Clone GH06230 Report

Search the DGRC for GH06230

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:62
Well:30
Vector:pOT2
Associated Gene/TranscriptLsd-2-RA
Protein status:GH06230.pep: gold
Preliminary Size:2200
Sequenced Size:2148

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9057 2001-01-01 Release 2 assignment
CG9057 2001-07-04 Blastp of sequenced clone
CG9057 2003-01-01 Sim4 clustering to Release 3
Lsd-2 2008-04-29 Release 5.5 accounting
Lsd-2 2008-08-15 Release 5.9 accounting
Lsd-2 2008-12-18 5.12 accounting

Clone Sequence Records

GH06230.complete Sequence

2148 bp (2148 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060242

> GH06230.complete
CCCAACGAGCAGACGTGAGCAGACGTGCCAAAAAGTGCTAGGAATAAAAT
AAAACAGAGTGCTTCCAGAACGCAGACACACGCATACCCTACATTCACAC
ACTCACTCGCAGGTTAAGCTGTTTTTTTGTTCGTGAAAGAAAAGAAGCAA
GAGGCGAAAAGAAAAGTGCGGTGGCAAGCGGAAGAGCTTGATAGCGAAAG
ACAGAAAGAAAAAGTGAAAAGGGCAGCAGAAAGCAGCGCAAGAGGAACCA
AAGAAAACTGATCATGGCCAGTGCAGAGCAGAAACACGCCACCGGGAACG
GAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAGGAT
GCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAAATT
GCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCAAAG
TAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAGGAT
TGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACTGGA
CCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATAAGC
TTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTACAAC
CAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCGCGT
CGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGGATC
TCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGTCTG
GCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCTTGA
ATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATGATA
AACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATGCCA
GTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGGACG
GCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGACAGA
TCAAGCAGGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTGATA
GCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGATGGG
CACGAATGTGGAGCAGTCTGGTGGCAGCAGCAGTGACGCCTGTTCGCCAT
TTGGAACCACCACTAGCACCACTACCACCACTACCACCAGCTCCACCAGC
AACAACAAGCCCGTTGTTGCCTTGCCACATGTGGCCAAAAGCAAACGGGC
GCCGGCGGTGTCGTCTCAGTAGTGGAGAAACAGCAGCTCATCTACAATTA
TATCTATCTATAGCTAGATATTATCCTCTTTCACGCACGCTCACCACCTA
AGATACCCCTCTACCTACCACCCACGCCGCCCATTTTATAATGTATTTTA
TAAATTCTTTTTTTTTTTTATTGCGTACTATTTCATTGAGTGTACTAGCC
GATACGAGTAGTACTTCCATAGAGGATCATTTAAAGTGGAGAAGGTTATT
CGAACGCACGCCCAAGAAGTCCGCCTCCTCCTGCGCCACCTGCTTTGTAA
ATATTTATTTGAAGTATAGCCCTCACCAATCCTAGTTATAAGATATAGTA
GTCGCAGAGATCCGGGAGTCAGAAGAGAGCGTTTTTTTTTCGTCAATTTT
AGCTGTGCTAAAGTGCCACGCATGCATTGAATAATACATTATAAATATAT
ACACACACACCTATATATGCCTAACATATACGCAGATATATGATATATAT
ACATATAGAGAGAAACACACGCACACGGTTGGCATAGTGCGGTTTAGCTG
TACGTATACGTAATATAATACCTAATGCTATTTCTATATCTATTTAAATT
CCATTGTACGCTCGCTGGGAGCCCAACCAGATGATGTTTAATTGCTAATG
AAAATGAATTATGCCTAATATATATCCATACATATATATATATATATATA
ACACAACACCCCCCCCCTCTCCCCTCACACACTTGTATGGAGAACCTAGC
CATAATGTTTGCTCTAAACAACTAGATTGATAATATTAAATATTAATAAA
AAGAACCAACGCAAAACTGGAACGAAGAACAAAAAAAAAAAAAAAAAA

GH06230.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 2240 Lsd-2-RA 58..2190 1..2132 10625 99.9 Plus
Lsd-2.b 2179 Lsd-2.b 48..2174 1..2132 10510 99.6 Plus
Lsd-2.d 2398 Lsd-2.d 1205..2393 945..2132 5905 99.9 Plus
Lsd-2.d 2398 Lsd-2.d 48..993 1..946 4730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14961617..14962803 2130..946 5870 99.8 Minus
chrX 22417052 chrX 14965908..14966364 457..1 2225 99.1 Minus
chrX 22417052 chrX 14964092..14964535 898..455 2175 99.3 Minus
chrX 22417052 chrX 14963500..14963551 945..894 260 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15071461..15072648 2132..946 5890 99.9 Minus
X 23542271 X 15075747..15076203 457..1 2285 100 Minus
X 23542271 X 15073933..15074376 898..455 2205 99.8 Minus
X 23542271 X 15073341..15073392 945..894 260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15079559..15080746 2132..946 5900 99.9 Minus
X 23527363 X 15083845..15084301 457..1 2285 100 Minus
X 23527363 X 15082031..15082474 898..455 2205 99.7 Minus
X 23527363 X 15081439..15081490 945..894 260 100 Minus
Blast to na_te.dros performed 2019-03-16 14:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 3151..3262 624..730 124 60.7 Plus

GH06230.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:24:03 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14964096..14964533 457..894 99 <- Minus
chrX 14963500..14963550 895..945 100 <- Minus
chrX 14965909..14966364 1..456 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:08 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..1059 264..1322 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:23 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..1059 264..1322 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:11:55 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..1059 264..1322 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:47 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..1059 264..1322 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:27:23 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..1059 264..1322 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:48 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..2131 1..2130 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:22 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..2131 1..2130 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:11:55 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 18..2148 1..2130 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:47 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..2131 1..2130 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:23 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 18..2148 1..2130 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:24:03 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
X 15071463..15072648 946..2130 99 <- Minus
X 15073341..15073391 895..945 100 <- Minus
X 15073937..15074374 457..894 100 <- Minus
X 15075748..15076203 1..456 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:24:03 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
X 15071463..15072648 946..2130 99 <- Minus
X 15073341..15073391 895..945 100 <- Minus
X 15073937..15074374 457..894 100 <- Minus
X 15075748..15076203 1..456 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:24:03 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
X 15071463..15072648 946..2130 99 <- Minus
X 15073341..15073391 895..945 100 <- Minus
X 15073937..15074374 457..894 100 <- Minus
X 15075748..15076203 1..456 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:11:55 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14965496..14966681 946..2130 99 <- Minus
arm_X 14967374..14967424 895..945 100 <- Minus
arm_X 14967970..14968407 457..894 100 <- Minus
arm_X 14969781..14970236 1..456 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:48 Download gff for GH06230.complete
Subject Subject Range Query Range Percent Splice Strand
X 15083846..15084301 1..456 100   Minus
X 15079561..15080746 946..2130 99 <- Minus
X 15081439..15081489 895..945 100 <- Minus
X 15082035..15082472 457..894 100 <- Minus

GH06230.hyp Sequence

Translation from 263 to 1321

> GH06230.hyp
MASAEQKHATGNGTTGNGTAMNDVDQPKDAKDLLPHLESLERIIKLPVVN
AAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTRAVTTAAPFVTKLDRPIA
YVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQPHLERVVKFK
AAGQQKAASLKDLAWQKANEVLATQYGSLAVNGVDTTTALAERLLEYYFP
KCESDVEEDNDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNK
ISRRVYRNVSRQIKQVQKGNINDYLSSLIAALKLHQYINFINSSMGTNVE
QSGGSSSDACSPFGTTTSTTTTTTTSSTSNNKPVVALPHVAKSKRAPAVS
SQ*

GH06230.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-PA 352 CG9057-PA 1..352 1..352 1787 100 Plus
Lsd-2-PB 335 CG9057-PB 1..335 1..352 1668 94.9 Plus
Lsd-2-PF 335 CG9057-PF 1..228 1..228 1163 99.6 Plus
Lsd-2-PE 335 CG9057-PE 1..228 1..228 1163 99.6 Plus
Lsd-2-PD 318 CG9057-PD 1..221 1..227 1076 94.3 Plus

GH06230.pep Sequence

Translation from 263 to 1321

> GH06230.pep
MASAEQKHATGNGTTGNGTAMNDVDQPKDAKDLLPHLESLERIIKLPVVN
AAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTRAVTTAAPFVTKLDRPIA
YVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQPHLERVVKFK
AAGQQKAASLKDLAWQKANEVLATQYGSLAVNGVDTTTALAERLLEYYFP
KCESDVEEDNDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNK
ISRRVYRNVSRQIKQVQKGNINDYLSSLIAALKLHQYINFINSSMGTNVE
QSGGSSSDACSPFGTTTSTTTTTTTSSTSNNKPVVALPHVAKSKRAPAVS
SQ*

GH06230.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21059-PA 368 GF21059-PA 1..314 1..314 1593 95.9 Plus
Dana\GF16261-PA 405 GF16261-PA 11..235 36..280 185 25.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19422-PA 330 GG19422-PA 1..330 1..336 1727 97.3 Plus
Dere\GG11228-PA 405 GG11228-PA 11..235 36..280 185 24.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24314-PA 368 GH24314-PA 1..324 1..315 1435 84.6 Plus
Dgri\GH23614-PA 409 GH23614-PA 11..238 36..280 202 25.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-PA 352 CG9057-PA 1..352 1..352 1787 100 Plus
Lsd-2-PB 335 CG9057-PB 1..335 1..352 1668 94.9 Plus
Lsd-2-PF 335 CG9057-PF 1..228 1..228 1163 99.6 Plus
Lsd-2-PE 335 CG9057-PE 1..228 1..228 1163 99.6 Plus
Lsd-2-PD 318 CG9057-PD 1..221 1..227 1076 94.3 Plus
Lsd-1-PD 405 CG10374-PD 11..218 36..268 196 23.9 Plus
Lsd-1-PC 405 CG10374-PC 11..218 36..268 196 23.9 Plus
Lsd-1-PA 431 CG10374-PA 11..244 36..268 193 22.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21559-PA 137 GI21559-PA 7..92 228..314 412 89.7 Plus
Dmoj\GI10367-PA 401 GI10367-PA 6..233 36..280 206 24.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15208-PA 360 GL15208-PA 1..358 1..351 1533 85.4 Plus
Dper\GL23261-PA 412 GL23261-PA 16..134 36..153 207 32.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21508-PA 360 GA21508-PA 1..358 1..351 1528 85.1 Plus
Dpse\GA10284-PB 434 GA10284-PB 12..260 36..284 207 24.5 Plus
Dpse\GA10284-PA 408 GA10284-PA 12..130 36..153 206 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12009-PA 336 GM12009-PA 1..336 1..336 1772 98.5 Plus
Dsec\GM26530-PA 405 GM26530-PA 11..235 36..280 187 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15823-PA 336 GD15823-PA 1..336 1..336 1776 98.8 Plus
Dsim\GD21037-PA 404 GD21037-PA 11..235 36..280 190 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15704-PA 305 GJ15704-PA 11..258 66..314 1212 90.8 Plus
Dvir\GJ22586-PA 403 GJ22586-PA 6..234 36..280 200 24.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16346-PA 366 GK16346-PA 1..326 1..314 1494 88.3 Plus
Dwil\GK22418-PA 417 GK22418-PA 11..239 36..280 191 24.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16074-PA 330 GE16074-PA 1..330 1..336 1720 96.7 Plus
Dyak\GE10394-PA 405 GE10394-PA 11..235 36..280 187 25.1 Plus