BDGP Sequence Production Resources |
Search the DGRC for GH06230
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 62 |
Well: | 30 |
Vector: | pOT2 |
Associated Gene/Transcript | Lsd-2-RA |
Protein status: | GH06230.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 2148 |
Gene | Date | Evidence |
---|---|---|
CG9057 | 2001-01-01 | Release 2 assignment |
CG9057 | 2001-07-04 | Blastp of sequenced clone |
CG9057 | 2003-01-01 | Sim4 clustering to Release 3 |
Lsd-2 | 2008-04-29 | Release 5.5 accounting |
Lsd-2 | 2008-08-15 | Release 5.9 accounting |
Lsd-2 | 2008-12-18 | 5.12 accounting |
2148 bp (2148 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060242
> GH06230.complete CCCAACGAGCAGACGTGAGCAGACGTGCCAAAAAGTGCTAGGAATAAAAT AAAACAGAGTGCTTCCAGAACGCAGACACACGCATACCCTACATTCACAC ACTCACTCGCAGGTTAAGCTGTTTTTTTGTTCGTGAAAGAAAAGAAGCAA GAGGCGAAAAGAAAAGTGCGGTGGCAAGCGGAAGAGCTTGATAGCGAAAG ACAGAAAGAAAAAGTGAAAAGGGCAGCAGAAAGCAGCGCAAGAGGAACCA AAGAAAACTGATCATGGCCAGTGCAGAGCAGAAACACGCCACCGGGAACG GAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAGGAT GCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAAATT GCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCAAAG TAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAGGAT TGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACTGGA CCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATAAGC TTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTACAAC CAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCGCGT CGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGGATC TCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGTCTG GCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCTTGA ATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATGATA AACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATGCCA GTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGGACG GCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGACAGA TCAAGCAGGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTGATA GCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGATGGG CACGAATGTGGAGCAGTCTGGTGGCAGCAGCAGTGACGCCTGTTCGCCAT TTGGAACCACCACTAGCACCACTACCACCACTACCACCAGCTCCACCAGC AACAACAAGCCCGTTGTTGCCTTGCCACATGTGGCCAAAAGCAAACGGGC GCCGGCGGTGTCGTCTCAGTAGTGGAGAAACAGCAGCTCATCTACAATTA TATCTATCTATAGCTAGATATTATCCTCTTTCACGCACGCTCACCACCTA AGATACCCCTCTACCTACCACCCACGCCGCCCATTTTATAATGTATTTTA TAAATTCTTTTTTTTTTTTATTGCGTACTATTTCATTGAGTGTACTAGCC GATACGAGTAGTACTTCCATAGAGGATCATTTAAAGTGGAGAAGGTTATT CGAACGCACGCCCAAGAAGTCCGCCTCCTCCTGCGCCACCTGCTTTGTAA ATATTTATTTGAAGTATAGCCCTCACCAATCCTAGTTATAAGATATAGTA GTCGCAGAGATCCGGGAGTCAGAAGAGAGCGTTTTTTTTTCGTCAATTTT AGCTGTGCTAAAGTGCCACGCATGCATTGAATAATACATTATAAATATAT ACACACACACCTATATATGCCTAACATATACGCAGATATATGATATATAT ACATATAGAGAGAAACACACGCACACGGTTGGCATAGTGCGGTTTAGCTG TACGTATACGTAATATAATACCTAATGCTATTTCTATATCTATTTAAATT CCATTGTACGCTCGCTGGGAGCCCAACCAGATGATGTTTAATTGCTAATG AAAATGAATTATGCCTAATATATATCCATACATATATATATATATATATA ACACAACACCCCCCCCCTCTCCCCTCACACACTTGTATGGAGAACCTAGC CATAATGTTTGCTCTAAACAACTAGATTGATAATATTAAATATTAATAAA AAGAACCAACGCAAAACTGGAACGAAGAACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Lsd-2-RA | 2240 | Lsd-2-RA | 58..2190 | 1..2132 | 10625 | 99.9 | Plus |
Lsd-2.b | 2179 | Lsd-2.b | 48..2174 | 1..2132 | 10510 | 99.6 | Plus |
Lsd-2.d | 2398 | Lsd-2.d | 1205..2393 | 945..2132 | 5905 | 99.9 | Plus |
Lsd-2.d | 2398 | Lsd-2.d | 48..993 | 1..946 | 4730 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 14961617..14962803 | 2130..946 | 5870 | 99.8 | Minus |
chrX | 22417052 | chrX | 14965908..14966364 | 457..1 | 2225 | 99.1 | Minus |
chrX | 22417052 | chrX | 14964092..14964535 | 898..455 | 2175 | 99.3 | Minus |
chrX | 22417052 | chrX | 14963500..14963551 | 945..894 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15071461..15072648 | 2132..946 | 5890 | 99.9 | Minus |
X | 23542271 | X | 15075747..15076203 | 457..1 | 2285 | 100 | Minus |
X | 23542271 | X | 15073933..15074376 | 898..455 | 2205 | 99.8 | Minus |
X | 23542271 | X | 15073341..15073392 | 945..894 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15079559..15080746 | 2132..946 | 5900 | 99.9 | Minus |
X | 23527363 | X | 15083845..15084301 | 457..1 | 2285 | 100 | Minus |
X | 23527363 | X | 15082031..15082474 | 898..455 | 2205 | 99.7 | Minus |
X | 23527363 | X | 15081439..15081490 | 945..894 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rover | 7318 | rover ROVER 7318bp | 3151..3262 | 624..730 | 124 | 60.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 14964096..14964533 | 457..894 | 99 | <- | Minus |
chrX | 14963500..14963550 | 895..945 | 100 | <- | Minus |
chrX | 14965909..14966364 | 1..456 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 1..1059 | 264..1322 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 1..1059 | 264..1322 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 1..1059 | 264..1322 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 1..1059 | 264..1322 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 1..1059 | 264..1322 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 1..2131 | 1..2130 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 1..2131 | 1..2130 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 18..2148 | 1..2130 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 1..2131 | 1..2130 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lsd-2-RA | 18..2148 | 1..2130 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15071463..15072648 | 946..2130 | 99 | <- | Minus |
X | 15073341..15073391 | 895..945 | 100 | <- | Minus |
X | 15073937..15074374 | 457..894 | 100 | <- | Minus |
X | 15075748..15076203 | 1..456 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15071463..15072648 | 946..2130 | 99 | <- | Minus |
X | 15073341..15073391 | 895..945 | 100 | <- | Minus |
X | 15073937..15074374 | 457..894 | 100 | <- | Minus |
X | 15075748..15076203 | 1..456 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15071463..15072648 | 946..2130 | 99 | <- | Minus |
X | 15073341..15073391 | 895..945 | 100 | <- | Minus |
X | 15073937..15074374 | 457..894 | 100 | <- | Minus |
X | 15075748..15076203 | 1..456 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 14965496..14966681 | 946..2130 | 99 | <- | Minus |
arm_X | 14967374..14967424 | 895..945 | 100 | <- | Minus |
arm_X | 14967970..14968407 | 457..894 | 100 | <- | Minus |
arm_X | 14969781..14970236 | 1..456 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15083846..15084301 | 1..456 | 100 | Minus | |
X | 15079561..15080746 | 946..2130 | 99 | <- | Minus |
X | 15081439..15081489 | 895..945 | 100 | <- | Minus |
X | 15082035..15082472 | 457..894 | 100 | <- | Minus |
Translation from 263 to 1321
> GH06230.hyp MASAEQKHATGNGTTGNGTAMNDVDQPKDAKDLLPHLESLERIIKLPVVN AAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTRAVTTAAPFVTKLDRPIA YVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQPHLERVVKFK AAGQQKAASLKDLAWQKANEVLATQYGSLAVNGVDTTTALAERLLEYYFP KCESDVEEDNDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNK ISRRVYRNVSRQIKQVQKGNINDYLSSLIAALKLHQYINFINSSMGTNVE QSGGSSSDACSPFGTTTSTTTTTTTSSTSNNKPVVALPHVAKSKRAPAVS SQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Lsd-2-PA | 352 | CG9057-PA | 1..352 | 1..352 | 1787 | 100 | Plus |
Lsd-2-PB | 335 | CG9057-PB | 1..335 | 1..352 | 1668 | 94.9 | Plus |
Lsd-2-PF | 335 | CG9057-PF | 1..228 | 1..228 | 1163 | 99.6 | Plus |
Lsd-2-PE | 335 | CG9057-PE | 1..228 | 1..228 | 1163 | 99.6 | Plus |
Lsd-2-PD | 318 | CG9057-PD | 1..221 | 1..227 | 1076 | 94.3 | Plus |
Translation from 263 to 1321
> GH06230.pep MASAEQKHATGNGTTGNGTAMNDVDQPKDAKDLLPHLESLERIIKLPVVN AAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTRAVTTAAPFVTKLDRPIA YVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQPHLERVVKFK AAGQQKAASLKDLAWQKANEVLATQYGSLAVNGVDTTTALAERLLEYYFP KCESDVEEDNDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNK ISRRVYRNVSRQIKQVQKGNINDYLSSLIAALKLHQYINFINSSMGTNVE QSGGSSSDACSPFGTTTSTTTTTTTSSTSNNKPVVALPHVAKSKRAPAVS SQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21059-PA | 368 | GF21059-PA | 1..314 | 1..314 | 1593 | 95.9 | Plus |
Dana\GF16261-PA | 405 | GF16261-PA | 11..235 | 36..280 | 185 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19422-PA | 330 | GG19422-PA | 1..330 | 1..336 | 1727 | 97.3 | Plus |
Dere\GG11228-PA | 405 | GG11228-PA | 11..235 | 36..280 | 185 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24314-PA | 368 | GH24314-PA | 1..324 | 1..315 | 1435 | 84.6 | Plus |
Dgri\GH23614-PA | 409 | GH23614-PA | 11..238 | 36..280 | 202 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Lsd-2-PA | 352 | CG9057-PA | 1..352 | 1..352 | 1787 | 100 | Plus |
Lsd-2-PB | 335 | CG9057-PB | 1..335 | 1..352 | 1668 | 94.9 | Plus |
Lsd-2-PF | 335 | CG9057-PF | 1..228 | 1..228 | 1163 | 99.6 | Plus |
Lsd-2-PE | 335 | CG9057-PE | 1..228 | 1..228 | 1163 | 99.6 | Plus |
Lsd-2-PD | 318 | CG9057-PD | 1..221 | 1..227 | 1076 | 94.3 | Plus |
Lsd-1-PD | 405 | CG10374-PD | 11..218 | 36..268 | 196 | 23.9 | Plus |
Lsd-1-PC | 405 | CG10374-PC | 11..218 | 36..268 | 196 | 23.9 | Plus |
Lsd-1-PA | 431 | CG10374-PA | 11..244 | 36..268 | 193 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21559-PA | 137 | GI21559-PA | 7..92 | 228..314 | 412 | 89.7 | Plus |
Dmoj\GI10367-PA | 401 | GI10367-PA | 6..233 | 36..280 | 206 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15208-PA | 360 | GL15208-PA | 1..358 | 1..351 | 1533 | 85.4 | Plus |
Dper\GL23261-PA | 412 | GL23261-PA | 16..134 | 36..153 | 207 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21508-PA | 360 | GA21508-PA | 1..358 | 1..351 | 1528 | 85.1 | Plus |
Dpse\GA10284-PB | 434 | GA10284-PB | 12..260 | 36..284 | 207 | 24.5 | Plus |
Dpse\GA10284-PA | 408 | GA10284-PA | 12..130 | 36..153 | 206 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12009-PA | 336 | GM12009-PA | 1..336 | 1..336 | 1772 | 98.5 | Plus |
Dsec\GM26530-PA | 405 | GM26530-PA | 11..235 | 36..280 | 187 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15823-PA | 336 | GD15823-PA | 1..336 | 1..336 | 1776 | 98.8 | Plus |
Dsim\GD21037-PA | 404 | GD21037-PA | 11..235 | 36..280 | 190 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15704-PA | 305 | GJ15704-PA | 11..258 | 66..314 | 1212 | 90.8 | Plus |
Dvir\GJ22586-PA | 403 | GJ22586-PA | 6..234 | 36..280 | 200 | 24.9 | Plus |