Clone GH06180 Report

Search the DGRC for GH06180

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:61
Well:80
Vector:pOT2
Associated Gene/TranscripteIF-2alpha-RA
Protein status:GH06180.pep: gold
Preliminary Size:1257
Sequenced Size:1217

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9946 2000-02-14 Blastp of sequenced clone
CG9946 2001-01-01 Release 2 assignment
CG9946 2003-01-01 Sim4 clustering to Release 3
eIF-2alpha 2008-04-29 Release 5.5 accounting
eIF-2alpha 2008-08-15 Release 5.9 accounting
eIF-2alpha 2008-12-18 5.12 accounting

Clone Sequence Records

GH06180.complete Sequence

1217 bp (1217 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145633

> GH06180.complete
CTTCTTCTTGCGCCCGCTCGGCAGAAATTGTACACGTTTTTCATTTCGAA
AAGTCCAAATTGCCCATTTTTTGGCCATAGACCACAGACTTTAACATGGC
CCTGACGTCGCGCTTCTACAACGAGCGGTATCCGGAGATCGAGGATGTCG
TTATGGTGAACGTGCTGTCCATCGCCGAGATGGGCGCCTACGTTCATCTG
CTTGAGTACAACAACATCGAGGGCATGATCCTGCTGTCGGAGCTGTCCCG
CCGGCGCATCCGCTCCATCAACAAGCTGATTCGTGTCGGCAAGACCGAAC
CGGTGGTGGTTATCCGTGTTGACAAGGAGAAGGGCTACATCGATCTGTCG
AAGCGTCGCGTTTCGCCCGAAGATGTCGAGAAGTGCACCGAGCGCTTCGC
TAAGGCCAAGGCCATCAACTCACTGCTCCGCCATGTCGCCGACATACTCG
GCTTCGAGGGCAACGAGAAGCTGGAAGATCTCTACCAGAAGACCGCCTGG
CACTTCGAGAAGAAGTACAACAACAAGACGGTCGCCTACGACATCTTCAA
GCAATCGGTCACCGATCCCACCGTCTTCGATGAGTGCAACCTGGAACCGG
AGACCAAGGAGGTCCTGTTGAGCAACATCAAGCGGAAGCTGGTCTCGCCC
ACTGTCAAGATCCGTGCGGACATCGAGTGCTCCTGCTACGGTTACGAGGG
CATCGACGCTGTCAAGGCATCGCTCACCAAGGGCCTGGAGCTGAGCACCG
AGGAGCTGCCCATTCGCATCAACCTGATAGCACCGCCACTCTATGTAATG
ACCACATCCACTACCAAGAAGACAGACGGTTTAAAGGCTCTGGAGGTGGC
CATTGAGCACATTCGCGCCAAGACCAGCGAGTACGATGGAGAGTTCAAGG
TGATCATGGCACCCAAACTGGTTACGGCCATCGACGAGGCGGATCTGGCC
AGACGCCTGGAGCGCGCTGAGGCCGAGAACGCCCAGGTGGCTGGCGACGA
TGACGAGGAGGATGGCGCCGACCAGGAGGGCATGCAGTTCGATCCAGAGA
AGGAGTTCAACCACAAGGGATCGGGGGCGGGTCGTGCGAACGAGGAGGAT
GAGGAGGAGGAAGAGGATTAGCGTAGCCACAGCATCAGACACAACTATAG
CAACTGTAACAAACAATTAAAGGAGTTTTGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

GH06180.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2alpha-RA 1603 eIF-2alpha-RA 244..1429 1..1186 5930 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16335893..16336689 797..1 3955 99.7 Minus
chrX 22417052 chrX 16335210..16335600 1181..791 1955 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16446178..16446974 797..1 3955 99.7 Minus
X 23542271 X 16445490..16445885 1186..791 1980 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16454276..16455072 797..1 3955 99.7 Minus
X 23527363 X 16453588..16453983 1186..791 1980 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:12:57 has no hits.

GH06180.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:14:06 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16335210..16335600 791..1181 93 <- Minus
chrX 16335900..16336689 1..790 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:03 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1026 96..1121 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:58 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1026 96..1121 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:04:15 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1026 96..1121 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:08:30 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1026 96..1121 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:22:33 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1026 96..1121 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:36:17 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1181 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:58 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1181 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:04:15 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 20..1200 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:08:30 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1181 1..1181 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:22:33 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 20..1200 1..1181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:06 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
X 16446185..16446974 1..790 100   Minus
X 16445495..16445885 791..1181 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:06 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
X 16446185..16446974 1..790 100   Minus
X 16445495..16445885 791..1181 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:06 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
X 16446185..16446974 1..790 100   Minus
X 16445495..16445885 791..1181 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:04:15 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16339528..16339918 791..1181 100 <- Minus
arm_X 16340218..16341007 1..790 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:46:04 Download gff for GH06180.complete
Subject Subject Range Query Range Percent Splice Strand
X 16453593..16453983 791..1181 100 <- Minus
X 16454283..16455072 1..790 100   Minus

GH06180.pep Sequence

Translation from 95 to 1120

> GH06180.pep
MALTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSEL
SRRRIRSINKLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTER
FAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDI
FKQSVTDPTVFDECNLEPETKEVLLSNIKRKLVSPTVKIRADIECSCYGY
EGIDAVKASLTKGLELSTEELPIRINLIAPPLYVMTTSTTKKTDGLKALE
VAIEHIRAKTSEYDGEFKVIMAPKLVTAIDEADLARRLERAEAENAQVAG
DDDEEDGADQEGMQFDPEKEFNHKGSGAGRANEEDEEEEED*

GH06180.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19374-PA 347 GF19374-PA 1..338 1..332 1569 92.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19321-PA 341 GG19321-PA 1..341 1..341 1745 97.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2alpha-PB 341 CG9946-PB 1..341 1..341 1731 100 Plus
eIF2alpha-PA 341 CG9946-PA 1..341 1..341 1731 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21763-PA 342 GI21763-PA 1..328 1..328 1580 93.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20268-PA 344 GL20268-PA 1..328 1..328 1604 95.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22144-PA 344 GA22144-PA 1..328 1..328 1604 95.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13399-PA 341 GM13399-PA 1..341 1..341 1783 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15749-PA 341 GD15749-PA 1..341 1..341 1789 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19141-PA 342 GJ19141-PA 1..331 1..332 1577 93.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25248-PA 345 GK25248-PA 1..332 1..332 1532 91.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15968-PA 342 GE15968-PA 1..341 1..341 1740 96.8 Plus

GH06180.hyp Sequence

Translation from 95 to 1120

> GH06180.hyp
MALTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSEL
SRRRIRSINKLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTER
FAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDI
FKQSVTDPTVFDECNLEPETKEVLLSNIKRKLVSPTVKIRADIECSCYGY
EGIDAVKASLTKGLELSTEELPIRINLIAPPLYVMTTSTTKKTDGLKALE
VAIEHIRAKTSEYDGEFKVIMAPKLVTAIDEADLARRLERAEAENAQVAG
DDDEEDGADQEGMQFDPEKEFNHKGSGAGRANEEDEEEEED*

GH06180.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2alpha-PB 341 CG9946-PB 1..341 1..341 1731 100 Plus
eIF-2alpha-PA 341 CG9946-PA 1..341 1..341 1731 100 Plus