Clone GH05923 Report

Search the DGRC for GH05923

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:59
Well:23
Vector:pOT2
Associated Gene/TranscriptReph-RB
Protein status:GH05923.pep: gold
Preliminary Size:3094
Sequenced Size:2932

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3920 2001-01-01 Release 2 assignment
CG3920 2002-06-07 Blastp of sequenced clone
CG3920 2003-01-01 Sim4 clustering to Release 3
l(2)k16918 2008-04-29 Release 5.5 accounting
l(2)k16918 2008-08-15 Release 5.9 accounting
l(2)k16918 2008-12-18 5.12 accounting

Clone Sequence Records

GH05923.complete Sequence

2932 bp (2932 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119477

> GH05923.complete
TTAGCCGGTGACGGGCGGTGGGCTGTAGCGAATATACCCGATATATACCC
GATACACACAGTAACACCGTAGTAACCAGCAAAGTCAGCAGGCGTAGGCG
GATCCAAAACAGTTGCACAACTGCATTTCGCTAGGAAATTCGAAAAACGC
CGAAGAGCAGAACTTAAGCTAATGCCGCGCAGTGTTTGAAAACCAATTTC
GATGGGTTAAAAGACATCAAGCAGCAAAGCTTAACCCTTTGGAGGTGCGG
TGTGCCTGTTTATTATTTTTTTTTTGCGGATTTCGCGTCGTCTGGTTGCC
TTTCCCGTAGCCGTGCCAAAAAAATCGATAATTCCGTGCTGTATAAGTTA
CGGCGAAAGGTGCGCGGATATTCCGTTCGGGATTTGAGTTCGGTTCGGGT
GATTTGAGGACCACAGCCAAGTGTGCGCGAAAGAGAGTGTGTGGAGCAAG
AGATTTGCAAAAAATCACAATAAAACACTCGAAGTTGCAAATTCAAAGAT
CGAAACGGAGTTTTCATGAAAAATATAATAGCTTGTGATCAGTCCAGATA
TCGGAATATTTGGAAAATATGCTATAAAACTCGGAAAACAACTTCTTTAA
AACAAGGAAACCGAAGAGAGAGGGCAGGAACTCTAACTCTCTCGCCGCTA
CCGTTACTCGTTGACTACGCATTTACAACCGAAGAGAGTGCGAGAGAACG
TAAACGTGATTGAAATTTTTGCACAAAAGGGATGCACGACGAAGCAGCGC
GTAAAAATAACAAACAAAAATACATGCGGAGGCGTATAAATAGAAACGGC
GTGTAAAGCGCAACGGCACAAAAGTCGGTAGTATGTAGTAATAGTAGCGC
GAACAGAAGGCGAAGGAGAAGCACAGGCACAAGGAAAAGCAGAAGAAGGA
GAGGAATAGCGAATTCGACGTCGACTGCGGCGCCGACTGCGACTGCGGCG
TCGTAGTAAGTTTTCTGCACTGTGTGTGTGCGCTGCGTGGGTGCATCGTT
GTCATTGTGTGCGTGTGGCATGCGAAGTGAATAACAGCCAAAGTAGAAAA
TCATGATAAAGTTTGTCAGACAGAAAAATCGCGAAAATACACTGAGGGAA
TCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAATGACTCTGGCACCGA
ATCTGATGGTGAACTCCTCGATGTGGAAAACCAACGTCACTTAGACGTGG
ATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAGCTTCTGCAATGATG
TGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTCATGTACGACCAGCA
CAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCCGTCCTCGCAGGCGG
GTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGTGTGCCTCCCGGATC
TCGAATCGCGGATGCACCTCCTCGCTGGACACGGAGGCGCCCTACGAGGA
GCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTCCACGCTGATGGTGG
AGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACGATGAGTTGCGCAAC
TCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGCACATCGCCGCCATT
GGAGGCATTCAAGCCAAATCGTAGCCATATGATGTTCCGCTCCACAACGC
CACTGATATTATCGGAGGCCCGATGTGGCATCGAAAATATTAAATTATGT
GATAATAGTGTAAACGAGGAGAATGGTGACAACGGCGGTGGCGGTGGCGC
GGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACTGGCAGGGAATGCCA
GCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCGGCAACGAGAATGAG
CCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAGATGAGCAACAGCAG
CCACCACATTTACCAGCCGCAGCCGAAATATAGTTTCCACTACAACAGCT
CGCGGAGCAGTCCGGCCAGCACCACTGGCCTGGATATGGAGGTGCGTTCG
GTCAGTCCGCCGGCGAAACTGTTCCACTGCGCCATATCGCCCAGGCGGCG
ACCCAGTAACAATGCCAGTGGTGCAGCCGGGGGCGCCACAACAATATCAC
CATCGTCAGCATCATCATCATCAGGCACAACAACGACACACAATGCTGCC
AATTCCGCCGGAAATGCCGCTAACGTCACCGCCGTCGCCACCCAGAGACT
GCAGCGACCGCATCGGCCGTGTTTAGATTTTGATAAGATGCAGCAGGTTA
GTCTCTAATGCAGAGCACGCTAACACCAGAGCAGCAGCCGGAAAAGGATC
GTCGTCGGATTGGGACGGGGAGCAGGATGGTCAACGGAACGGGGGGCAAA
TCAAAGACTTTTTATACGAACCAACAACCACAGCAGGACGCTGAAACTGA
AACAGCATTCGGAGGATAACCAGAGTGTCTAGGGGCAGCTAGTAAAACCC
CTAGATTATGCAAGCGAGCAGTTTCAGGATTCAGATTCAAGCGCAAACAG
CAGCGGGAAATATCATCAAATCAAATTATATAAATCTAAAGGTAATTCAA
ATTTTAACGCAAACCAAAAAACACAAAAAAGAGACAAACCTAAAATTTAC
AATAGATGCAGCTATTTTTTCACAATTTTAAACTGAAAAACTGTAACAAA
AACTGTAATGCGAACACGGATCGAAAGTTGAGGAGGACAAACAATAGATT
TGTAGAAGCTCCGGGATGTAAAAGATCGAAAGTTGAGTCAAAATTGAGGG
TTTAGAGACGGAAAATCATATGCCAGCCGTATGATAGAAAGGATCACAAG
AATTGATTAAAAATATGTTCAAGGAAAAGCTCTGGGTGTAATGAATTAGA
TGATAAAAATCCAGCCAGTGGAAACTGTGAACTGTAAATATTGTATTTGT
GTGGGAAAAACCAAAAAAAAAAAAAAAAAAAA

GH05923.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k16918.b 4819 l(2)k16918.b 90..3016 1..2928 14600 99.9 Plus
l(2)k16918-RB 3169 l(2)k16918-RB 90..3016 1..2928 14600 99.9 Plus
l(2)k16918.a 4042 l(2)k16918.a 436..2239 1125..2928 9020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3807038..3808410 1540..2912 6775 99.6 Plus
chr2L 23010047 chr2L 3805213..3806336 1..1124 5465 99.5 Plus
chr2L 23010047 chr2L 3806648..3806976 1213..1541 1645 100 Plus
chr2L 23010047 chr2L 3806482..3806573 1123..1214 460 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:33:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3807523..3808911 1540..2928 6945 100 Plus
2L 23513712 2L 3805699..3806821 1..1124 5570 99.9 Plus
2L 23513712 2L 3807133..3807461 1213..1541 1645 100 Plus
2L 23513712 2L 3806967..3807058 1123..1214 460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3807523..3808911 1540..2928 6945 100 Plus
2L 23513712 2L 3805699..3806821 1..1124 5580 99.9 Plus
2L 23513712 2L 3807133..3807461 1213..1541 1645 100 Plus
2L 23513712 2L 3806967..3807058 1123..1214 460 100 Plus
Blast to na_te.dros performed 2019-03-15 17:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1056..1158 2037..2138 152 62.1 Plus
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 2595..2677 442..525 120 61.9 Plus

GH05923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:44:14 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3805213..3806066 1..854 99 == Plus
chr2L 3806119..3806336 907..1124 100 -> Plus
chr2L 3806484..3806571 1125..1212 100 -> Plus
chr2L 3806648..3806976 1213..1541 100 -> Plus
chr2L 3807040..3808410 1542..2912 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:19:34 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1..1206 1053..2258 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:29:22 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1..1206 1053..2258 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:44:07 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1..1206 1053..2258 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:19:38 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1..1206 1053..2258 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:52 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 1..1206 1053..2258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:58:38 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1..2911 1..2912 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:29:22 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1..2911 1..2912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:44:07 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 18..2928 1..2912 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:19:38 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k16918-RB 1..2911 1..2912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:52 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
Reph-RB 18..2928 1..2912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:14 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3805699..3806821 1..1124 99 -> Plus
2L 3806969..3807056 1125..1212 100 -> Plus
2L 3807133..3807461 1213..1541 100 -> Plus
2L 3807525..3808895 1542..2912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:14 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3805699..3806821 1..1124 99 -> Plus
2L 3806969..3807056 1125..1212 100 -> Plus
2L 3807133..3807461 1213..1541 100 -> Plus
2L 3807525..3808895 1542..2912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:14 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3805699..3806821 1..1124 99 -> Plus
2L 3806969..3807056 1125..1212 100 -> Plus
2L 3807133..3807461 1213..1541 100 -> Plus
2L 3807525..3808895 1542..2912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:44:07 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3805699..3806821 1..1124 99 -> Plus
arm_2L 3806969..3807056 1125..1212 100 -> Plus
arm_2L 3807133..3807461 1213..1541 100 -> Plus
arm_2L 3807525..3808895 1542..2912 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:16 Download gff for GH05923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3807133..3807461 1213..1541 100 -> Plus
2L 3805699..3806821 1..1124 99 -> Plus
2L 3806969..3807056 1125..1212 100 -> Plus
2L 3807525..3808895 1542..2912 100   Plus

GH05923.pep Sequence

Translation from 1052 to 2257

> GH05923.pep
MIKFVRQKNRENTLRESKNFMRKKRESNDSGTESDGELLDVENQRHLDVD
METSVAGQKPIASAMMCHQQTSSSCAHLMYDQHSSEEELEVINGPSSQAG
QHPGTAATGSSCASRISNRGCTSSLDTEAPYEERATTSNSKRSSSTLMVE
NRKRSLAHSSDDELRNSLEPILTPVNFRTSPPLEAFKPNRSHMMFRSTTP
LILSEARCGIENIKLCDNSVNEENGDNGGGGGAANSSKCAKIGALAGNAS
GTVAATGNGNGGNENEPSVIKACSSSLKMSNSSHHIYQPQPKYSFHYNSS
RSSPASTTGLDMEVRSVSPPAKLFHCAISPRRRPSNNASGAAGGATTISP
SSASSSSGTTTTHNAANSAGNAANVTAVATQRLQRPHRPCLDFDKMQQVS
L*

GH05923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15037-PA 402 GF15037-PA 1..380 1..398 1461 82.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24970-PA 405 GG24970-PA 1..405 1..401 2028 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22254-PA 438 GH22254-PA 1..438 1..401 1224 65.3 Plus
Dgri\GH11191-PA 55 GH11191-PA 1..54 1..54 225 88.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-PB 401 CG3920-PB 1..401 1..401 2066 100 Plus
Reph-PA 351 CG3920-PA 1..351 51..401 1811 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18112-PA 412 GI18112-PA 1..412 1..401 1375 70.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18680-PA 408 GL18680-PA 1..408 1..401 1517 78.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17774-PA 409 GA17774-PA 1..409 1..401 1491 77.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18440-PA 399 GM18440-PA 1..399 1..401 2083 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23257-PA 399 GD23257-PA 1..399 1..401 2083 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16299-PA 392 GJ16299-PA 1..392 1..401 1281 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14652-PA 393 GK14652-PA 1..393 1..401 1194 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18261-PA 405 GE18261-PA 1..405 1..401 1767 92.1 Plus

GH05923.hyp Sequence

Translation from 1052 to 2257

> GH05923.hyp
MIKFVRQKNRENTLRESKNFMRKKRESNDSGTESDGELLDVENQRHLDVD
METSVAGQKPIASAMMCHQQTSSSCAHLMYDQHSSEEELEVINGPSSQAG
QHPGTAATGSSCASRISNRGCTSSLDTEAPYEERATTSNSKRSSSTLMVE
NRKRSLAHSSDDELRNSLEPILTPVNFRTSPPLEAFKPNRSHMMFRSTTP
LILSEARCGIENIKLCDNSVNEENGDNGGGGGAANSSKCAKIGALAGNAS
GTVAATGNGNGGNENEPSVIKACSSSLKMSNSSHHIYQPQPKYSFHYNSS
RSSPASTTGLDMEVRSVSPPAKLFHCAISPRRRPSNNASGAAGGATTISP
SSASSSSGTTTTHNAANSAGNAANVTAVATQRLQRPHRPCLDFDKMQQVS
L*

GH05923.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Reph-PB 401 CG3920-PB 1..401 1..401 2066 100 Plus
Reph-PA 351 CG3920-PA 1..351 51..401 1811 100 Plus