Clone GH05942 Report

Search the DGRC for GH05942

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:59
Well:42
Vector:pOT2
Associated Gene/TranscriptCG3529-RB
Protein status:GH05942.pep: gold
Preliminary Size:2200
Sequenced Size:2103

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3529 2001-01-01 Release 2 assignment
CG3529 2001-09-19 Blastp of sequenced clone
CG3529 2003-01-01 Sim4 clustering to Release 3
CG3529 2008-04-29 Release 5.5 accounting
CG3529 2008-08-15 Release 5.9 accounting
CG3529 2008-12-18 5.12 accounting

Clone Sequence Records

GH05942.complete Sequence

2103 bp (2103 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058297

> GH05942.complete
ATAAACATTTCATCCAGGTGAACAAAAAGTAAATAAAGAACAATTTTAAC
CGCACTGCAACCCAACGGCGAGCATTAATAAGAAACTTCTCCACGATGGC
TTCATTTTTCAACGTTGGCGCCTTGGGAAATGTTTTCTCCACTCCAGTTG
GCCAGCGCATAGAGGCCGCCACCGATGCCAACCTGGCCTCGGAGAACTGG
GCCGCCAACATGGAGATCTGCGACATGATCAACGAATCCTCCGACACTGC
ACGCGATGCTATGCGTGCCATTCGCAAACGCCTCTCCCAGAACGCCGGCA
AAAACAACCAGGTGGTGATGTACACGCTGACCGTCCTGGAGACATGCGTG
AAGAACTGCGGCAAGGCCTTCCATGTCCTGGTGGCCCAGAAGGACTTCAT
CAACGAGCTGGTCAAGCTGATTGGGCCCAAGAACGATCCACCAGCCGCCA
TGCAGGAGAAGGTTCTCAGTCTGATACAAATCTGGGCGGATGCGTTTAAG
AACCAACCGGATCTCAACGGCGTCACCCAGATGTACATGGAATTGAAAAA
CAAGGGCATCGAGTTTCCAGCCAACGATCTGGATGCCATGGCACCCATTT
ACACGCCACAGAGGAGTGTTCCCGAGATGCCCCCTCAGCTGGTGGCCGCT
CAGCAGCACACAATCTCGCCTCAACACATGGCTGCCGCTGCTGCCGCCGC
AGCTGCAGCCGCAGCTCCACCCAGCACAGGTCCTTTGCATTTGACTCCCG
AGCAAGCGGCTAAGCTGCGCTCCGAACTGGAGATCGTTAGCAACAATATG
TCCATCCTCAGCGAGATGCTCAGTGTTCTGAAGCCCGGCCAGGAGTCGCC
CGATGACTATGCCCTGCTCAATGAGCTCACCTCGACCTGCAAGGAGATGC
AGTCTCGCATCGTGGATCTGATTGGACGTGTCCAGGACGACGAGCTCACC
GCGGAGTTCCTGCGCATCAATGACGAGCTGAACAATGTGTTCTTGCGCCA
CCAGCGTTACGAGAAAAATCGTTCGCAGGGCCAGGGTGCTGGTGTTACCT
CGCCCTCGGCTGTGCTGGGCGCAGCCATGGGCCTGCCCGGTGTGGGAGCA
GCTGGAGCAGGAGCCACCACGGTGGCTACGCTACCACCTCCGCCCACAAC
TACCGCCGTGAGCAATACGCCGCAAAGTGACCAACTGCTGATCGATCTAA
TCGAAAGCAGCGAGGAAGCCCAACTGCCACAGAGTTTGGGACAGATCAGC
CTGGGTGGTGGAGCACCCATTGGGGTGCAGAGGAGCGCACGACCTGCCGA
TGAATTCGATATGCTGGCACAGTCGCGCACCGATGGCAACCATAAATCGG
ACTTGCTGCGGGACATTCCCTCGGTGGACGCTGCTGCTGGGAGTGTGACT
GCCACCGCCTCGCCTTACAAACCAAATCAACCGCAGCAGGCACAGCGCTC
AGCCGGCGAACCGCCGGTGGTAAGTAAATCGACGAAAGAGAATGAGATCG
ACGAGATGGAGGCGTGGTTGGGCAGCTCACACATCGAGGGAATTGAGGAG
CTGACCAGCTCGGAGTTTGACAAATTCCTAGAGGAGAGAGCCGCTGCCGC
CGAGAATCTTCCAACGATCAGTGCATCGAACTCCGCCGCCAGTGCCACGA
CAGGATCGGCAGGAGCCGATAGCTTACGAAAGACACCAAAGAAACCGGGC
GCCGAAGAGGATCTGCTCGCGCTCTGAGTGATCTCCGCCAGCACCATCAT
CGGCTCTAATTGTTTACTCTTTCAAATGTTATACACACCCTAACATACTT
ATCCGTAACGTCTATTTGATAGCAGATACATAGTAACACTTTATGTAAAA
TGCTTTTATTTTTTACAAAAACAGCAACGATAACTATTGATTATATTCCA
AAAAAACAAGCGATCTTTTGTTGGTCTAATTGTAAGCCACGTCTACACAT
TGATGGTAATTTAATGTATTACGTTACAAGTCTATTTGTTGTTTATTTAT
ACATACATTATAAAGCTAATTTATTTTACAAAATCGAAAAGAAAAACTAA
AACAAAATGGAAATACATTTCAAGCACATACCGAAAAAAAAAAAAAAAAA
AAA

GH05942.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RB 2172 CG3529-RB 58..2141 1..2084 10420 100 Plus
CG3529.b 1991 CG3529.b 69..1991 162..2084 9615 100 Plus
CG3529.a 2122 CG3529.a 48..1516 1..1469 7345 100 Plus
CG3529.a 2122 CG3529.a 1517..2122 1479..2084 3030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9440776..9441504 614..1342 3615 99.7 Plus
chr3L 24539361 chr3L 9442108..9442661 1530..2083 2755 99.8 Plus
chr3L 24539361 chr3L 9440262..9440715 161..614 2240 99.6 Plus
chr3L 24539361 chr3L 9438779..9438940 1..162 810 100 Plus
chr3L 24539361 chr3L 9441565..9441700 1343..1478 620 97.1 Plus
chr3L 24539361 chr3L 9441894..9441944 1479..1529 255 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:33:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9448900..9449628 614..1342 3645 100 Plus
3L 28110227 3L 9450232..9450786 1530..2084 2775 100 Plus
3L 28110227 3L 9448386..9448839 161..614 2270 100 Plus
3L 28110227 3L 9446901..9447062 1..162 810 100 Plus
3L 28110227 3L 9449689..9449824 1343..1478 680 100 Plus
3L 28110227 3L 9450018..9450068 1479..1529 255 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9442000..9442728 614..1342 3645 100 Plus
3L 28103327 3L 9443332..9443886 1530..2084 2775 100 Plus
3L 28103327 3L 9441486..9441939 161..614 2270 100 Plus
3L 28103327 3L 9440001..9440162 1..162 810 100 Plus
3L 28103327 3L 9442789..9442924 1343..1478 680 100 Plus
3L 28103327 3L 9443118..9443168 1479..1529 255 100 Plus
Blast to na_te.dros performed 2019-03-15 19:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1548..1634 1984..2072 125 64.8 Plus

GH05942.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:56:06 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9438779..9438940 1..162 100 -> Plus
chr3L 9440264..9440715 163..614 99 -> Plus
chr3L 9440777..9441504 615..1342 99 -> Plus
chr3L 9441565..9441700 1343..1478 97 -> Plus
chr3L 9441894..9441944 1479..1529 100 -> Plus
chr3L 9442108..9442661 1530..2083 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:19:37 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 1..1632 96..1727 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:36 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 1..1632 96..1727 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:17 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 1..1632 96..1727 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:32 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 1..1632 96..1727 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:09 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 1..1632 96..1727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:35 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 27..2109 1..2083 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:36 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 27..2109 1..2083 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:17 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 38..2120 1..2083 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:32 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 27..2109 1..2083 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:09 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 38..2120 1..2083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:06 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9446901..9447062 1..162 100 -> Plus
3L 9448388..9448839 163..614 100 -> Plus
3L 9448901..9449628 615..1342 100 -> Plus
3L 9449689..9449824 1343..1478 100 -> Plus
3L 9450018..9450068 1479..1529 100 -> Plus
3L 9450232..9450785 1530..2083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:06 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9446901..9447062 1..162 100 -> Plus
3L 9448388..9448839 163..614 100 -> Plus
3L 9448901..9449628 615..1342 100 -> Plus
3L 9449689..9449824 1343..1478 100 -> Plus
3L 9450018..9450068 1479..1529 100 -> Plus
3L 9450232..9450785 1530..2083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:06 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9446901..9447062 1..162 100 -> Plus
3L 9448388..9448839 163..614 100 -> Plus
3L 9448901..9449628 615..1342 100 -> Plus
3L 9449689..9449824 1343..1478 100 -> Plus
3L 9450018..9450068 1479..1529 100 -> Plus
3L 9450232..9450785 1530..2083 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:17 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9440001..9440162 1..162 100 -> Plus
arm_3L 9441488..9441939 163..614 100 -> Plus
arm_3L 9442001..9442728 615..1342 100 -> Plus
arm_3L 9442789..9442924 1343..1478 100 -> Plus
arm_3L 9443118..9443168 1479..1529 100 -> Plus
arm_3L 9443332..9443885 1530..2083 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:03 Download gff for GH05942.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9440001..9440162 1..162 100 -> Plus
3L 9442789..9442924 1343..1478 100 -> Plus
3L 9443118..9443168 1479..1529 100 -> Plus
3L 9441488..9441939 163..614 100 -> Plus
3L 9442001..9442728 615..1342 100 -> Plus
3L 9443332..9443885 1530..2083 100   Plus

GH05942.pep Sequence

Translation from 95 to 1726

> GH05942.pep
MASFFNVGALGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSD
TARDAMRAIRKRLSQNAGKNNQVVMYTLTVLETCVKNCGKAFHVLVAQKD
FINELVKLIGPKNDPPAAMQEKVLSLIQIWADAFKNQPDLNGVTQMYMEL
KNKGIEFPANDLDAMAPIYTPQRSVPEMPPQLVAAQQHTISPQHMAAAAA
AAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEMLSVLKPGQE
SPDDYALLNELTSTCKEMQSRIVDLIGRVQDDELTAEFLRINDELNNVFL
RHQRYEKNRSQGQGAGVTSPSAVLGAAMGLPGVGAAGAGATTVATLPPPP
TTTAVSNTPQSDQLLIDLIESSEEAQLPQSLGQISLGGGAPIGVQRSARP
ADEFDMLAQSRTDGNHKSDLLRDIPSVDAAAGSVTATASPYKPNQPQQAQ
RSAGEPPVVSKSTKENEIDEMEAWLGSSHIEGIEELTSSEFDKFLEERAA
AAENLPTISASNSAASATTGSAGADSLRKTPKKPGAEEDLLAL*

GH05942.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25134-PA 529 GF25134-PA 1..529 1..543 2375 89.7 Plus
Dana\GF15830-PA 700 GF15830-PA 1..144 7..157 203 27.6 Plus
Dana\GF13888-PA 763 GF13888-PA 1..149 13..165 190 30.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15377-PA 541 GG15377-PA 1..541 1..543 2778 97.4 Plus
Dere\GG23682-PA 687 GG23682-PA 1..144 7..157 205 28.3 Plus
Dere\GG24878-PA 762 GG24878-PA 1..149 13..165 187 30.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15236-PA 565 GH15236-PA 1..565 1..543 2159 77.9 Plus
Dgri\GH13592-PA 742 GH13592-PA 1..144 7..157 252 32.2 Plus
Dgri\GH11165-PA 738 GH11165-PA 1..149 13..165 177 30.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-PB 543 CG3529-PB 1..543 1..543 2735 100 Plus
CG3529-PD 540 CG3529-PD 1..540 1..543 2708 99.4 Plus
CG3529-PC 526 CG3529-PC 1..526 1..543 2619 96.9 Plus
Stam-PA 689 CG6521-PA 7..173 15..187 200 27 Plus
Hrs-PC 760 CG2903-PC 1..149 13..165 177 30.5 Plus
Hrs-PB 760 CG2903-PB 1..149 13..165 177 30.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11944-PA 546 GI11944-PA 1..546 1..543 2109 78.7 Plus
Dmoj\GI23591-PA 725 GI23591-PA 14..144 22..157 232 32.1 Plus
Dmoj\GI17877-PA 750 GI17877-PA 1..149 13..165 186 30.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17879-PA 467 GL17879-PA 1..393 1..389 1714 86.9 Plus
Dper\GL19123-PA 683 GL19123-PA 14..144 22..157 217 29.9 Plus
Dper\GL26577-PA 765 GL26577-PA 1..149 13..165 181 30.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17503-PA 552 GA17503-PA 1..552 1..543 2232 83.2 Plus
Dpse\GA19660-PA 683 GA19660-PA 14..144 22..157 221 29.9 Plus
Dpse\GA15506-PA 748 GA15506-PA 1..149 13..165 192 30.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25149-PA 536 GM25149-PA 1..536 1..543 2781 97.8 Plus
Dsec\GM18758-PA 692 GM18758-PA 1..144 7..157 207 28.3 Plus
Dsec\GM18359-PA 747 GM18359-PA 1..149 13..165 188 30.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14183-PA 532 GD14183-PA 1..532 10..543 2765 98.3 Plus
Dsim\GD23740-PA 690 GD23740-PA 1..144 7..157 207 28.3 Plus
Dsim\GD23175-PA 759 GD23175-PA 1..149 13..165 188 30.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12170-PA 552 GJ12170-PA 1..552 1..543 2133 81 Plus
Dvir\GJ20786-PA 721 GJ20786-PA 1..144 7..157 247 32.2 Plus
Dvir\GJ17377-PA 734 GJ17377-PA 1..149 13..165 184 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17578-PA 561 GK17578-PA 1..561 1..543 2016 73.6 Plus
Dwil\GK18440-PA 711 GK18440-PA 14..147 22..157 198 29.5 Plus
Dwil\GK24576-PA 738 GK24576-PA 1..149 13..165 184 30.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20841-PA 541 GE20841-PA 1..541 1..543 2788 97.6 Plus
Dyak\GE18494-PA 689 GE18494-PA 1..144 7..157 213 28.9 Plus
Dyak\GE18175-PA 765 GE18175-PA 1..149 13..165 188 30.5 Plus

GH05942.hyp Sequence

Translation from 95 to 1726

> GH05942.hyp
MASFFNVGALGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSD
TARDAMRAIRKRLSQNAGKNNQVVMYTLTVLETCVKNCGKAFHVLVAQKD
FINELVKLIGPKNDPPAAMQEKVLSLIQIWADAFKNQPDLNGVTQMYMEL
KNKGIEFPANDLDAMAPIYTPQRSVPEMPPQLVAAQQHTISPQHMAAAAA
AAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEMLSVLKPGQE
SPDDYALLNELTSTCKEMQSRIVDLIGRVQDDELTAEFLRINDELNNVFL
RHQRYEKNRSQGQGAGVTSPSAVLGAAMGLPGVGAAGAGATTVATLPPPP
TTTAVSNTPQSDQLLIDLIESSEEAQLPQSLGQISLGGGAPIGVQRSARP
ADEFDMLAQSRTDGNHKSDLLRDIPSVDAAAGSVTATASPYKPNQPQQAQ
RSAGEPPVVSKSTKENEIDEMEAWLGSSHIEGIEELTSSEFDKFLEERAA
AAENLPTISASNSAASATTGSAGADSLRKTPKKPGAEEDLLAL*

GH05942.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-PB 543 CG3529-PB 1..543 1..543 2735 100 Plus
CG3529-PD 540 CG3529-PD 1..540 1..543 2708 99.4 Plus
CG3529-PC 526 CG3529-PC 1..526 1..543 2619 96.9 Plus
Stam-PA 689 CG6521-PA 7..173 15..187 200 27 Plus
Hrs-PC 760 CG2903-PC 1..149 13..165 177 30.5 Plus