Clone GH06048 Report

Search the DGRC for GH06048

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:60
Well:48
Vector:pOT2
Associated Gene/TranscriptPeb-RA
Protein status:GH06048.pep: gold
Preliminary Size:1293
Sequenced Size:1201

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2668 2000-02-14 Blastp of sequenced clone
CG2668 2001-01-01 Release 2 assignment
CG2668 2003-01-01 Sim4 clustering to Release 3
Peb 2008-04-29 Release 5.5 accounting
Peb 2008-08-15 Release 5.9 accounting
Peb 2008-12-18 5.12 accounting

Clone Sequence Records

GH06048.complete Sequence

1201 bp (1201 high quality bases) assembled on 2000-02-14

GenBank Submission: AF184225

> GH06048.complete
CTATGGTGCGACAATTGATACTCGTCCTTTCTCTGATTCTCTTCTGCGGC
AGCTCACATGCTGTTGTCAGTGAATTGGCCCGTCAGAGCGAGTCTGCCAT
CCAGGGTTTGGCAGACATAAAGATGGCGCCTCTACGTTACTTAGATGTTC
TCTTTGGTGGAAATCCCGGAGGACTTCGGGGTCTAGACGGTGGAAATTCA
GCATCTTTATCAACCTTACAAGCAGCTAAAGTAGCAAATATATTGGCAAG
AGGTGATATCGCCAGTTCCGGATATAGTAAAATTTCAGCTGGCGTTGGCA
AGGGAAGCGACCTAATCACTATTATTAAGAACACTCGATCCTACGATCCG
TACCTTATTCCACCAGGTATTCCTGGCTATAATTATCCACTTGGATGGCC
CCTTCGTTATCCATTAGGTCCTTATTGGCCTAATCGACCACCATGGCTAC
CAATTAATTCTCCACCGATACGTCCAGGTGGACTTTTCCCTGGTGGACCT
TCCCCTGGTGGACCTTCCCCTGGTGAACCTTCACCTGGTGAACCTTCACC
TGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTG
GGCCATCCCCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGGACCT
TTCCCTGGTGGATCTCCACCTTCACCAGGCGGACCACTTGGACCATGGCA
ATTTCCATGGATACTAGGTGGTCCTCGGCCGAACCGTCCAGGAAGACCTT
TCCCTGGTGGTATCCTTCCTGGTCATTTAGACGGTTCGGTAGTTCCAAAT
AGTGTGCTAAATGTTGCTGGCGGAATCTTTGGAAACGGTGGACTGTTCGG
TACGGGAATTTTCGGACAACATGGACTTTTCGGAACTGGATTTCTTAGTG
GACCTTCGTTAGACCCCTTTGGCATTTTTACTCCAATCGGAAATTTCTTT
GGATCACTAGGAAACTTATTCGGATTTAGTTCACCTAGTCAAATTATTCC
AATCTTTGGTGGGAAATTTGGTCCTTTAGGTCGCGGATTGCAGGGGTCTA
TCACCTTGGATGTTGGCGGCACAGTGCCATCGGTAAAAGGCATATTAGGA
CAACTTTTGCATCCTTTCCTCGGATTTCTGGGATAGTATCGAGGAATCGA
GTCCTGCAATAAACAATGAACCTGGTTGCTTAAAAAAAAAAAAAAAAAAA
A

GH06048.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RA 1449 Peb-RA 34..1216 1..1183 5915 100 Plus
nc_9423.b 725 nc_9423.b 231..725 511..17 2460 99.7 Minus
nc_9423.a 806 nc_9423.a 115..553 1183..745 2195 100 Minus
nc_9423.a 806 nc_9423.a 538..806 511..243 1330 99.6 Minus
nc_9423.b 725 nc_9423.b 1..246 990..745 1230 100 Minus
nc_9423.b 725 nc_9423.b 231..265 661..627 145 94.2 Minus
nc_9423.a 806 nc_9423.a 538..572 661..627 145 94.2 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 21061351..21062533 1181..17 5565 98.2 Minus
chr2R 21145070 chr2R 21061870..21061998 617..489 480 91.5 Minus
chr2R 21145070 chr2R 21061871..21061983 601..489 460 93.8 Minus
chr2R 21145070 chr2R 21061870..21061980 587..477 420 91.9 Minus
chr2R 21145070 chr2R 21061870..21061965 572..477 345 90.6 Minus
chr2R 21145070 chr2R 21061870..21061950 557..477 270 88.9 Minus
chr2R 21145070 chr2R 21061872..21061924 540..488 220 94.3 Minus
chr2R 21145070 chr2R 21061872..21061920 525..477 200 93.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25175451..25176617 1183..17 5835 100 Minus
2R 25286936 2R 25175972..25176100 617..489 480 91.5 Minus
2R 25286936 2R 25175973..25176085 601..489 460 93.8 Minus
2R 25286936 2R 25175972..25176082 587..477 420 91.9 Minus
2R 25286936 2R 25175972..25176067 572..477 345 90.6 Minus
2R 25286936 2R 25175972..25176052 557..477 270 88.9 Minus
2R 25286936 2R 25175963..25176026 551..488 230 90.6 Minus
2R 25286936 2R 25175963..25176022 536..477 210 90 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 25176650..25177816 1183..17 5835 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:17:30 has no hits.

GH06048.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:18:14 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 21061351..21062532 18..1181 98 <- Minus
chr2R 21062594..21062610 1..17 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:19:53 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 1..1134 3..1136 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:36 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 1..1134 3..1136 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:18:54 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 1..1134 3..1136 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:08:04 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 1..1134 3..1136 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:04:13 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 1..1134 3..1136 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:35:47 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 22..1202 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:36 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 22..1202 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:18:54 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 22..1202 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:08:04 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 22..1202 1..1181 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:04:13 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 22..1202 1..1181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:14 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25176678..25176694 1..17 100   Minus
2R 25175453..25176616 18..1181 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:14 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25176678..25176694 1..17 100   Minus
2R 25175453..25176616 18..1181 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:14 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25176678..25176694 1..17 100   Minus
2R 25175453..25176616 18..1181 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:18:54 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21062976..21064139 18..1181 100 <- Minus
arm_2R 21064201..21064217 1..17 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:45:40 Download gff for GH06048.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25176670..25177833 18..1181 100 <- Minus
2R 25177895..25177911 1..17 100   Minus

GH06048.pep Sequence

Translation from 2 to 1135

> GH06048.pep
MVRQLILVLSLILFCGSSHAVVSELARQSESAIQGLADIKMAPLRYLDVL
FGGNPGGLRGLDGGNSASLSTLQAAKVANILARGDIASSGYSKISAGVGK
GSDLITIIKNTRSYDPYLIPPGIPGYNYPLGWPLRYPLGPYWPNRPPWLP
INSPPIRPGGLFPGGPSPGGPSPGEPSPGEPSPGGPSPGGPSPGGPSPGG
PSPGGPSPGGPSPGGPFPGGSPPSPGGPLGPWQFPWILGGPRPNRPGRPF
PGGILPGHLDGSVVPNSVLNVAGGIFGNGGLFGTGIFGQHGLFGTGFLSG
PSLDPFGIFTPIGNFFGSLGNLFGFSSPSQIIPIFGGKFGPLGRGLQGSI
TLDVGGTVPSVKGILGQLLHPFLGFLG*

GH06048.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11506-PA 345 GF11506-PA 1..144 1..134 357 61.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19857-PA 447 GG19857-PA 317..447 234..377 384 72.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Ebp-PB 377 CG2668-PB 1..377 1..377 2062 100 Plus
Ebp-PA 377 CG2668-PA 1..377 1..377 2062 100 Plus
frm-PD 268 CG10625-PD 115..258 119..266 221 42.7 Plus
frm-PA 268 CG10625-PA 115..258 119..266 221 42.7 Plus
frm-PE 652 CG10625-PE 499..642 119..266 221 42.7 Plus
frm-PB 682 CG10625-PB 529..672 119..266 221 42.7 Plus
frm-PC 682 CG10625-PC 529..672 119..266 221 42.7 Plus
frm-PJ 752 CG10625-PJ 115..258 119..266 221 42.7 Plus
frm-PI 766 CG10625-PI 115..258 119..266 221 42.7 Plus
frm-PH 1180 CG10625-PH 529..672 119..266 221 42.7 Plus
frm-PE 652 CG10625-PE 457..588 128..251 195 40.7 Plus
frm-PD 268 CG10625-PD 84..204 139..251 194 42.6 Plus
frm-PA 268 CG10625-PA 84..204 139..251 194 42.6 Plus
frm-PB 682 CG10625-PB 498..618 139..251 194 42.6 Plus
frm-PC 682 CG10625-PC 498..618 139..251 194 42.6 Plus
frm-PJ 752 CG10625-PJ 84..204 139..251 194 42.6 Plus
frm-PI 766 CG10625-PI 84..204 139..251 194 42.6 Plus
frm-PH 1180 CG10625-PH 498..618 139..251 194 42.6 Plus
lcs-PA 145 CG12794-PA 21..102 158..245 189 55.4 Plus
frm-PJ 752 CG10625-PJ 144..263 120..229 186 43.5 Plus
frm-PI 766 CG10625-PI 144..263 120..229 186 43.5 Plus
frm-PH 1180 CG10625-PH 558..677 120..229 186 43.5 Plus
Mur82C-PB 578 CG12586-PB 400..476 157..231 180 58.1 Plus
frm-PJ 752 CG10625-PJ 164..267 120..223 173 43.2 Plus
frm-PI 766 CG10625-PI 164..267 120..223 173 43.2 Plus
frm-PH 1180 CG10625-PH 578..681 120..223 173 43.2 Plus
Cpr47Ef-PC 612 CG13214-PC 478..602 159..279 173 44.2 Plus
frm-PD 268 CG10625-PD 164..265 120..227 172 42.2 Plus
frm-PA 268 CG10625-PA 164..265 120..227 172 42.2 Plus
frm-PE 652 CG10625-PE 548..649 120..227 172 42.2 Plus
frm-PB 682 CG10625-PB 578..679 120..227 172 42.2 Plus
frm-PC 682 CG10625-PC 578..679 120..227 172 42.2 Plus
Cpr47Ef-PD 601 CG13214-PD 460..591 153..279 169 42.2 Plus
frm-PE 652 CG10625-PE 457..570 142..253 168 44.1 Plus
ena-PG 664 CG15112-PG 339..514 119..283 166 31.2 Plus
ena-PE 684 CG15112-PE 359..534 119..283 166 31.2 Plus
ena-PC 684 CG15112-PC 359..534 119..283 166 31.2 Plus
ena-PA 684 CG15112-PA 359..534 119..283 166 31.2 Plus
ena-PD 687 CG15112-PD 362..537 119..283 166 31.2 Plus
ena-PB 834 CG15112-PB 508..683 119..283 166 31.2 Plus
ena-PF 980 CG15112-PF 655..830 119..283 166 31.2 Plus
lcs-PA 145 CG12794-PA 26..99 155..222 163 57.9 Plus
Sec24CD-PA 1193 CG10882-PA 261..394 119..252 163 39.2 Plus
Sec24CD-PB 1193 CG10882-PB 261..394 119..252 163 39.2 Plus
Sec24CD-PC 1231 CG10882-PC 261..394 119..252 163 39.2 Plus
lcs-PA 145 CG12794-PA 20..97 165..253 162 47.3 Plus
scramb1-PA 416 CG32056-PA 32..172 120..257 162 37.2 Plus
Mur82C-PB 578 CG12586-PB 399..473 179..249 159 54.9 Plus
CG11581-PB 334 CG11581-PB 61..287 119..341 159 33.6 Plus
CG11581-PA 334 CG11581-PA 61..287 119..341 159 33.6 Plus
CG15021-PA 420 CG15021-PA 189..325 116..252 159 34.2 Plus
CG11581-PB 334 CG11581-PB 55..226 150..306 157 32.8 Plus
CG11581-PA 334 CG11581-PA 55..226 150..306 157 32.8 Plus
CG15021-PA 420 CG15021-PA 103..287 120..265 157 32.8 Plus
dia-PE 1091 CG1768-PE 503..603 143..245 157 41.5 Plus
dia-PB 1091 CG1768-PB 503..603 143..245 157 41.5 Plus
dia-PA 1091 CG1768-PA 503..603 143..245 157 41.5 Plus
dia-PD 1098 CG1768-PD 510..610 143..245 157 41.5 Plus
CG7924-PA 321 CG7924-PA 83..204 108..225 154 37.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16826-PA 369 GL16826-PA 16..114 16..129 232 54.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15417-PA 369 GA15417-PA 16..114 16..129 238 55.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11761-PA 203 GM11761-PA 1..99 41..129 342 76.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24894-PA 246 GD24894-PA 1..110 1..101 454 87.3 Plus

GH06048.hyp Sequence

Translation from 2 to 1135

> GH06048.hyp
MVRQLILVLSLILFCGSSHAVVSELARQSESAIQGLADIKMAPLRYLDVL
FGGNPGGLRGLDGGNSASLSTLQAAKVANILARGDIASSGYSKISAGVGK
GSDLITIIKNTRSYDPYLIPPGIPGYNYPLGWPLRYPLGPYWPNRPPWLP
INSPPIRPGGLFPGGPSPGGPSPGEPSPGEPSPGGPSPGGPSPGGPSPGG
PSPGGPSPGGPSPGGPFPGGSPPSPGGPLGPWQFPWILGGPRPNRPGRPF
PGGILPGHLDGSVVPNSVLNVAGGIFGNGGLFGTGIFGQHGLFGTGFLSG
PSLDPFGIFTPIGNFFGSLGNLFGFSSPSQIIPIFGGKFGPLGRGLQGSI
TLDVGGTVPSVKGILGQLLHPFLGFLG*

GH06048.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-PB 377 CG2668-PB 1..377 1..377 2062 100 Plus
Peb-PA 377 CG2668-PA 1..377 1..377 2062 100 Plus
CG10625-PD 268 CG10625-PD 115..258 119..266 221 42.7 Plus
CG10625-PA 268 CG10625-PA 115..258 119..266 221 42.7 Plus
CG10625-PE 652 CG10625-PE 499..642 119..266 221 42.7 Plus
CG10625-PD 268 CG10625-PD 84..204 139..251 194 42.6 Plus
CG10625-PA 268 CG10625-PA 84..204 139..251 194 42.6 Plus
CG10625-PD 268 CG10625-PD 164..265 120..227 172 42.2 Plus
CG10625-PA 268 CG10625-PA 164..265 120..227 172 42.2 Plus