BDGP Sequence Production Resources |
Search the DGRC for GH05923
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 59 |
Well: | 23 |
Vector: | pOT2 |
Associated Gene/Transcript | Reph-RB |
Protein status: | GH05923.pep: gold |
Preliminary Size: | 3094 |
Sequenced Size: | 2932 |
Gene | Date | Evidence |
---|---|---|
CG3920 | 2001-01-01 | Release 2 assignment |
CG3920 | 2002-06-07 | Blastp of sequenced clone |
CG3920 | 2003-01-01 | Sim4 clustering to Release 3 |
l(2)k16918 | 2008-04-29 | Release 5.5 accounting |
l(2)k16918 | 2008-08-15 | Release 5.9 accounting |
l(2)k16918 | 2008-12-18 | 5.12 accounting |
2932 bp (2932 high quality bases) assembled on 2002-06-07
GenBank Submission: AY119477
> GH05923.complete TTAGCCGGTGACGGGCGGTGGGCTGTAGCGAATATACCCGATATATACCC GATACACACAGTAACACCGTAGTAACCAGCAAAGTCAGCAGGCGTAGGCG GATCCAAAACAGTTGCACAACTGCATTTCGCTAGGAAATTCGAAAAACGC CGAAGAGCAGAACTTAAGCTAATGCCGCGCAGTGTTTGAAAACCAATTTC GATGGGTTAAAAGACATCAAGCAGCAAAGCTTAACCCTTTGGAGGTGCGG TGTGCCTGTTTATTATTTTTTTTTTGCGGATTTCGCGTCGTCTGGTTGCC TTTCCCGTAGCCGTGCCAAAAAAATCGATAATTCCGTGCTGTATAAGTTA CGGCGAAAGGTGCGCGGATATTCCGTTCGGGATTTGAGTTCGGTTCGGGT GATTTGAGGACCACAGCCAAGTGTGCGCGAAAGAGAGTGTGTGGAGCAAG AGATTTGCAAAAAATCACAATAAAACACTCGAAGTTGCAAATTCAAAGAT CGAAACGGAGTTTTCATGAAAAATATAATAGCTTGTGATCAGTCCAGATA TCGGAATATTTGGAAAATATGCTATAAAACTCGGAAAACAACTTCTTTAA AACAAGGAAACCGAAGAGAGAGGGCAGGAACTCTAACTCTCTCGCCGCTA CCGTTACTCGTTGACTACGCATTTACAACCGAAGAGAGTGCGAGAGAACG TAAACGTGATTGAAATTTTTGCACAAAAGGGATGCACGACGAAGCAGCGC GTAAAAATAACAAACAAAAATACATGCGGAGGCGTATAAATAGAAACGGC GTGTAAAGCGCAACGGCACAAAAGTCGGTAGTATGTAGTAATAGTAGCGC GAACAGAAGGCGAAGGAGAAGCACAGGCACAAGGAAAAGCAGAAGAAGGA GAGGAATAGCGAATTCGACGTCGACTGCGGCGCCGACTGCGACTGCGGCG TCGTAGTAAGTTTTCTGCACTGTGTGTGTGCGCTGCGTGGGTGCATCGTT GTCATTGTGTGCGTGTGGCATGCGAAGTGAATAACAGCCAAAGTAGAAAA TCATGATAAAGTTTGTCAGACAGAAAAATCGCGAAAATACACTGAGGGAA TCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAATGACTCTGGCACCGA ATCTGATGGTGAACTCCTCGATGTGGAAAACCAACGTCACTTAGACGTGG ATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAGCTTCTGCAATGATG TGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTCATGTACGACCAGCA CAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCCGTCCTCGCAGGCGG GTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGTGTGCCTCCCGGATC TCGAATCGCGGATGCACCTCCTCGCTGGACACGGAGGCGCCCTACGAGGA GCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTCCACGCTGATGGTGG AGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACGATGAGTTGCGCAAC TCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGCACATCGCCGCCATT GGAGGCATTCAAGCCAAATCGTAGCCATATGATGTTCCGCTCCACAACGC CACTGATATTATCGGAGGCCCGATGTGGCATCGAAAATATTAAATTATGT GATAATAGTGTAAACGAGGAGAATGGTGACAACGGCGGTGGCGGTGGCGC GGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACTGGCAGGGAATGCCA GCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCGGCAACGAGAATGAG CCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAGATGAGCAACAGCAG CCACCACATTTACCAGCCGCAGCCGAAATATAGTTTCCACTACAACAGCT CGCGGAGCAGTCCGGCCAGCACCACTGGCCTGGATATGGAGGTGCGTTCG GTCAGTCCGCCGGCGAAACTGTTCCACTGCGCCATATCGCCCAGGCGGCG ACCCAGTAACAATGCCAGTGGTGCAGCCGGGGGCGCCACAACAATATCAC CATCGTCAGCATCATCATCATCAGGCACAACAACGACACACAATGCTGCC AATTCCGCCGGAAATGCCGCTAACGTCACCGCCGTCGCCACCCAGAGACT GCAGCGACCGCATCGGCCGTGTTTAGATTTTGATAAGATGCAGCAGGTTA GTCTCTAATGCAGAGCACGCTAACACCAGAGCAGCAGCCGGAAAAGGATC GTCGTCGGATTGGGACGGGGAGCAGGATGGTCAACGGAACGGGGGGCAAA TCAAAGACTTTTTATACGAACCAACAACCACAGCAGGACGCTGAAACTGA AACAGCATTCGGAGGATAACCAGAGTGTCTAGGGGCAGCTAGTAAAACCC CTAGATTATGCAAGCGAGCAGTTTCAGGATTCAGATTCAAGCGCAAACAG CAGCGGGAAATATCATCAAATCAAATTATATAAATCTAAAGGTAATTCAA ATTTTAACGCAAACCAAAAAACACAAAAAAGAGACAAACCTAAAATTTAC AATAGATGCAGCTATTTTTTCACAATTTTAAACTGAAAAACTGTAACAAA AACTGTAATGCGAACACGGATCGAAAGTTGAGGAGGACAAACAATAGATT TGTAGAAGCTCCGGGATGTAAAAGATCGAAAGTTGAGTCAAAATTGAGGG TTTAGAGACGGAAAATCATATGCCAGCCGTATGATAGAAAGGATCACAAG AATTGATTAAAAATATGTTCAAGGAAAAGCTCTGGGTGTAATGAATTAGA TGATAAAAATCCAGCCAGTGGAAACTGTGAACTGTAAATATTGTATTTGT GTGGGAAAAACCAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)k16918.b | 4819 | l(2)k16918.b | 90..3016 | 1..2928 | 14600 | 99.9 | Plus |
l(2)k16918-RB | 3169 | l(2)k16918-RB | 90..3016 | 1..2928 | 14600 | 99.9 | Plus |
l(2)k16918.a | 4042 | l(2)k16918.a | 436..2239 | 1125..2928 | 9020 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 3807038..3808410 | 1540..2912 | 6775 | 99.6 | Plus |
chr2L | 23010047 | chr2L | 3805213..3806336 | 1..1124 | 5465 | 99.5 | Plus |
chr2L | 23010047 | chr2L | 3806648..3806976 | 1213..1541 | 1645 | 100 | Plus |
chr2L | 23010047 | chr2L | 3806482..3806573 | 1123..1214 | 460 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 3807523..3808911 | 1540..2928 | 6945 | 100 | Plus |
2L | 23513712 | 2L | 3805699..3806821 | 1..1124 | 5570 | 99.9 | Plus |
2L | 23513712 | 2L | 3807133..3807461 | 1213..1541 | 1645 | 100 | Plus |
2L | 23513712 | 2L | 3806967..3807058 | 1123..1214 | 460 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 3807523..3808911 | 1540..2928 | 6945 | 100 | Plus |
2L | 23513712 | 2L | 3805699..3806821 | 1..1124 | 5580 | 99.9 | Plus |
2L | 23513712 | 2L | 3807133..3807461 | 1213..1541 | 1645 | 100 | Plus |
2L | 23513712 | 2L | 3806967..3807058 | 1123..1214 | 460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 3805213..3806066 | 1..854 | 99 | == | Plus |
chr2L | 3806119..3806336 | 907..1124 | 100 | -> | Plus |
chr2L | 3806484..3806571 | 1125..1212 | 100 | -> | Plus |
chr2L | 3806648..3806976 | 1213..1541 | 100 | -> | Plus |
chr2L | 3807040..3808410 | 1542..2912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k16918-RB | 1..1206 | 1053..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k16918-RB | 1..1206 | 1053..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reph-RB | 1..1206 | 1053..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k16918-RB | 1..1206 | 1053..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reph-RB | 1..1206 | 1053..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k16918-RB | 1..2911 | 1..2912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k16918-RB | 1..2911 | 1..2912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reph-RB | 18..2928 | 1..2912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)k16918-RB | 1..2911 | 1..2912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reph-RB | 18..2928 | 1..2912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3805699..3806821 | 1..1124 | 99 | -> | Plus |
2L | 3806969..3807056 | 1125..1212 | 100 | -> | Plus |
2L | 3807133..3807461 | 1213..1541 | 100 | -> | Plus |
2L | 3807525..3808895 | 1542..2912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3805699..3806821 | 1..1124 | 99 | -> | Plus |
2L | 3806969..3807056 | 1125..1212 | 100 | -> | Plus |
2L | 3807133..3807461 | 1213..1541 | 100 | -> | Plus |
2L | 3807525..3808895 | 1542..2912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3805699..3806821 | 1..1124 | 99 | -> | Plus |
2L | 3806969..3807056 | 1125..1212 | 100 | -> | Plus |
2L | 3807133..3807461 | 1213..1541 | 100 | -> | Plus |
2L | 3807525..3808895 | 1542..2912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 3805699..3806821 | 1..1124 | 99 | -> | Plus |
arm_2L | 3806969..3807056 | 1125..1212 | 100 | -> | Plus |
arm_2L | 3807133..3807461 | 1213..1541 | 100 | -> | Plus |
arm_2L | 3807525..3808895 | 1542..2912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3807133..3807461 | 1213..1541 | 100 | -> | Plus |
2L | 3805699..3806821 | 1..1124 | 99 | -> | Plus |
2L | 3806969..3807056 | 1125..1212 | 100 | -> | Plus |
2L | 3807525..3808895 | 1542..2912 | 100 | Plus |
Translation from 1052 to 2257
> GH05923.pep MIKFVRQKNRENTLRESKNFMRKKRESNDSGTESDGELLDVENQRHLDVD METSVAGQKPIASAMMCHQQTSSSCAHLMYDQHSSEEELEVINGPSSQAG QHPGTAATGSSCASRISNRGCTSSLDTEAPYEERATTSNSKRSSSTLMVE NRKRSLAHSSDDELRNSLEPILTPVNFRTSPPLEAFKPNRSHMMFRSTTP LILSEARCGIENIKLCDNSVNEENGDNGGGGGAANSSKCAKIGALAGNAS GTVAATGNGNGGNENEPSVIKACSSSLKMSNSSHHIYQPQPKYSFHYNSS RSSPASTTGLDMEVRSVSPPAKLFHCAISPRRRPSNNASGAAGGATTISP SSASSSSGTTTTHNAANSAGNAANVTAVATQRLQRPHRPCLDFDKMQQVS L*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15037-PA | 402 | GF15037-PA | 1..380 | 1..398 | 1461 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24970-PA | 405 | GG24970-PA | 1..405 | 1..401 | 2028 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22254-PA | 438 | GH22254-PA | 1..438 | 1..401 | 1224 | 65.3 | Plus |
Dgri\GH11191-PA | 55 | GH11191-PA | 1..54 | 1..54 | 225 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Reph-PB | 401 | CG3920-PB | 1..401 | 1..401 | 2066 | 100 | Plus |
Reph-PA | 351 | CG3920-PA | 1..351 | 51..401 | 1811 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18112-PA | 412 | GI18112-PA | 1..412 | 1..401 | 1375 | 70.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18680-PA | 408 | GL18680-PA | 1..408 | 1..401 | 1517 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17774-PA | 409 | GA17774-PA | 1..409 | 1..401 | 1491 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18440-PA | 399 | GM18440-PA | 1..399 | 1..401 | 2083 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23257-PA | 399 | GD23257-PA | 1..399 | 1..401 | 2083 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16299-PA | 392 | GJ16299-PA | 1..392 | 1..401 | 1281 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14652-PA | 393 | GK14652-PA | 1..393 | 1..401 | 1194 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18261-PA | 405 | GE18261-PA | 1..405 | 1..401 | 1767 | 92.1 | Plus |
Translation from 1052 to 2257
> GH05923.hyp MIKFVRQKNRENTLRESKNFMRKKRESNDSGTESDGELLDVENQRHLDVD METSVAGQKPIASAMMCHQQTSSSCAHLMYDQHSSEEELEVINGPSSQAG QHPGTAATGSSCASRISNRGCTSSLDTEAPYEERATTSNSKRSSSTLMVE NRKRSLAHSSDDELRNSLEPILTPVNFRTSPPLEAFKPNRSHMMFRSTTP LILSEARCGIENIKLCDNSVNEENGDNGGGGGAANSSKCAKIGALAGNAS GTVAATGNGNGGNENEPSVIKACSSSLKMSNSSHHIYQPQPKYSFHYNSS RSSPASTTGLDMEVRSVSPPAKLFHCAISPRRRPSNNASGAAGGATTISP SSASSSSGTTTTHNAANSAGNAANVTAVATQRLQRPHRPCLDFDKMQQVS L*