BDGP Sequence Production Resources |
Search the DGRC for GH06023
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 60 |
Well: | 23 |
Vector: | pOT2 |
Associated Gene/Transcript | Rpp30-RA |
Protein status: | GH06023.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 945 |
Gene | Date | Evidence |
---|---|---|
CG11606 | 2001-01-01 | Release 2 assignment |
CG11606 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11606 | 2003-02-17 | Blastp of sequenced clone |
Rpp30 | 2008-04-29 | Release 5.5 accounting |
Rpp30 | 2008-08-15 | Release 5.9 accounting |
Rpp30 | 2008-12-18 | 5.12 accounting |
945 bp (945 high quality bases) assembled on 2003-02-17
GenBank Submission: AY075315
> GH06023.complete AAATGGAGCAAACAAGGCCATTTTACGATTTCAGCATACCATACAACAAG GACGACTCCGTGTTGCGGGCCCTGCTTAACGAGCTGGTGGAAACGGGCTA CAAAACAGTGGCCATCGACCAGAGTTTCGACCACAGCAAAAAGGATCCGG GCAAACGTGGGTCCGAGATGTTTCCCGAGCCTCATAAGATCGAGCATCTG CGCAAGGAGTTCCAGGACAAGCTGAGAATCCTGCAGAGAATCACCATTCT CTACGTAGACGTCAATGTGGCCCACGCGATGAGTGTCTCCCATAATCTGC GGAAGTTCAATCTCATCGCTGGCCAACCGAAAACAGATGCCGCCCTGACG CACTGCTGCACTGCCTTCAATGGGGACTTGATAACTTTTGATCCTGTGGC TGGGTCCCGACTCTTGGTAAACCGAAAAGCATACCAGGTGGCAGTCCGTC GGGGCATGTTCTTCGAAATTAAATACGCTCCATCTATCTGCGATTCGAAT AACAGGAAGGACATGATAAAGATCGCCCAGAACTATTGCACCAAAGGGAA GTCCAAGAACGTTATCTTCAGCAGTGGTGCGGCGCACGAATTCCAGCTGA GAGGACCTTACGACGTTGCTAATTTGGCCTTTATCTTCGGCCTATCAGAG GACCAAGGGAAAAATGCTGTGGACGGGCACTGCCGGGAACTTTTCCTGAA GGCTGAGGCGCGTCGTCTGGGAAAAACCATCATGTTTCTCAAAGGAAACG GTCCCATAATATACTCGGATAGCTCTGAGGACGAGAAAAGCACCGAAGAC GAAATGAAGGGTCTAAAACCGCAAATTGGAAAAGCGGATGCATTTGAAGT CAAAGACGGAACTGAGCACGCTATTAAACGACTTAAAGTGGCGTAGCCTT TAACTAAAATACATCAGCTTTTTTAATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 251195..251496 | 927..626 | 1510 | 100 | Minus |
chr2L | 23010047 | chr2L | 251558..251834 | 626..350 | 1385 | 100 | Minus |
chr2L | 23010047 | chr2L | 252011..252198 | 281..94 | 940 | 100 | Minus |
chr2L | 23010047 | chr2L | 252259..252351 | 93..1 | 465 | 100 | Minus |
chr2L | 23010047 | chr2L | 251888..251957 | 350..281 | 350 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 251161..251464 | 929..626 | 1520 | 100 | Minus |
2L | 23513712 | 2L | 251526..251802 | 626..350 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 251979..252166 | 281..94 | 940 | 100 | Minus |
2L | 23513712 | 2L | 252227..252319 | 93..1 | 465 | 100 | Minus |
2L | 23513712 | 2L | 251856..251925 | 350..281 | 350 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 251161..251464 | 929..626 | 1520 | 100 | Minus |
2L | 23513712 | 2L | 251526..251802 | 626..350 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 251979..252166 | 281..94 | 940 | 100 | Minus |
2L | 23513712 | 2L | 252227..252319 | 93..1 | 465 | 100 | Minus |
2L | 23513712 | 2L | 251856..251925 | 350..281 | 350 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 251888..251956 | 282..350 | 100 | <- | Minus |
chr2L | 252011..252198 | 94..281 | 100 | <- | Minus |
chr2L | 252259..252351 | 1..93 | 100 | Minus | |
chr2L | 251195..251496 | 626..927 | 100 | <- | Minus |
chr2L | 251559..251833 | 351..625 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 1..894 | 3..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 1..894 | 3..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 1..894 | 3..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 1..894 | 3..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 1..894 | 3..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 13..939 | 1..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 13..939 | 1..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 55..981 | 1..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 13..939 | 1..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpp30-RA | 55..981 | 1..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 251979..252166 | 94..281 | 100 | <- | Minus |
2L | 252227..252319 | 1..93 | 100 | Minus | |
2L | 251163..251464 | 626..927 | 100 | <- | Minus |
2L | 251527..251801 | 351..625 | 100 | <- | Minus |
2L | 251856..251924 | 282..350 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 251979..252166 | 94..281 | 100 | <- | Minus |
2L | 252227..252319 | 1..93 | 100 | Minus | |
2L | 251163..251464 | 626..927 | 100 | <- | Minus |
2L | 251527..251801 | 351..625 | 100 | <- | Minus |
2L | 251856..251924 | 282..350 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 251979..252166 | 94..281 | 100 | <- | Minus |
2L | 252227..252319 | 1..93 | 100 | Minus | |
2L | 251163..251464 | 626..927 | 100 | <- | Minus |
2L | 251527..251801 | 351..625 | 100 | <- | Minus |
2L | 251856..251924 | 282..350 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 251163..251464 | 626..927 | 100 | <- | Minus |
arm_2L | 251527..251801 | 351..625 | 100 | <- | Minus |
arm_2L | 251856..251924 | 282..350 | 100 | <- | Minus |
arm_2L | 251979..252166 | 94..281 | 100 | <- | Minus |
arm_2L | 252227..252319 | 1..93 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 251163..251464 | 626..927 | 100 | <- | Minus |
2L | 251527..251801 | 351..625 | 100 | <- | Minus |
2L | 251856..251924 | 282..350 | 100 | <- | Minus |
2L | 251979..252166 | 94..281 | 100 | <- | Minus |
2L | 252227..252319 | 1..93 | 100 | Minus |
Translation from 2 to 895
> GH06023.hyp MEQTRPFYDFSIPYNKDDSVLRALLNELVETGYKTVAIDQSFDHSKKDPG KRGSEMFPEPHKIEHLRKEFQDKLRILQRITILYVDVNVAHAMSVSHNLR KFNLIAGQPKTDAALTHCCTAFNGDLITFDPVAGSRLLVNRKAYQVAVRR GMFFEIKYAPSICDSNNRKDMIKIAQNYCTKGKSKNVIFSSGAAHEFQLR GPYDVANLAFIFGLSEDQGKNAVDGHCRELFLKAEARRLGKTIMFLKGNG PIIYSDSSEDEKSTEDEMKGLKPQIGKADAFEVKDGTEHAIKRLKVA*
Translation from 2 to 895
> GH06023.pep MEQTRPFYDFSIPYNKDDSVLRALLNELVETGYKTVAIDQSFDHSKKDPG KRGSEMFPEPHKIEHLRKEFQDKLRILQRITILYVDVNVAHAMSVSHNLR KFNLIAGQPKTDAALTHCCTAFNGDLITFDPVAGSRLLVNRKAYQVAVRR GMFFEIKYAPSICDSNNRKDMIKIAQNYCTKGKSKNVIFSSGAAHEFQLR GPYDVANLAFIFGLSEDQGKNAVDGHCRELFLKAEARRLGKTIMFLKGNG PIIYSDSSEDEKSTEDEMKGLKPQIGKADAFEVKDGTEHAIKRLKVA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24493-PA | 289 | GF24493-PA | 1..288 | 1..296 | 1291 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24670-PA | 290 | GG24670-PA | 1..290 | 1..297 | 1421 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10227-PA | 289 | GH10227-PA | 1..289 | 1..297 | 1171 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpp30-PB | 297 | CG11606-PB | 1..297 | 1..297 | 1543 | 100 | Plus |
Rpp30-PA | 297 | CG11606-PA | 1..297 | 1..297 | 1543 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15104-PA | 297 | GI15104-PA | 1..297 | 1..297 | 1166 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25831-PA | 296 | GL25831-PA | 1..296 | 1..297 | 1240 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11094-PA | 296 | GA11094-PA | 1..296 | 1..297 | 1244 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16689-PA | 298 | GM16689-PA | 1..298 | 1..297 | 1523 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22976-PA | 298 | GD22976-PA | 1..298 | 1..297 | 1525 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17249-PA | 297 | GJ17249-PA | 1..297 | 1..297 | 1253 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18180-PA | 287 | GK18180-PA | 1..266 | 1..266 | 1213 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16338-PA | 298 | GE16338-PA | 1..298 | 1..297 | 1453 | 89.6 | Plus |