNSRFVGELMFRNERIRELCLFLKIWAKKLKLISHGGMTSYCLI
SLIIVNLQVNRLVPSVKELQSLCPPVILSGVNYAYSLDLTPPIPARLTTL
DLLKNFFIYYCTVNFDKSVLSPFLGGCVDKETTLGMPGGFPEYDEQQKLV
HDAIGAPPDAFQLDRAMCVQDPFELSRNVAKSVSISNLCYFRQCLVLAAQ
ACSDQELTSQPEKLYDYLLFGLADKLVADKIVADKRSERATPRKQQKIEN
AHVQPPIVDETQETKVAEVGVCGTPPLVRSHVITPTTNDVKCLRSIVLVK
NTENDQSIYYYWLICYVDTIKDVLTQLYALNVELKESKEPKHYKWLISIS
YDTWTGRSFQRGAGQSFFAHQLQQTIEFTKTRMGNPQYAVNLRGYFTLQA
SEDYKELRLDVQPLQGDLLGLQRNSPLTRLFKAFKNLLGNYSFKEKVSTW
KFCATTDQI*

GH05885.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
mkg-p-PD 659 CG7163-PD 1..659 1..659 3469 100 Plus
mkg-p-PB 659 CG7163-PB 1..659 1..659 3469 100 Plus
mkg-p-PA 659 CG7163-PA 1..659 1..659 3469 100 Plus
CG1091-PC 563 CG1091-PC 260..532 120..384 224 27 Plus
CG1091-PA 505 CG1091-PA 205..474 120..384 222 27.1 Plus

GH05885.pep Sequence

Translation from 45 to 2024

> GH05885.pep
MPAPASESTSPPGDGDGNLVLCMVCAAPFRSMQDCLAHELIKHASKPQKQ
LRQRLNAITKLFNSAQSQSERQELREALEWSESGGHLCTVLNFFACDLEN
MKTCFGHVRNCIEKEMRGRVRVFPFGSLVTGLALKESDIDLFLEPNGNQP
PLFHNQLYNKTSHFLRRSKCFADVFTIRHASVPIIRCKHQLTGLNIDINM
SNPNSIYNSRFVGELMFRNERIRELCLFLKIWAKKLKLISHGGMTSYCLI
SLIIVNLQVNRLVPSVKELQSLCPPVILSGVNYAYSLDLTPPIPARLTTL
DLLKNFFIYYCTVNFDKSVLSPFLGGCVDKETTLGMPGGFPEYDEQQKLV
HDAIGAPPDAFQLDRAMCVQDPFELSRNVAKSVSISNLCYFRQCLVLAAQ
ACSDQELTSQPEKLYDYLLFGLADKLVADKIVADKRSERATPRKQQKIEN
AHVQPPIVDETQETKVAEVGVCGTPPLVRSHVITPTTNDVKCLRSIVLVK
NTENDQSIYYYWLICYVDTIKDVLTQLYALNVELKESKEPKHYKWLISIS
YDTWTGRSFQRGAGQSFFAHQLQQTIEFTKTRMGNPQYAVNLRGYFTLQA
SEDYKELRLDVQPLQGDLLGLQRNSPLTRLFKAFKNLLGNYSFKEKVSTW
KFCATTDQI*

GH05885.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10110-PA 665 GF10110-PA 1..651 1..652 2387 69 Plus
Dana\GF17325-PA 566 GF17325-PA 280..555 119..391 224 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15086-PA 659 GG15086-PA 1..659 1..659 3088 85.6 Plus
Dere\GG10113-PA 567 GG10113-PA 269..545 120..391 248 28.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16410-PA 679 GH16410-PA 2..677 8..652 1476 44.1 Plus
Dgri\GH18593-PA 566 GH18593-PA 273..549 120..391 247 28.4 Plus
Dgri\GH21064-PA 578 GH21064-PA 212..467 119..383 155 25.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
mkg-p-PD 659 CG7163-PD 1..659 1..659 3469 100 Plus
mkg-p-PB 659 CG7163-PB 1..659 1..659 3469 100 Plus
mkg-p-PA 659 CG7163-PA 1..659 1..659 3469 100 Plus
Tailor-PC 563 CG1091-PC 260..532 120..384 224 27 Plus
Tailor-PA 505 CG1091-PA 205..474 120..384 222 27.1 Plus
Tailor-PB 560 CG1091-PB 260..529 120..384 222 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12491-PA 665 GI12491-PA 5..663 7..652 1790 51.4 Plus
Dmoj\GI23075-PA 564 GI23075-PA 273..542 120..384 250 27.7 Plus
Dmoj\GI15889-PA 550 GI15889-PA 165..430 107..383 176 26 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24574-PA 676 GL24574-PA 4..666 2..650 1742 52 Plus
Dper\GL12677-PA 541 GL12677-PA 246..519 120..391 215 24.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20147-PA 676 GA20147-PA 4..666 2..650 1735 51.8 Plus
Dpse\GA10633-PC 444 GA10633-PC 149..422 120..391 215 24.7 Plus
Dpse\GA10633-PA 541 GA10633-PA 246..519 120..391 215 24.7 Plus
Dpse\GA30191-PA 264 GA30191-PA 18..255 108..331 167 25.3 Plus
Dpse\GA30192-PA 310 GA30192-PA 13..246 106..325 157 24.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\mkg-p-PA 659 GM24942-PA 1..659 1..659 3230 90.4 Plus
Dsec\mkg-r-PA 465 GM16555-PA 1..428 1..428 1993 86.4 Plus
Dsec\GM10512-PA 563 GM10512-PA 263..539 120..391 233 26.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14279-PA 228 GD14279-PA 1..228 1..228 959 78.5 Plus
Dsim\mkg-r-PA 169 GD24699-PA 43..169 312..438 612 89.8 Plus
Dsim\GD19509-PA 571 GD19509-PA 267..540 120..384 209 25.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12395-PA 726 GJ12395-PA 5..461 7..464 1301 53.8 Plus
Dvir\GJ12395-PA 726 GJ12395-PA 530..718 470..647 539 54.5 Plus
Dvir\GJ22696-PA 561 GJ22696-PA 268..537 120..384 221 24.7 Plus
Dvir\GJ16636-PA 1399 GJ16636-PA 1029..1268 112..328 162 27.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18036-PA 582 GK18036-PA 12..560 69..651 1176 41.4 Plus
Dwil\GK14518-PA 565 GK14518-PA 265..542 117..391 245 27.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21309-PA 659 GE21309-PA 1..659 1..659 3033 83.9 Plus
Dyak\GE25820-PA 559 GE25820-PA 257..549 117..404 223 25.5 Plus